ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3396 check: MH R KOG0126 General function prediction only Predicted RNA-binding protein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3396 1157991 1157494 -166
(166 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 171 4e-43
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 141 5e-34
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 140 6e-34
SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM super... 137 7e-33
Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 135 2e-32
At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM super... 127 9e-30
7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 124 5e-29
CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 117 7e-27
Hs17459345 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 74 7e-14
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 70 1e-12
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 70 1e-12
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 69 3e-12
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 67 1e-11
At4g39260 [R] KOG0118 FOG: RRM domain 61 8e-10
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 60 1e-09
At4g13850 [R] KOG0118 FOG: RRM domain 59 2e-09
At2g21660 [R] KOG0118 FOG: RRM domain 59 2e-09
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 59 3e-09
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 59 3e-09
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 59 3e-09
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 59 4e-09
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 59 4e-09
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 59 4e-09
7302761 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 58 7e-09
SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor... 57 9e-09
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 57 9e-09
CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 57 9e-09
Hs9558733 [R] KOG0118 FOG: RRM domain 57 2e-08
Hs4502847 [R] KOG0118 FOG: RRM domain 56 3e-08
At5g64200 [A] KOG4207 Predicted splicing factor SR protein super... 56 3e-08
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 56 3e-08
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 55 3e-08
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 55 3e-08
At5g61030 [R] KOG0118 FOG: RRM domain 55 3e-08
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 55 4e-08
Hs4759098 [R] KOG0118 FOG: RRM domain 55 6e-08
At5g04280 [R] KOG0118 FOG: RRM domain 55 6e-08
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 54 7e-08
At2g37220 [R] KOG0118 FOG: RRM domain 54 7e-08
At2g16260 [R] KOG0118 FOG: RRM domain 54 1e-07
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 54 1e-07
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 1e-07
7290689 [A] KOG0131 Splicing factor 3b subunit 4 54 1e-07
Hs5803137 [R] KOG0118 FOG: RRM domain 53 2e-07
Hs4826972 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM supe... 53 2e-07
At1g17370 [R] KOG0118 FOG: RRM domain 53 2e-07
YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 52 3e-07
YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 52 3e-07
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 52 3e-07
At1g73530 [R] KOG0118 FOG: RRM domain 52 3e-07
At1g54080 [R] KOG0118 FOG: RRM domain 52 3e-07
CE27910 [A] KOG4207 Predicted splicing factor SR protein superfa... 52 4e-07
CE01891 [A] KOG4207 Predicted splicing factor SR protein superfa... 52 4e-07
At3g53460 [R] KOG0118 FOG: RRM domain 52 4e-07
7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 52 4e-07
At5g50250 [R] KOG0118 FOG: RRM domain 52 5e-07
At3g26420 [R] KOG0118 FOG: RRM domain 52 5e-07
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 51 6e-07
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 51 6e-07
YGR250c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 51 8e-07
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 51 8e-07
At3g14100 [R] KOG0118 FOG: RRM domain 51 8e-07
At3g08000 [R] KOG0118 FOG: RRM domain 51 8e-07
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 50 1e-06
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 50 1e-06
CE01044 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 50 1e-06
At5g19960 [R] KOG0118 FOG: RRM domain 50 1e-06
At2g21690 [R] KOG0118 FOG: RRM domain 50 1e-06
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 50 1e-06
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 50 1e-06
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 50 1e-06
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 50 1e-06
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 50 1e-06
