ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3381 good D KOG0987 Cell cycle control, cell division, chromosome partitioning DNA helicase PIF1/RRM3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3381 1148444 1150564 707
(707 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR031c [D] KOG0987 DNA helicase PIF1/RRM3 484 e-136
YML061c [D] KOG0987 DNA helicase PIF1/RRM3 376 e-104
SPBC887.14c [D] KOG0987 DNA helicase PIF1/RRM3 372 e-103
7295800 [D] KOG0987 DNA helicase PIF1/RRM3 197 4e-50
Hs15300290 [D] KOG0987 DNA helicase PIF1/RRM3 121 4e-27
CE26962 [D] KOG0987 DNA helicase PIF1/RRM3 116 1e-25
At3g31980 [D] KOG0987 DNA helicase PIF1/RRM3 76 2e-13
At3g43350 [D] KOG0987 DNA helicase PIF1/RRM3 74 1e-12
At2g14470 [D] KOG0987 DNA helicase PIF1/RRM3 74 1e-12
At2g05080 [D] KOG0987 DNA helicase PIF1/RRM3 72 3e-12
CE24155 [D] KOG0987 DNA helicase PIF1/RRM3 65 5e-10
CE05256 [D] KOG0987 DNA helicase PIF1/RRM3 65 5e-10
At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3 62 2e-09
CE26057_1 [D] KOG0987 DNA helicase PIF1/RRM3 60 9e-09
At5g37110 [D] KOG0987 DNA helicase PIF1/RRM3 59 3e-08
At3g13250 [D] KOG0987 DNA helicase PIF1/RRM3 58 4e-08
At1g64410_2 [D] KOG0987 DNA helicase PIF1/RRM3 58 4e-08
At2g05640 [D] KOG0987 DNA helicase PIF1/RRM3 56 2e-07
At3g30420 [D] KOG0987 DNA helicase PIF1/RRM3 55 4e-07
At1g54430 [D] KOG0987 DNA helicase PIF1/RRM3 55 4e-07
At2g07620 [D] KOG0987 DNA helicase PIF1/RRM3 55 5e-07
At3g42100 [D] KOG0987 DNA helicase PIF1/RRM3 54 8e-07
At1g35940 [D] KOG0987 DNA helicase PIF1/RRM3 54 8e-07
At5g32630 [D] KOG0987 DNA helicase PIF1/RRM3 52 3e-06
At4g03690 [D] KOG0987 DNA helicase PIF1/RRM3 52 4e-06
CE26961 [D] KOG0987 DNA helicase PIF1/RRM3 51 7e-06
At3g30560 [D] KOG0987 DNA helicase PIF1/RRM3 50 9e-06
>YHR031c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 723
Score = 484 bits (1247), Expect = e-136
Identities = 269/531 (50%), Positives = 350/531 (65%), Gaps = 14/531 (2%)
Query: 178 KRVKPIPRQSIVSHTXXXXXXXXXINGRIELTAEQRKVIEYVCKDRLNVFYTGSAGTGKS 237
K++KP+ R+++ + + + LT EQ +V+ + K R NVFYTGSAGTGKS
Sbjct: 205 KKIKPLLRKTV---SNMDSMNHRSASSPVVLTMEQERVVNLIVKKRTNVFYTGSAGTGKS 261
Query: 238 VILRTMISTLNAKYGKDAVAVTASTGLAAVNIGGITINKFSGVGIGQGDANRLINMVKRN 297
VIL+T+I L++ YGK+++A+TASTGLAAV IGG T++K+SG+GIG ++L+ ++
Sbjct: 262 VILQTIIRQLSSLYGKESIAITASTGLAAVTIGGSTLHKWSGIGIGNKTIDQLVKKIQSQ 321
Query: 298 KTSLNRWKRTKVLIVDEISMIDGYFLDKLDAIGRGLLNRTKPFGGIQLVFTGDFFQLPPV 357
K L W+ TKVLI+DEISM+DG LDKL+ I R + PFGGIQLV TGDFFQLPPV
Sbjct: 322 KDLLAAWRYTKVLIIDEISMVDGNLLDKLEQIARRIRKNDDPFGGIQLVLTGDFFQLPPV 381
Query: 358 PDRDSNKAGPIFCFESNVWKYAIHKTILLQQVFRQTDNELIDLLNGIRMGNTSGDTIKLI 417
+D + FCFES +WK I KTILL +VFRQ DN+LID+LN IR G + D K I
Sbjct: 382 AKKDEHNVVK-FCFESEMWKRCIQKTILLTKVFRQQDNKLIDILNAIRYGELTVDIAKTI 440
Query: 418 KKFEAPVEYDDGIEPTELYPTRREVELSNKRRLERLPGYEILYKAVDFXXXXXXXXXXXX 477
+ ++Y DGI PTELY TRREVELSN ++L+ LPG +KAVD
Sbjct: 441 RNLNRDIDYADGIAPTELYATRREVELSNVKKLQSLPGDLYEFKAVDNAPERYQAILDSS 500
Query: 478 VMAEKEIKLKEDAQVMMLKNIDDT-LVNGSLGRVLFFCTSALFLEASKIFPDLSDPEVVQ 536
+M EK + LKEDAQVMMLKN D LVNGSLG+VLFF T +L ++ +I+ + D EVV
Sbjct: 501 LMVEKVVALKEDAQVMMLKNKPDVELVNGSLGKVLFFVTESLVVKMKEIY-KIVDDEVVM 559
Query: 537 DMRCVCRAIGVPPSGRSSDLQRDINLRPTNRQEVLNFVLDKASKIVNGPGILSTIMFPVV 596
DMR V R IG P S + ++D+N RP R E L +++ A KI FP V
Sbjct: 560 DMRLVSRVIGNPLLKESKEFRQDLNARPLARLERLKILINYAVKISP-----HKEKFPYV 614
Query: 597 KFIDKQDIRGYQIKLVEPEEFSVG-ETEKDSAVRKQLPLMLCWAISIHKSQGQTIDRLKV 655
++ ++ Y +L+ PE F + E R Q+PLMLCWA+SIHK+QGQTI RLKV
Sbjct: 615 RWTVGKN--KYIHELMVPERFPIDIPRENVGLERTQIPLMLCWALSIHKAQGQTIQRLKV 672
Query: 656 DLKRTFESGQVYVALSRAVSKDRLQITNFDPHKIKVNEKVKDFYQNLHKLK 706
DL+R FE+GQVYVALSRAV+ D LQ+ NFDP KI+ NE+VKDFY+ L LK
Sbjct: 673 DLRRIFEAGQVYVALSRAVTMDTLQVLNFDPGKIRTNERVKDFYKRLETLK 723
>YML061c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 859
Score = 376 bits (966), Expect = e-104
Identities = 230/534 (43%), Positives = 318/534 (59%), Gaps = 45/534 (8%)
Query: 208 LTAEQRKVIEYVCKDRLNVFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTASTGLAAV 267
L+ EQ +I+ + ++ N+FYTGSAGTGKS++LR MI L YG++ VAVTASTGLAA
Sbjct: 237 LSKEQESIIK-LAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGRENVAVTASTGLAAC 295
Query: 268 NIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDKLD 327