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 1e-06
At5g54580 [R] KOG0118 FOG: RRM domain 50 1e-06
At4g24770 [R] KOG0118 FOG: RRM domain 50 1e-06
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 50 1e-06
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 50 2e-06
SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 50 2e-06
Hs22041301 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 49 2e-06
At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 49 2e-06
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 49 2e-06
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 49 3e-06
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 49 3e-06
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 49 3e-06
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 49 3e-06
At1g60900 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 49 3e-06
Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 49 4e-06
Hs14769296 [A] KOG4207 Predicted splicing factor SR protein supe... 49 4e-06
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 49 4e-06
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 49 4e-06
HsM13236563 [R] KOG0226 RNA-binding proteins 48 5e-06
Hs21359951 [R] KOG0226 RNA-binding proteins 48 5e-06
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 48 5e-06
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 48 5e-06
At4g36690 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 48 5e-06
At3g52380 [R] KOG0118 FOG: RRM domain 48 5e-06
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 48 7e-06
At1g74230 [R] KOG0118 FOG: RRM domain 48 7e-06
YHR086w [R] KOG0118 FOG: RRM domain 47 9e-06
HsM14916449 [R] KOG0118 FOG: RRM domain 47 9e-06
Hs21314767 [R] KOG0118 FOG: RRM domain 47 9e-06
CE16399 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 47 9e-06
At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 47 9e-06
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 47 9e-06
>YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 148
Score = 171 bits (433), Expect = 4e-43
Identities = 76/129 (58%), Positives = 103/129 (78%)
Query: 4 IRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDI 63
+ IQ+++++EL+ GIL P SWH+EYKD AYI G ++ ELTE DILT+FS+YG PVD+
Sbjct: 1 MNKIQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDV 60
Query: 64 KLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEE 123
L RD+ TG+S+GF +LKYEDQRSTILAVDNLNG K+ GR +++DH FYRP+ +Y E
Sbjct: 61 ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSLQKYYE 120
Query: 124 AVRQELEKD 132
AV++EL++D
Sbjct: 121 AVKEELDRD 129
>Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 351
Score = 141 bits (355), Expect = 5e-34
Identities = 76/142 (53%), Positives = 96/142 (67%), Gaps = 2/142 (1%)
Query: 1 MNQIRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCP 60
+ +++ I +L+ERE++ G+ + SWH EYKD A+I GG+ ELTE DI+ +FSQYG
Sbjct: 4 LTKVKLINELNEREVQLGVAD-KVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEI 62
Query: 61 VDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDH-AFYRPRSDEA 119
V+I LVRD+ TGKSKGF FL YEDQRSTILAVDN NG K+ GR IRVDH + YR D
Sbjct: 63 VNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
Query: 120 EYEEAVRQELEKDFAKTGDVPS 141
E ++ RQ EK PS
Sbjct: 123 EIDDVTRQLQEKGCGARTPSPS 144
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 140 bits (354), Expect = 6e-34
Identities = 72/130 (55%), Positives = 94/130 (71%), Gaps = 2/130 (1%)
Query: 1 MNQIRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCP 60
+ Q++++QK++ RE + GI E+SWH +YK+ AY+ GG+ +LTE D+L +FSQYG
Sbjct: 4 LTQVKNLQKINARESDLGI-SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEI 62
Query: 61 VDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAE 120
VD+ L+RD+ TGKSKGF FL YEDQRSTILAVDNLNGA V GR I+VDH + +E E
Sbjct: 63 VDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE-E 121
Query: 121 YEEAVRQELE 130
EE RQ E
Sbjct: 122 DEETRRQNRE 131
>SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 217
Score = 137 bits (345), Expect = 7e-33
Identities = 82/181 (45%), Positives = 104/181 (57%), Gaps = 19/181 (10%)
Query: 1 MNQIRSIQKLSERELECGILKP-ESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGC 59
MN IR I++L+E+EL+ KP SSWH +Y D AYI G + +L E DIL +FS++G
Sbjct: 1 MNSIRQIERLNEQELD----KPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGE 56
Query: 60 PVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDH-AFYRPRSDE 118
PVDI LVRD+ TGKSKGF FLKYEDQRST+LAVDN+ K+ RL+RVDH A Y+ E
Sbjct: 57 PVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKE 116
Query: 119 AEYEEAV-----RQELEKDFAKTGDVPSEPMKQ------ESVADPLDE--FADPMAAFLK 165