NIGGITI+ F+G+G+G+GDA++L V+R++ L RW+ L+VDEISM+D LDKLD
Sbjct: 296 NIGGITIHSFAGIGLGKGDADKLYKKVRRSRKHLRRWENIGALVVDEISMLDAELLDKLD 355
Query: 328 AIGRGLLNRTKPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVWKYAIHKTILLQ 387
I R + +PFGGIQL+F GDFFQLPPV +D N+ F FES WK + TI+LQ
Sbjct: 356 FIARKIRKNHQPFGGIQLIFCGDFFQLPPV-SKDPNRPTK-FAFESKAWKEGVKMTIMLQ 413
Query: 388 QVFRQT-DNELIDLLNGIRMGNTSGDTIKLIKKFEAPVEYDDGIEPTELYPTRREVELSN 446
+VFRQ D + ID+LN +R+GN +T + KK P+ DD I P ELY TR EVE +N
Sbjct: 414 KVFRQRGDVKFIDMLNRMRLGNIDDETEREFKKLSRPLP-DDEIIPAELYSTRMEVERAN 472
Query: 447 KRRLERLPGYEILYKAVD---FXXXXXXXXXXXXVMAEKEIKLKEDAQVMMLKNIDDTLV 503
RL +LPG ++ A+D +A KE+ LK AQVMM+KN+D TLV
Sbjct: 473 NSRLSKLPGQVHIFNAIDGGALEDEELKERLLQNFLAPKELHLKVGAQVMMVKNLDATLV 532
Query: 504 NGSLGRVL-------FFCTSALFLEAS----KIFPDLSDPEVV-----------QDMRCV 541
NGSLG+V+ +FC AL + S K+ +P + ++
Sbjct: 533 NGSLGKVIEFMDPETYFCYEALTNDPSMPPEKLETWAENPSKLKAAMEREQSDGEESAVA 592
Query: 542 CRAIGVPPSGRSSDLQRDINLRPTNRQEVLNFVLDKASKIVNG----PGILSTI------ 591
R V SD+ ++ ++ + + V ++ ++ TI
Sbjct: 593 SRKSSVKEGFAKSDIGEPVSPLDSSVFDFMKRVKTDDEVVLENIKRKEQLMQTIHQNSAG 652
Query: 592 --MFPVVKFIDKQDIRGYQIKLVEPEEFSV-GETEKDSAVRKQLPLMLCWAISIHKSQGQ 648
P+V+F K ++ LVEPE++++ E EK R QLPLML W++SIHKSQGQ
Sbjct: 653 KRRLPLVRF--KASDMSTRMVLVEPEDWAIEDENEKPLVSRVQLPLMLAWSLSIHKSQGQ 710
Query: 649 TIDRLKVDLKRTFESGQVYVALSRAVSKDRLQITNFDPHKIKVNEKVKDFYQNL 702
T+ ++KVDL+R FE GQ YVALSRAVS++ LQ+ NFD +IK ++KV DFY L
Sbjct: 711 TLPKVKVDLRRVFEKGQAYVALSRAVSREGLQVLNFDRTRIKAHQKVIDFYLTL 764
>SPBC887.14c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 805
Score = 372 bits (956), Expect = e-103
Identities = 213/506 (42%), Positives = 309/506 (60%), Gaps = 41/506 (8%)
Query: 206 IELTAEQRKVIEYVCKDRLNVFYTGSAGTGKSVILRTMISTLNAKYGK--DAVAVTASTG 263
I L+ EQ+++++ V + + ++F+TGSAGTGKSV+LR +I L +KY K D VAVTASTG
Sbjct: 308 IFLSDEQKRILDMVVEQQHSIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTG 367
Query: 264 LAAVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFL 323
LAA NIGG+T++ F+GVG+ + + L++ +K+NK +NRW RT+VLI+DE+SM+D +
Sbjct: 368 LAACNIGGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAELM 427
Query: 324 DKLDAIGRGLLNRTKPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVWKYAIHKT 383
DKL+ + R + +KPFGGIQLV TGDFFQLPPVP+ FCFES WK A+ T
Sbjct: 428 DKLEEVARVIRKDSKPFGGIQLVLTGDFFQLPPVPENGKESK---FCFESQTWKSALDFT 484
Query: 384 ILLQQVFRQTDNELIDLLNGIRMGNTSGDTIKLIKKFEAPVEYDDGIEPTELYPTRREVE 443
I L VFRQ D E + +LN +R+G S ++++ K +EY+DG+ PTEL+PTR EVE
Sbjct: 485 IGLTHVFRQKDEEFVKMLNELRLGKLSDESVRKFKVLNRTIEYEDGLLPTELFPTRYEVE 544
Query: 444 LSNKRRLERLPGYEILYKAVDFXXXXXXXXXXXXV---MAEKEIKLKEDAQVMMLKNIDD 500
SN R++++ + + A+D + MA + LK +AQVM++KNIDD
Sbjct: 545 RSNDMRMQQINQNPVTFTAIDSGTVRDKEFRDRLLQGCMAPATLVLKVNAQVMLIKNIDD 604
Query: 501 TLVNGSLGRVLFFCTSALFLEASKIFPDLSDPEVVQDMRCVCRAIGVPPSGRSSDLQRDI 560
LVNGSLG+V+ F + K D E+ GR++ +
Sbjct: 605 QLVNGSLGKVIGFIDDETYQMEKK------DAEM---------------QGRNAFEYDSL 643
Query: 561 NLRPTNRQEVLNFVLDKASKIVNGPGILSTIMFPVVKFIDKQDIRGYQIKLVEPEEFSV- 619
++ P + +V K I + I +P+V+F K G + +V+ E +++
Sbjct: 644 DISPFDLPDVKQ---KKYKLIAMRKASSTAIKWPLVRF--KLPNGGERTIVVQRETWNIE 698
Query: 620 ---GETEKDSAVRKQLPLMLCWAISIHKSQGQTIDRLKVDLKRTFESGQVYVALSRAVSK 676
GE + A R Q+PL+L +AISIHK+QGQT+DR+KVDL R FE GQ YVALSRA ++
Sbjct: 699 LPNGEVQ---ASRSQIPLILAYAISIHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQ 755
Query: 677 DRLQITNFDPHKIKVNEKVKDFYQNL 702
+ LQ+ NF P K+ + KV FY+ L
Sbjct: 756 EGLQVLNFSPAKVMAHPKVVQFYKQL 781
>7295800 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 663
Score = 197 bits (502), Expect = 4e-50
Identities = 122/314 (38%), Positives = 179/314 (56%), Gaps = 16/314 (5%)
Query: 206 IELTAEQRKVIEYVCKDRLNVFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTASTGLA 265
+ L+ EQ +V+ C +VF+TGSAGTGKS +LR +IS L D TASTG+A
Sbjct: 203 LRLSEEQMEVLR-ACTSGKSVFFTGSAGTGKSFLLRRIISALPP----DGTVATASTGVA 257
Query: 266 AVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDK 325
A IGG T++ F+G+G G R + + R + W++ K LI+DEISM+DG F +K
Sbjct: 258 ACLIGGTTLHAFAGIGGGDATMQRCLELASR-PANAQTWRKCKRLIIDEISMVDGQFFEK 316
Query: 326 LDAIGRGLLNRTKPFGGIQLVFTGDFFQLPPVPDRDSNKAGPI-----FCFESNVWKYAI 380
++A+ R + +PFGGIQL+ GDF QLPPV D A FCF+S+ W+ I