E V L T ++P K E P DE DPM ++
Sbjct: 117 KEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQNEVEQTLSPKDEKDLLDPMRDYIH 176
Query: 166 K 166
+
Sbjct: 177 R 177
>Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 272
Score = 135 bits (341), Expect = 2e-32
Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 3/132 (2%)
Query: 1 MNQIRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCP 60
+ +++ I KL+E E++ G+ + SWH EYKD A+I GG+ ELTE DI+ +FSQYG
Sbjct: 4 LTKVKLINKLNEGEVQLGVAD-KVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEI 62
Query: 61 VDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDH-AFYRPRSDEA 119
V+I LVRD+ TGKSKGF FL YEDQRSTILAVDN NG K+ GR IRVDH + YR +
Sbjct: 63 VNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKNSE 122
Query: 120 EYEEAVRQELEK 131
E ++A + EL+K
Sbjct: 123 EMDDATK-ELQK 133
>At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 161
Score = 127 bits (318), Expect = 9e-30
Identities = 64/126 (50%), Positives = 89/126 (69%), Gaps = 2/126 (1%)
Query: 4 IRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDI 63
++ Q ++ +EL+ GI E+SWH +YKD AY+ G + +LTE D+L +FSQYG VD+
Sbjct: 1 VKKTQSINAKELDLGIYD-EASWHAKYKDSAYVYVGELPYDLTEGDLLAVFSQYGEVVDL 59
Query: 64 KLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDH-AFYRPRSDEAEYE 122
LVRD+ TG+SK F F+ YEDQRST LAVDN+NGAKV GR+I+V+H Y R +E E
Sbjct: 60 NLVRDKGTGRSKRFAFVAYEDQRSTNLAVDNINGAKVLGRIIKVEHCGKYLKREEEDEET 119
Query: 123 EAVRQE 128
+ ++E
Sbjct: 120 KQKKRE 125
>7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 154
Score = 124 bits (312), Expect = 5e-29
Identities = 67/132 (50%), Positives = 87/132 (65%), Gaps = 5/132 (3%)
Query: 1 MNQIRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCP 60
+ ++++ KLSE EL+ G K SWH YKD A+I G LTE D++ +FSQYG
Sbjct: 4 LTNMKNVLKLSEHELQHGGKK---SWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEV 60
Query: 61 VDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHA--FYRPRSDE 118
V+I L+RD TGKSKGF FL YEDQRST+LAVDNLNG K+ R +RVDH + P+ +E
Sbjct: 61 VNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENE 120
Query: 119 AEYEEAVRQELE 130
EE +R +E
Sbjct: 121 KMDEETLRLYME 132
>CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 302
Score = 117 bits (293), Expect = 7e-27
Identities = 57/110 (51%), Positives = 77/110 (69%), Gaps = 1/110 (0%)
Query: 1 MNQIRSIQKLSERELECGILKP-ESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGC 59
+ I++ +++EREL G + SWH YKD A+I GG+ L+E D++ +FSQYG
Sbjct: 4 ITNIKNQNRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGE 63
Query: 60 PVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDH 109
++I L+RD+ TGKSKGF FL Y+DQRSTILAVDN NG + R+IRVDH
Sbjct: 64 VMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>Hs17459345 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 103
Score = 74.3 bits (181), Expect = 7e-14
Identities = 40/79 (50%), Positives = 54/79 (67%), Gaps = 4/79 (5%)
Query: 66 VRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHA--FYRPRSDEAEYEE 123
+RD+ TGKSKGF FL YE QRSTILA+DN NG K+ GR IRVDH ++ P+ D E +
Sbjct: 1 MRDKKTGKSKGFCFLCYEGQRSTILAIDNFNGIKIKGRTIRVDHVSNYWTPK-DSEEMDN 59
Query: 124 AVRQELEKDFAKTGDVPSE 142
++ EK + K G++P +
Sbjct: 60 VTKELQEKGYLK-GNMPRQ 77
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 70.5 bits (171), Expect = 1e-12
Identities = 34/80 (42%), Positives = 49/80 (60%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E TE + IFS+ G V +LV D+ TGK KG+GF +Y+DQ + + A+ NLNG
Sbjct: 21 GNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80
Query: 99 KVCGRLIRVDHAFYRPRSDE 118
+ GR +RVD+A +E
Sbjct: 81 EFSGRALRVDNAASEKNKEE 100
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 70.1 bits (170), Expect = 1e-12
Identities = 36/98 (36%), Positives = 55/98 (55%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E TE + IFS+ G V +LV D+ TGK KG+GF +Y+DQ + + A+ NLNG
Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 80
Query: 99 KVCGRLIRVDHAFYRPRSDEAEYEEAVRQELEKDFAKT 136
+ GR +RVD+A +E + +E + +T
Sbjct: 81 EFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGET 118
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 68.9 bits (167), Expect = 3e-12
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K + G + E TE + IFS+ G + +KLV D+ +GK KGFGF +Y+DQ + +
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 91 AVDNLNGAKVCGRLIRVDHA 110
A+ NLNG ++ GR +RVD+A
Sbjct: 73 AMRNLNGYEIGGRTLRVDNA 92
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 66.6 bits (161), Expect = 1e-11
Identities = 31/80 (38%), Positives = 54/80 (66%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
+ Q + G + +++E I +IFS+ G + IK+V D+ TGK KG+GF+++ D ++ +