Sbjct: 317 IEAVARHIRRNDRPFGGIQLILCGDFLQLPPVIKGDFGAAPTATPQQRFCFQSSAWETCI 376
Query: 381 HKTILLQQVFRQTDNELIDLLNGIRMGNTSGD-TIKLIKKFEAPVEYDDGIEPTELYPTR 439
L+QV RQ+D E + +LN +R+G+ + T +L + +E +GI T+L
Sbjct: 377 QCVYELKQVHRQSDPEFVKILNHLRIGHVNDSITSRLAATSKQKIE-GNGILATQLCSHT 435
Query: 440 REVELSNKRRLERLPGYEILYKAVDFXXXXXXXXXXXXVMAEKEIKLKEDAQVMMLKNID 499
+ N+ +LE L G +IL+KA D + A ++ LK +AQVM+LKNI+
Sbjct: 436 NDANSINESKLENLDGDKILFKA-DDSDASMTRTLDQQIQAPSQLYLKVNAQVMLLKNIN 494
Query: 500 --DTLVNGSLGRVL 511
+ LVNG+ G V+
Sbjct: 495 ISNGLVNGARGVVV 508
Score = 82.0 bits (201), Expect = 3e-15
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 9/142 (6%)
Query: 566 NRQEVLNFVLDKASKIVNGPGILSTIM---FPVVKFIDKQDIRGYQIKLVEPEEFSVGET 622
N Q +L ++ ++ +VNG + M PVV+F + Q+ + + E + +
Sbjct: 484 NAQVMLLKNINISNGLVNGARGVVVRMEKDLPVVRFKNNQEY------VCKHERWIIKTA 537
Query: 623 EKDSAVRKQLPLMLCWAISIHKSQGQTIDRLKVDLKRTFESGQVYVALSRAVSKDRLQIT 682
+ R+Q+PL L WA SIHKSQG T+D +++ L + FE+GQ YVALSRA S ++I
Sbjct: 538 SGNHITRRQVPLKLAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRIL 597
Query: 683 NFDPHKIKVNEKVKDFYQNLHK 704
+FD ++ N V FY+ +
Sbjct: 598 DFDAKQVWANPHVLQFYKGFRR 619
>Hs15300290 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 332
Score = 121 bits (303), Expect = 4e-27
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 6/199 (3%)
Query: 317 MIDGYFLDKLDAIGRGLLNRTKPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVW 376
M++ DKL+A+ R + + KPFGGIQL+ GDF QLPPV P FCF+S W
Sbjct: 1 MVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVT---KGSQPPRFCFQSKSW 57
Query: 377 KYAIHKTILLQQVFRQTDNELIDLLNGIRMGNTSGDTIKLIKKFEAPVEYDDGIEPTELY 436
K + T+ L +V+RQ D I LL +R+G S + + ++ + DGI T L
Sbjct: 58 KRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLC 117
Query: 437 PTRREVELSNKRRLERLPGYEILYKAVDFXXXXXXXXXXXXVMAEKEIKLKEDAQVMMLK 496
+ +V L+N+RRL+ LPG ++A+D +++ ++LK AQVM++K
Sbjct: 118 THQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQL-LQLKLGAQVMLVK 176
Query: 497 NIDDT--LVNGSLGRVLFF 513
N+ + LVNG+ G V+ F
Sbjct: 177 NLSVSRGLVNGARGVVVGF 195
Score = 84.3 bits (207), Expect = 6e-16
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 610 KLVEPEEFSVGETEKDSAVRKQLPLMLCWAISIHKSQGQTIDRLKVDLKRTFESGQVYVA 669
+++ + ++V T R+QLPL L WA+SIHKSQG T+D +++ L R F SGQ YVA
Sbjct: 213 EVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVA 272
Query: 670 LSRAVSKDRLQITNFDPHKIKVNEKVKDFYQNLHK 704
LSRA S L++ +FDP ++ + +V FY L +
Sbjct: 273 LSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRR 307
>CE26962 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 723
Score = 116 bits (291), Expect = 1e-25
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 10/184 (5%)
Query: 329 IGRGLLNRTKPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVWKYAIHKTILLQQ 388
+ R + N KPFGGIQL+ TGDFFQLPPV +K P+FCFES W I KTI+L+
Sbjct: 498 VARTVRNNDKPFGGIQLIITGDFFQLPPV-----SKDEPVFCFESEAWSRCIQKTIVLKN 552
Query: 389 VFRQTDNELIDLLNGIRMGNTSGDTIKLIKKFEAPVEYDDGIEPTELYPTRREVELSNKR 448
V RQ DN + +LN +R+G + ++K+ + ++ + PT+L + + N
Sbjct: 553 VKRQNDNVFVKILNNVRVGKCDFKSADILKE-SSKNQFPSSVIPTKLCTHSDDADRINSS 611
Query: 449 RLERLPGYEILYKAVDFXXXXXXXXXXXXVMAEKEIKLKEDAQVMMLKNID--DTLVNGS 506
+E G + A D +A+K++ LK AQVM++KNID L NGS
Sbjct: 612 SIETTQGDAKTFHAYD--DESFDTHAKARTLAQKKLVLKVGAQVMLIKNIDVIKGLCNGS 669
Query: 507 LGRV 510
G V
Sbjct: 670 RGFV 673
Score = 97.8 bits (242), Expect = 5e-20
Identities = 55/128 (42%), Positives = 77/128 (59%), Gaps = 4/128 (3%)
Query: 202 INGRIELTAEQRKVIEYVCKDRLNVFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
I+ RI+L+ EQ+ V+ V R +VF+TGSAGTGKSVILR +I L A +TA+
Sbjct: 261 ISERIQLSDEQKSVVRCVINSRTSVFFTGSAGTGKSVILRRIIEMLPA----GNTYITAA 316
Query: 262 TGLAAVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
TG+AA IGGIT++ F G + + V R + +WK+ LI+DEISMID
Sbjct: 317 TGVAASQIGGITLHAFCGFRYENSTPEQCLKQVLRQNHMVRQWKQCSHLIIDEISMIDRD 376
Query: 322 FLDKLDAI 329
F + L+ +
Sbjct: 377 FFEALEYV 384
>At3g31980 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1099
Score = 76.3 bits (186), Expect = 2e-13
Identities = 121/521 (23%), Positives = 216/521 (41%), Gaps = 65/521 (12%)
Query: 207 ELTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
++T+EQ+ + + + K L F G GT K+ + +T+ + + + G +V V AS
Sbjct: 617 KMTSEQKGIYDEIIKAVLENSGGIFFVYGFGGTSKTFMWKTLSAAVRMR-GLISVNV-AS 674