Sbjct: 15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEV 74
Query: 91 AVDNLNGAKVCGRLIRVDHA 110
A+ NLNG ++ GR++RVD A
Sbjct: 75 AIRNLNGYELSGRILRVDSA 94
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 60.8 bits (146), Expect = 8e-10
Identities = 25/72 (34%), Positives = 49/72 (67%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ + D+ FSQ+G +D K++ D+ +G+S+GFGF+ ++D+++ A++ +NG
Sbjct: 11 GGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGK 70
Query: 99 KVCGRLIRVDHA 110
++ GR+I V+ A
Sbjct: 71 ELDGRVITVNEA 82
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 60.5 bits (145), Expect = 1e-09
Identities = 32/120 (26%), Positives = 63/120 (51%)
Query: 8 QKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVR 67
+K+ +E++ SS + + ++ G + ++T DI F+ +G D ++V+
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVK 128
Query: 68 DQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQ 127
D TGKSKG+GF+ + ++ A+ + G + GR IR + A +P + ++ YE +Q
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 188
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 59.3 bits (142), Expect = 2e-09
Identities = 28/81 (34%), Positives = 49/81 (59%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ +A + F+ +G VD K++ D+ TG+S+GFGF+ + D+ + A+ ++G
Sbjct: 40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
Query: 99 KVCGRLIRVDHAFYRPRSDEA 119
++ GR IRV+ A RP + A
Sbjct: 100 ELNGRHIRVNPANDRPSAPRA 120
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 59.3 bits (142), Expect = 2e-09
Identities = 26/72 (36%), Positives = 47/72 (65%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ + + T F+QYG +D K++ D+ TG+S+GFGF+ ++D+++ A++ +NG
Sbjct: 13 GGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQ 72
Query: 99 KVCGRLIRVDHA 110
+ GR I V+ A
Sbjct: 73 DLDGRSITVNEA 84
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 58.9 bits (141), Expect = 3e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G +H +TE + IF +G +I L++D TG+SKG+GF+ + D A++ LNG
Sbjct: 234 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 293
Query: 99 KVCGRLIRVDHAFYR 113
++ GR +RV H R
Sbjct: 294 ELAGRPMRVGHVTER 308
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 58.9 bits (141), Expect = 3e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G +H +TE + IF +G +I L++D TG+SKG+GF+ + D A++ LNG
Sbjct: 252 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 311
Query: 99 KVCGRLIRVDHAFYR 113
++ GR +RV H R
Sbjct: 312 ELAGRPMRVGHVTER 326
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 58.9 bits (141), Expect = 3e-09
Identities = 29/97 (29%), Positives = 54/97 (54%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
+D ++ G + ++T DI F+ +G D ++V+D TGKSKG+GF+ + ++
Sbjct: 103 QDHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 91 AVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQ 127
A+ + G + GR IR + A +P + ++ YE +Q
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 58.5 bits (140), Expect = 4e-09
Identities = 28/81 (34%), Positives = 45/81 (54%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G +H +TE + IF +G I+L+ D TG+SKG+GF+ + D A++ LNG
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query: 99 KVCGRLIRVDHAFYRPRSDEA 119
++ GR ++V H R + A
Sbjct: 315 ELAGRPMKVGHVTERTDASSA 335
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 58.5 bits (140), Expect = 4e-09
Identities = 32/120 (26%), Positives = 64/120 (52%)
Query: 8 QKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVR 67
+K+ +E++ SS + + ++ G + E+T DI + F+ +G D ++V+
Sbjct: 71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK 130
Query: 68 DQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQ 127
D TGKSKG+GF+ + ++ A+ ++ G + GR IR + A +P + ++ E +Q
Sbjct: 131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 190
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 58.5 bits (140), Expect = 4e-09
Identities = 32/120 (26%), Positives = 64/120 (52%)
Query: 8 QKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVR 67
+K+ +E++ SS + + ++ G + E+T DI + F+ +G D ++V+
Sbjct: 32 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK 91
Query: 68 DQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQ 127
D TGKSKG+GF+ + ++ A+ ++ G + GR IR + A +P + ++ E +Q
Sbjct: 92 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 151
>7302761 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 300
Score = 57.8 bits (138), Expect = 7e-09
Identities = 28/79 (35%), Positives = 46/79 (57%)
Query: 32 DQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILA 91
D+ I GG+ E+TE + F +G DI++ D + + +GF F++YE A
Sbjct: 4 DKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAA 63