Query: 262 TGLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDG 320
+G+A++ + GG T + G+ I D + N N K ++I DE M+
Sbjct: 675 SGIASLLLQGGRTAHSRFGIPINPDDFTTC--HIVPNSDLANMLKEASLIIWDEAPMMSR 732
Query: 321 YFLDKLDAIGRGLLNRT--KPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVWKY 378
Y + LD ++ KPFGG +VF GDF Q+ PV + +A + ++ + +
Sbjct: 733 YCFESLDRSLNDVIGNIDGKPFGGKVVVFGGDFRQVLPV-IHGAGRAEIVLAALNSSYLW 791
Query: 379 AIHKTILLQQVFRQTDNELIDLLNGIRMGNTSGDTIKLIKKFEA-PVEYDDGIEPTELYP 437
K + L + R N+L D + IK+F + DG P
Sbjct: 792 EHCKVLTLTKNMRLMSNDL------------DKDEAEEIKEFSNWLLAVGDG---RVSEP 836
Query: 438 TRREVELSNKRRL---ERLPGYEILYKAVDFXXXXXXXXXXXXVMAEKEIKLKEDAQVMM 494
EV + L + E + KAV ++ I + V
Sbjct: 837 NDGEVLIDIPEELLIKDANDPIEAITKAVYGDLDLLQPNNDPKFFQQRAILCPRNTDVNT 896
Query: 495 LKNIDDTLVNGSLGRVLFFCTSALFLEASKIFP----DLSDPEVVQDMRCVCRAIGVPPS 550
+ +I +NG L +L A I P L++P + D + G+P
Sbjct: 897 INDIMLDKLNGEL---------VTYLSADSIDPQDAASLNNPVLTPDFLNSIKLSGLPNH 947
Query: 551 GRSSDLQRDINLRPTNRQEVLNFVLDKASKIVNGPGILSTIMFPVVKFIDKQDIRGYQI- 609
+ + + L +D + NG + T M + ++ + I G ++
Sbjct: 948 NLTLKIGTPVMLLRN---------IDPKGGLCNGTRLQVTQMGNHI--LEARVITGDRVG 996
Query: 610 --KLVEPEEFSVGETEKDSAV-RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQ 665
++ + S +T+ + R+Q P+ + +A++I+KSQGQ++ + + L K F GQ
Sbjct: 997 DKVIIIKSQISPSDTKLPFRMRRRQFPIAVAFAMTINKSQGQSLKEVGIYLPKPVFSHGQ 1056
Query: 666 VYVALSRAVSKDRLQITNFD----PHKIKVNEKVKDFYQNL 702
+YVALSR SK L++ D +N K+ +QN+
Sbjct: 1057 LYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNI 1097
>At3g43350 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 830
Score = 73.6 bits (179), Expect = 1e-12
Identities = 122/545 (22%), Positives = 216/545 (39%), Gaps = 76/545 (13%)
Query: 214 KVIEYVCKDRLNVFYT-GSAGTGKSVILRTMISTLNAKYGKDAVAVTASTGLAAVNI-GG 271
++++ V DR VF+ G GTGK+ + + + + + +K D AS+G+AA+ + GG
Sbjct: 186 EIMDVVLHDRGGVFFVYGFGGTGKTFLWKLLSAAVRSK--GDISLNVASSGIAALRLDGG 243
Query: 272 ITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDKLDAIGR 331
T + + I +++ + R K K++I DE M+ + + LD +
Sbjct: 244 RTAHSRFDIPINPNESSTC--NISRGSDLGELVKEAKLIIWDEAPMMSKHCFESLDRTLK 301
Query: 332 GLLNRT--KPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESN-VWKYA----IHKTI 384
++N KP GG +VF GDF Q+ PV + + S+ +W+++ + K +
Sbjct: 302 DIVNNPGDKPLGGKVIVFGGDFRQVLPVINGAGREEIVFAALNSSYIWEHSKVLELTKNM 361
Query: 385 -LLQQVFRQTDNELIDLLNGIR-----------------------MGNTSGDTIKLI--- 417
LL + ++ D I + N D ++ I
Sbjct: 362 RLLADISEHEKRDIEDFSKWILDVGDGKISQPNDGIALIDIPEEFLINGDNDPVESIIEA 421
Query: 418 --------KKFEAPVEYDDGIEPTELYPTRREVELSNKRRLERLPGYEILYKAVDFXXXX 469
+K +Y L PT +V N+ + L G E +Y + D
Sbjct: 422 VYGNTFMEEKDPKKTDYPQYQGRAILCPTNEDVNSINEHMMRMLDGEERIYLSSDSIDPA 481
Query: 470 XXXXXXXXV-------------MAEKEIKLKEDAQVMMLKNIDDT--LVNGSLGRVLFFC 514
+ ++LK VM+L+N+D L NG+ +V
Sbjct: 482 DISSANNAAYLADFLNNVRVYGLPNHCLRLKVGCPVMLLRNMDPNKGLCNGTRLQVTQMT 541
Query: 515 TSALFLEASKIFPDLSDPEVVQDMRCVCRAIGVP--PSGRSSDLQRDINLRPTNRQEVLN 572
+ + F + Q + V + P G+ + + +L
Sbjct: 542 DTIIQARFITAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTSKTIGCPVMLL 601
Query: 573 FVLDKASKIVNGPGILSTIMFPVV---KFIDKQDIRGYQIKLVEPEEFSVGETEKDSAVR 629
+D + NG + T M V +FI R +I L+ + +T +R
Sbjct: 602 RNMDPNKGLCNGTRLQVTQMADTVIQARFITGN--RVGKIVLIPRMLITPSDTRLPFKMR 659
Query: 630 -KQLPLMLCWAISIHKSQGQTIDRLKVDLKR-TFESGQVYVALSRAVSK----DRLQITN 683
KQ L + +A++I+KSQGQT++ + + L R F GQ+YVA+SR SK + + N
Sbjct: 660 RKQFALSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTSKTVGCPVMLLRN 719
Query: 684 FDPHK 688
DP+K
Sbjct: 720 MDPNK 724
>At2g14470 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1265
Score = 73.6 bits (179), Expect = 1e-12
Identities = 123/510 (24%), Positives = 213/510 (41%), Gaps = 83/510 (16%)
Query: 208 LTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAST 262
LT EQR V + + N F G GTGK+ I +T+ +T+ +Y V AS+
Sbjct: 802 LTPEQRGVYNEITEAVFNNLGGVFFVYGFGGTGKTFIWKTLSATI--RYRDQIVLNVASS 859
Query: 263 GLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
G+A++ + GG T + G+ + + + + +K N K+ ++I DE M+ +
Sbjct: 860 GIASLLLEGGRTAHSRFGIPLNPDEFS--VCKIKPKSDLANLVKKASLVIWDEAPMMSRF 917
Query: 322 FLDKLDAIGRGLLNRTKP--FGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESNVWKYA 379
+ LD ++ T FGG +VF GDF Q+ PV N AG + + +
Sbjct: 918 CFEALDKSFSDIIKNTDNTVFGGKVVVFGGDFRQVFPV----INGAG-----RAEIVMSS 968
Query: 380 IHKTILLQ--QVFRQTDNELIDLLNGIRMGNTSGDTIKLIKKFEAPV---------EYDD 428
++ + L +V + T N + N S K I++F + E +D
Sbjct: 969 LNASYLWDNCKVLKLTKN------TRLLANNLSETEAKEIQEFSDWLLAVGDGRINESND 1022
Query: 429 GIE----PTELYPTRREVELSNKRRLERLPGYEILYKAVDFXXXXXXXXXXXXVMAEKEI 484
G+ P +L T + + + E +IL++ D
Sbjct: 1023 GVAIIDIPEDLLITNADKPIESITN-EIYGDPKILHEITD-------------------P 1062
Query: 485 KLKEDAQVMMLKNIDDTLVNGSLGRVLFFCTSALFLEASKIFP----DLSDPEVVQDMRC 540
K + ++ KN D +N L L ++L A I P LS+P + D
Sbjct: 1063 KFFQGRAILASKNEDVNTINEYLLDQL-HAEERIYLSADSIDPTDSDSLSNPVITPDFLN 1121
Query: 541 VCRAIGVPPSGRSSDLQRDINLRPTNRQEVLNFVLDKASKIVNGPGILSTIMFPVVKFID 600
+ G+P + L+ +L LD + NG + T + + ++
Sbjct: 1122 SIKLPGLP--------NHSLRLK-VGAPVLLLRNLDPKGGLCNGTRLQITQL--CTQIVE 1170
Query: 601 KQDIRGYQIK---LVEPEEFSVGETEKDSAVR-KQLPLMLCWAISIHKSQGQTIDRLKVD 656
+ I G +I L+ + T+ +R +Q PL + + ++I+KS+GQ+++ + +
Sbjct: 1171 AKVITGDRIGHIILIPTVNLTPTNTKLPFKMRRRQFPLSVAFVMTINKSEGQSLEHVGLY 1230
Query: 657 L-KRTFESGQVYVALSRAVSKDRLQITNFD 685
L K F GQ+YVALSR SK L+I D
Sbjct: 1231 LPKPVFSHGQLYVALSRVTSKKGLKILILD 1260
>At2g05080 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1219
Score = 72.0 bits (175), Expect = 3e-12
Identities = 98/382 (25%), Positives = 162/382 (41%), Gaps = 57/382 (14%)
Query: 207 ELTAEQRKVIEYVC----KDRLNVFYT-GSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
+LT EQ+ V + + ++ VF+ G GTGK+ + +T+ + L +K D V AS
Sbjct: 746 KLTLEQKSVYDNIIGAVNENVGGVFFVYGFGGTGKTFLWKTLSAALRSK--GDIVLNVAS 803
Query: 262 TGLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDG 320
+G+A++ + GG T + SG+ + + NM K N K ++I DE M+
Sbjct: 804 SGIASLLLEGGRTAHSRSGIPLNPNEFTTC-NM-KAGSDRANLVKEASLIIWDEAPMMSR 861
Query: 321 YFLDKLDAIGRGLLNR--TKPFGGIQLVFTGDFFQ-LPPVPDRDSNKAGPIFCFESNVWK 377
+ + LD + KPFGG +VF GDF Q LP +P D+ S +W
Sbjct: 862 HCFESLDRSLSDICGNCDNKPFGGKVVVFGGDFRQVLPVIPGADTADIVMAALNSSYLWS 921
Query: 378 YAIHKTILLQQVFRQTDNELIDLLNGIRMGN-TSGDTI------KLIKKFEAPV------ 424
+ K + L + E I + R+G G+ + LI K + P+
Sbjct: 922 HC--KVLTLTKNMCLFSEEWILAVGDGRIGEPNDGEALIDIPSEFLITKAKDPIQAICTE 979
Query: 425 ---------EYDDGI---EPTELYPTRREVELSNKRRLERLPGYEILYKAVDFXXXXXXX 472
E D + E L PT +V N+ L+ L G E+ + + D
Sbjct: 980 IYGDITKIHEQKDPVFFQERAILCPTNEDVNQINETMLDNLQGEELTFLSSDSLDTADIG 1039
Query: 473 XXXXXV-------------MAEKEIKLKEDAQVMMLKNIDDT--LVNGSLGRVLFFCTSA 517
V ++ +++LK + VM+L+NID L+NG+ R+ S
Sbjct: 1040 SRNNPVLTPEFLNNVKVLGLSNHKLRLKIGSPVMLLRNIDPIGGLMNGT--RLQIMQMSP 1097
Query: 518 LFLEASKIFPDLSDPEVVQDMR 539
L+A + D +D ++ MR
Sbjct: 1098 FILQAMILTGDRADTKLPFRMR 1119
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDLKR-TFESGQVYVALSRAVSKDRLQI 681
R QLPL +C+A++I+KSQGQ++ R+ + L R F Q+YVA+SR SK L+I
Sbjct: 1120 RTQLPLAVCFAMTINKSQGQSLKRVGIFLPRPCFSHSQLYVAISRVTSKSGLKI 1173
>CE24155 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 180
Score = 64.7 bits (156), Expect = 5e-10
Identities = 43/150 (28%), Positives = 80/150 (52%), Gaps = 12/150 (8%)
Query: 211 EQRKVIEYVCKD-----RLNVFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTASTGLA 265
EQ++++ + +D ++ + G+AGTGK+ +++ + +++N K V +T STG A
Sbjct: 5 EQQQLLNKIVRDDSQDKQVLLMINGAAGTGKTFLIKLIENSMNRSVRKRVVLMTGSTGKA 64
Query: 266 AVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDK 325
A IGG T++ G+ N ++R K T+++I+DEI+++ + LD
Sbjct: 65 AKAIGGRTLHCTIGL------PNEKPEDLERLKYQAFICVTTRLIIIDEITLLASWHLDA 118
Query: 326 LDAIGRGLLNRTKP-FGGIQLVFTGDFFQL 354
D + + RT FGG+ ++ GD QL
Sbjct: 119 TDMVLKRTPKRTDALFGGLSIILVGDLRQL 148
>CE05256 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 169
Score = 64.7 bits (156), Expect = 5e-10
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 12/150 (8%)
Query: 211 EQRKVIEYVCKD-----RLNVFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTASTGLA 265
EQ+ ++ + +D ++ + G+A TGK+ +++ + +++N GK V +T STG A
Sbjct: 5 EQQDLLNKIIRDDSKNKQVLLMINGAARTGKTFLIKLIENSMNRSAGKRVVLMTGSTGKA 64
Query: 266 AVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDK 325
A IGG T++ G+ N ++ K+ + T+++I+DEI+++ + LD
Sbjct: 65 AKAIGGRTLHCTIGL------PNEKPEDLESLKSQAFIYATTRLIIIDEITLLASWHLDA 118
Query: 326 LDAIGRGLLNRTKP-FGGIQLVFTGDFFQL 354
D + + RT FGG+ ++ GD QL
Sbjct: 119 TDMVLKRTQKRTDALFGGLSIILVGDLRQL 148
>At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 996
Score = 62.4 bits (150), Expect = 2e-09
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 208 LTAEQRKV----IEYVCKDRLNVFYT-GSAGTGKSVILRTMISTLNAKYGKDAVAVTAST 262
+T+EQ+K+ ++ V DR VF+ G GTGK+ + + + + + +K D AS+
Sbjct: 544 VTSEQKKIYDEIMDAVLHDRGGVFFVYGFGGTGKTFLWKLLSAAIRSK--GDISLNVASS 601
Query: 263 GLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
G+AA+ + GG T + G+ I +++ + R K ++I DE M+ +
Sbjct: 602 GIAALLLDGGRTTHSRFGIPINPNESSTC--NISRGSDLGELVKEANLIIWDETPMMSKH 659
Query: 322 FLDKLDAIGRGLLNRT--KPFGGIQLVFTGDFFQLPPV 357
+ LD R ++N KPFGG +VF GDF Q+ PV
Sbjct: 660 CFESLDRTLRDIMNNPGDKPFGGKGIVFGGDFRQVLPV 697
>CE26057_1 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 758
Score = 60.5 bits (145), Expect = 9e-09
Identities = 86/329 (26%), Positives = 136/329 (41%), Gaps = 46/329 (13%)
Query: 227 FYTGSAGTGKSVILRTMISTLNAKYGKDAVAV-TASTGLAAVNI-GGITINKFSGVGIGQ 284
F G G+GK+ + I+ N G++ +A TA TG+AA + GG T+ + I
Sbjct: 396 FLDGPGGSGKTYLY---IALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHD 452
Query: 285 GDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGYFLDKLDAIGRGLLNRTKPFGGIQ 344
+ L +R T V I DE SMI L+ D++ R + +PFGG
Sbjct: 453 RCESSLH---RRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKI 509
Query: 345 LVFTGDFFQLPPVPDRDSNKAGPIFCFESN-VWKYAIHKTILLQQVFRQT--DNELIDLL 401
++ GDF Q+ P+ ++ S C +S+ +W +T+ L R T D E ++ L
Sbjct: 510 VILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQ--FETLRLHSNMRVTTNDTEWMNFL 567
Query: 402 NGIRMGNTSGDTIKLIKKFE------APVEYDDGIEPTE--------LYPTRREVELSNK 447
G+ G+ + K+ F + D I+P+ L P +V L N+
Sbjct: 568 LGVGDGSLNDSESKVQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNE 627
Query: 448 RRLERLPGYEILYKAVD-----------FXXXXXXXXXXXXVMAEKEIKLKEDAQVMMLK 496
R G E +Y + D + +KLK+ + VM+L+
Sbjct: 628 DVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEFLNKMTPSTLPPHVLKLKKGSVVMLLR 687
Query: 497 NIDDT--LVNG------SLGRVLFFCTSA 517
N+D + L NG SLGR C A
Sbjct: 688 NLDVSGGLCNGSRFVVESLGRRTIGCRFA 716
>At5g37110 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1307
Score = 58.5 bits (140), Expect = 3e-08
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 575 LDKASKIVNGPGILSTIMFPVV--KFIDKQDIRGYQIKLVEPEEFSVGETEKDSAVRK-Q 631
+D ++NG + T M P + I D G+ + L+ + + +T+ +R+ Q
Sbjct: 1183 IDPIGGLMNGTRLRITQMGPFILQAMILTGDRAGHLV-LIPRLKLAPSDTKLPFRMRRTQ 1241
Query: 632 LPLMLCWAISIHKSQGQTIDRLKVDLKR-TFESGQVYVALSRAVSKDRLQITNFDPHKIK 690
LPL +C+A++I+KSQGQ++ R+ + L R F GQ+YVA+SR SK RL+I + +K
Sbjct: 1242 LPLAVCFAMTINKSQGQSLKRVGIFLLRPCFSHGQLYVAISRVTSKTRLKIRLW---MMK 1298
Query: 691 VNEKVK 696
V+ K K
Sbjct: 1299 VSHKSK 1304
>At3g13250 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1419
Score = 58.2 bits (139), Expect = 4e-08
Identities = 92/379 (24%), Positives = 155/379 (40%), Gaps = 83/379 (21%)
Query: 207 ELTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
+LT EQR + + + N F G GTGK+ I +T+ + + +K G+ + V AS
Sbjct: 939 KLTPEQRGIYDQITNAVFNDLGGVFFVYGFGGTGKTFIWKTLAAAVRSK-GQICLNV-AS 996
Query: 262 TGLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDG 320
+G+A++ + GG T + + + + + + +K + K ++I DE M+
Sbjct: 997 SGIASLLLEGGRTAHSRFSIPLNPDEFS--VCKIKPKSDLADLIKEASLIIWDEAPMMSK 1054
Query: 321 YFLDKLDAIGRGLLNRT--KPFGGIQLVFTGDFFQLPPVPDRDSNKAGPIFCFESN---- 374
+ + LD ++ R K FGG +VF GDF Q+ PV N AG S+
Sbjct: 1055 FCFEALDKSFSDIIKRVDNKVFGGKVMVFGGDFRQVLPV----INGAGRAEIVMSSLNAS 1110
Query: 375 -VWKYAIHKTILLQQVFRQTDNEL-----------IDLLNGIRMGNTS----GDTI---- 414
+W + K + L + R +N+L D L + G + G+ I
Sbjct: 1111 YLWDHC--KVLRLTKNMRLLNNDLSVDEAKEIQEFSDWLLAVGDGRVNEPNDGEVIIDIP 1168
Query: 415 --KLIKKFEAPVE------YDDGIEPTELY---------------PTRREVELSNKRRLE 451
LI++ + P+E Y D PT+L+ P +V N+ LE
Sbjct: 1169 EELLIQEADNPIEAISREIYGD---PTKLHEISDPKFFQRRAILAPKNEDVNTINQYMLE 1225
Query: 452 RLPGYEILYKAVDFXXXXXXXXXXXXV-------------MAEKEIKLKEDAQVMMLKNI 498
L E +Y + D V M ++LK A VM+L+N+
Sbjct: 1226 HLDSEERIYLSADSIDPSDSDSLKNPVITPDFLNSIKVSGMPHHSLRLKVGAPVMLLRNL 1285
Query: 499 DDT--LVNGSLGRVLFFCT 515
D L NG+ ++ C+
Sbjct: 1286 DPKGGLCNGTRLQITQLCS 1304
Score = 52.4 bits (124), Expect = 2e-06
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDP- 686
R+Q PL + + ++I+KSQGQ+++++ + L K F GQ+YVALSR SK L+I D
Sbjct: 1341 RRQFPLSVAFVMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKE 1400
Query: 687 ---HKIKVNEKVKDFYQNL 702
K N K+ +QN+
Sbjct: 1401 GKIQKQTTNVVFKEVFQNI 1419
>At1g64410_2 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 687
Score = 58.2 bits (139), Expect = 4e-08
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 208 LTAEQRKV----IEYVCKDRLNVFYT-GSAGTGKSVILRTMISTLNAKYGKDAVAVTAST 262
+T EQ+K+ ++ V DR VF+ G GTGK+ + + + + + +K D AS+
Sbjct: 456 VTLEQKKIYDEIMDVVLHDRGGVFFVYGFGGTGKTFLWKLLSAAIRSK--GDISLNVASS 513
Query: 263 GLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
G+AA+ + GG T + G+ I +++ + R K ++I DE M+ +
Sbjct: 514 GIAALLLDGGRTAHSRFGIPINPNESSTC--NISRGLDFGELVKEANLIIWDEAHMMSKH 571
Query: 322 FLDKLDAIGRGLLNRT--KPFGGIQLVFTGDFFQL 354
+ LD R ++N KPFGG +VF GDF Q+
Sbjct: 572 CFESLDRTLRDIMNNPGDKPFGGKVIVFGGDFRQV 606
>At2g05640 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1308
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/166 (29%), Positives = 85/166 (50%), Gaps = 12/166 (7%)
Query: 207 ELTAEQRKV----IEYVCKDRLNVFYT-GSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
+LT EQRK+ IE V + VF+ G GTGK+ + +T+ + + ++ + V AS
Sbjct: 826 KLTVEQRKIYDQIIEAVYSNSGGVFFVNGFGGTGKTYLWKTLSTYIRSR--GEIVLNVAS 883
Query: 262 TGLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDG 320
+G+AA+ + GG T + + + + + + SL R K++I DE M+
Sbjct: 884 SGMAALLLDGGRTAHSRFAIPLQVNETSTCSISPDSDLASL--LLRAKLIIWDEAPMLHR 941
Query: 321 YFLDKLDAIGRGLL--NRTKPFGGIQLVFTGDFFQLPPVPDRDSNK 364
+ + LD + ++ + KPFGG + F GDF Q+ PV + S +
Sbjct: 942 HCYEALDRTLKDIVQADNHKPFGGKTITFGGDFRQILPVITKGSRE 987
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/79 (37%), Positives = 47/79 (58%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDLKR-TFESGQVYVALSRAVSKDRLQITNFDPH 687
R+Q P++ C+ ++I+KSQGQ++ + + L R F GQ+YVA+SR S+ L+I D
Sbjct: 1223 RRQFPVVPCFGMTINKSQGQSLSHVGIYLPRPVFSHGQLYVAVSRVKSRRGLKILIIDEE 1282
Query: 688 ----KIKVNEKVKDFYQNL 702
K N K+ +QNL
Sbjct: 1283 GNRGKTTTNVVFKEVFQNL 1301
>At3g30420 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 837
Score = 55.1 bits (131), Expect = 4e-07
Identities = 53/195 (27%), Positives = 88/195 (44%), Gaps = 16/195 (8%)
Query: 207 ELTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
+L +QR + + V K N F G GTGK+ + +T+IS L + GK+ + V +S
Sbjct: 348 KLNEQQRIIYDDVLKSVTNKEGKLFFLYGDGGTGKTFLYKTIISALRSN-GKNVMPVASS 406
Query: 262 TGLAAVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
A + GG T + + + I + I +K N + ++I DE M +
Sbjct: 407 AIAALLLPGGRTAHSWFKIPINVHE--DFICDIKIGSMLANVLSKVDLIIWDEAPMAHRH 464
Query: 322 FLDKLDAIGRGLLN------RTKPFGGIQLVFTGDFFQ-LPPVPDRDSNKAGPIFCFESN 374
+ +D R +L+ TK GG ++ GDF Q LP +P R + S
Sbjct: 465 TFEAVDRTLRDILSVGDEKALTKTLGGKTVLLGGDFRQILPVIPQRTRQETVSAAINRSY 524
Query: 375 VWKYAIHKTILLQQV 389
+W+ + HK +L Q +
Sbjct: 525 LWE-SCHKYLLSQNM 538
Score = 52.8 bits (125), Expect = 2e-06
Identities = 26/61 (42%), Positives = 41/61 (66%), Gaps = 1/61 (1%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDPH 687
R+Q P+ +C+A++++KSQGQT++R+ + L K F GQ+YVALSR S L + +
Sbjct: 752 RRQFPVRMCYAMTVNKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVLDTSKK 811
Query: 688 K 688
K
Sbjct: 812 K 812
>At1g54430 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1639
Score = 55.1 bits (131), Expect = 4e-07
Identities = 53/195 (27%), Positives = 90/195 (45%), Gaps = 16/195 (8%)
Query: 207 ELTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
+L +QR + + V K +N F G+ GTGK+ + +T+IS L + GK+ + V +S
Sbjct: 1150 KLNEQQRIIYDDVLKSVINKEGKLFFLYGAGGTGKTFLYKTIISALRSN-GKNVMPVASS 1208
Query: 262 TGLAAVNIGGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDGY 321
A + GG T + + I + + I +K N + ++I DE M +
Sbjct: 1209 AIAALLLPGGRTAHSRFKIPINVHEDS--ICDIKIGSMLANVLSKVDLIIWDEAPMAHRH 1266
Query: 322 FLDKLDAIGRGLLN------RTKPFGGIQLVFTGDFFQ-LPPVPDRDSNKAGPIFCFESN 374
+ +D R +L+ TK FGG ++ GDF Q LP +P + S
Sbjct: 1267 TFEAVDRTLRDILSVGDEKALTKTFGGKTVLLGGDFRQILPVIPQGTRQETVSAAINRSY 1326
Query: 375 VWKYAIHKTILLQQV 389
+W+ + HK +L Q +
Sbjct: 1327 LWE-SCHKYLLSQNM 1340
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/61 (44%), Positives = 41/61 (66%), Gaps = 1/61 (1%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDPH 687
R+Q P+ +C+A++I+KSQGQT++R+ + L K F GQ+YVALSR S L + +
Sbjct: 1554 RRQFPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVLDTSKK 1613
Query: 688 K 688
K
Sbjct: 1614 K 1614
>At2g07620 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1241
Score = 54.7 bits (130), Expect = 5e-07
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 207 ELTAEQRKVIEYVCKDRLN-----VFYTGSAGTGKSVILRTMISTLNAKYGKDAVAVTAS 261
++T+EQ+++ + + K L F G GTGK+ + +T+ + + K G +V V AS
Sbjct: 846 KMTSEQKEIYDEIMKAVLENSGGIFFVYGFGGTGKTFMWKTLSAAVRMK-GLISVNV-AS 903
Query: 262 TGLAAVNI-GGITINKFSGVGIGQGDANRLINMVKRNKTSLNRWKRTKVLIVDEISMIDG 320
+G+A + + GG T + G+ I D + N N K ++I DE M+
Sbjct: 904 SGIAFLLLQGGRTAHSRFGIPINPDDFTTC--HIVPNSDLANMLKEASLIIWDEAPMMSR 961
Query: 321 YFLDKLDAIGRGLLNRT--KPFGGIQLVFTGDFFQL 354
Y + LD ++ KPFGG +VF GDF Q+
Sbjct: 962 YCFESLDRSLNDVIGNVDGKPFGGKVVVFGGDFRQV 997
Score = 51.2 bits (121), Expect = 5e-06
Identities = 30/79 (37%), Positives = 46/79 (57%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDLKR-TFESGQVYVALSRAVSKDRLQITNFD-- 685
R+Q P+ + +A+ I KSQGQ++ +++ L R F GQ+YVALSR SK L++ D
Sbjct: 1161 RRQFPIAVAFAMRIKKSQGQSLKEVEIYLPRPVFSHGQLYVALSRVTSKKGLKVLIVDKE 1220
Query: 686 --PHKIKVNEKVKDFYQNL 702
+N K+ +QNL
Sbjct: 1221 GNTQSQTMNVVFKEIFQNL 1239
>At3g42100 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1752
Score = 53.9 bits (128), Expect = 8e-07
Identities = 32/79 (40%), Positives = 49/79 (61%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDP- 686
R+Q PL + +A++I+KSQGQ+++++ + L K F GQ+YVALSR SK L+I D
Sbjct: 1673 RRQFPLSVAFAMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKD 1732
Query: 687 ---HKIKVNEKVKDFYQNL 702
K N K+ +QN+
Sbjct: 1733 GNMQKQTTNVVFKEVFQNI 1751
>At1g35940 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1678
Score = 53.9 bits (128), Expect = 8e-07
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDP- 686
R+Q PL + +A++I+KSQGQ+++ + + L K F GQ+YVALSR SK L+I D
Sbjct: 1599 RRQFPLSVAFAMTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKD 1658
Query: 687 ---HKIKVNEKVKDFYQNL 702
K N K+ +QN+
Sbjct: 1659 GKLQKQTTNVVFKEVFQNI 1677
>At5g32630 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 856
Score = 52.0 bits (123), Expect = 3e-06
Identities = 32/79 (40%), Positives = 47/79 (58%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDP- 686
R+Q PL +A++I+KSQGQ++++ + L K F GQ+YVALSR SK L+I D
Sbjct: 777 RRQFPLSDAFAMTINKSQGQSLEQAGLYLPKLVFSHGQLYVALSRVTSKSGLKILILDKD 836
Query: 687 ---HKIKVNEKVKDFYQNL 702
K N K+ +QN+
Sbjct: 837 GDIQKQTTNVVFKELFQNI 855
>At4g03690 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 570
Score = 51.6 bits (122), Expect = 4e-06
Identities = 32/79 (40%), Positives = 47/79 (58%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFD-- 685
RKQ PL + +A+ I+KSQ Q++ + ++L K F GQ+YVA+SR SK RL++ D
Sbjct: 491 RKQFPLSVAFAMMINKSQRQSLANVGINLLKPVFSHGQLYVAMSRVKSKARLKVLITDSK 550
Query: 686 --PHKIKVNEKVKDFYQNL 702
K N K+ +QNL
Sbjct: 551 GKQKKETTNVIFKEIFQNL 569
>CE26961 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 80
Score = 50.8 bits (120), Expect = 7e-06
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 649 TIDRLKVDLKRTFESGQVYVALSRAVSKDRLQITNFDPHKIKVNEKVKDFYQNL 702
T+D ++ L+R F GQ YVALSRA S ++I FD ++ N KV DFY+++
Sbjct: 2 TLDCAEISLERVFADGQAYVALSRARSLAAIRIIGFDASCVRANSKVIDFYKSI 55
>At3g30560 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1473
Score = 50.4 bits (119), Expect = 9e-06
Identities = 30/79 (37%), Positives = 48/79 (59%), Gaps = 5/79 (6%)
Query: 629 RKQLPLMLCWAISIHKSQGQTIDRLKVDL-KRTFESGQVYVALSRAVSKDRLQITNFDPH 687
R+Q PL + +A++I+KSQGQ++ + + L K F GQ+YVA+SR SK L++ D
Sbjct: 1395 RRQFPLSVAFAMTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSK 1454
Query: 688 KIKVNEKV----KDFYQNL 702
+ NE K+ ++NL
Sbjct: 1455 GKQKNETTNVVFKEIFRNL 1473
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,502,410
Number of Sequences: 60738
Number of extensions: 1382902
Number of successful extensions: 3638
Number of sequences better than 1.0e-05: 27
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3553
Number of HSP's gapped (non-prelim): 59
length of query: 707
length of database: 30,389,216
effective HSP length: 114
effective length of query: 593
effective length of database: 23,465,084
effective search space: 13914794812
effective search space used: 13914794812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)