Query: 92 VDNLNGAKVCGRLIRVDHA 110
+DN+N +++CGR IRV+ A
Sbjct: 64 IDNMNDSELCGRTIRVNLA 82
>SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 363
Score = 57.4 bits (137), Expect = 9e-09
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + +++E + IF+Q G KLV D TG KG+GF ++ D +T +AV LN +
Sbjct: 12 GNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNS 71
Query: 99 KVCGRLIRVDHAFYRPRSDEA-EYEEAVRQELEKDFA 134
++ R IRV+ PR +++ EY E + +E+ A
Sbjct: 72 ELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNA 108
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 57.4 bits (137), Expect = 9e-09
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 12 ERELECGILKPESSWHHEYKDQAYI-NFGGMHLELTEADILTIFSQYGCPVDIKLVRDQT 70
ERE E G E + YI NFG E+ + + +FSQ+G + +K++RD
Sbjct: 178 EREAELGAKAKEFT-------NVYIKNFGE---EVDDESLKELFSQFGKTLSVKVMRDPN 227
Query: 71 TGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHA 110
GKSKGFGF+ YE AV+ +NG ++ G++I V A
Sbjct: 228 -GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
>CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 331
Score = 57.4 bits (137), Expect = 9e-09
Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 24 SSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYE 83
+++ H K Y+ GG ++TE ++ F +G V I + D +GK +GFGF++++
Sbjct: 3 TNFPHNRKRTLYV--GGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFD 60
Query: 84 DQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQELEKDFAKTGDVPSE 142
+A+DN+N +++ G+ IRV+ A ++ ++ E K + + G+ +E
Sbjct: 61 MAEDAAMAIDNMNESELFGKTIRVNFARPPKATERSQKPVWADDEWLKKYGRGGEAAAE 119
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 56.6 bits (135), Expect = 2e-08
Identities = 28/71 (39%), Positives = 45/71 (62%)
Query: 40 GMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAK 99
G+ L TE D+ +FS+YG + +V DQ TG+S+GF F+ +E + A++ NG +
Sbjct: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184
Query: 100 VCGRLIRVDHA 110
+ GR IRVD++
Sbjct: 185 LDGRRIRVDYS 195
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 55.8 bits (133), Expect = 3e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 32 DQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILA 91
D+ + GG+ + E + +FS+YG ++ +V+D+ T +S+GFGF+ +E+ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 92 VDNLNGAKVCGRLIRVDHA 110
+ +NG V GR IRVD A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
>At5g64200 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 303
Score = 55.8 bits (133), Expect = 3e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 46 TEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLI 105
T D+ +F++YG VD+ + RD+ TG S+GF F++Y+ + AV+ L+G V GR I
Sbjct: 28 TADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREI 87
Query: 106 RVDHAFYRPRSDE 118
V A Y P +++
Sbjct: 88 TVQFAKYGPNAEK 100
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 55.8 bits (133), Expect = 3e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G +H +TE + IF +G I+L+ D TG+SKG+GF+ Y + A++ LNG
Sbjct: 340 GSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGF 399
Query: 99 KVCGRLIRVDHAFYR 113
++ GRL++V + R
Sbjct: 400 ELAGRLMKVGNVTER 414
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 55.5 bits (132), Expect = 3e-08
Identities = 29/79 (36%), Positives = 46/79 (57%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
I +H +L++ DI ++F +G L RD TTGK KG+GF++YE +S+ AV ++
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 96 NGAKVCGRLIRVDHAFYRP 114
N + G+ +RV A P
Sbjct: 288 NLFDLGGQYLRVGKAVTPP 306
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 55.5 bits (132), Expect = 3e-08
Identities = 29/79 (36%), Positives = 46/79 (57%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
I +H +L++ DI ++F +G L RD TTGK KG+GF++YE +S+ AV ++
Sbjct: 211 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 270
Query: 96 NGAKVCGRLIRVDHAFYRP 114
N + G+ +RV A P
Sbjct: 271 NLFDLGGQYLRVGKAVTPP 289
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 55.5 bits (132), Expect = 3e-08
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GGM + E + F++YG VD +++ D+ TG+S+GFGF+ + + A+ L+G
Sbjct: 45 GGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
Query: 99 KVCGRLIRVDHA 110
+ GR+++V++A
Sbjct: 105 DLHGRVVKVNYA 116
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 55.1 bits (131), Expect = 4e-08
Identities = 27/72 (37%), Positives = 42/72 (57%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + + TE + I + G V +LV D+ TGK KG+GF +Y+D+ + + A NL
Sbjct: 14 GNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSY 73
Query: 99 KVCGRLIRVDHA 110
++ GR +RVD A
Sbjct: 74 EINGRQLRVDFA 85
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 54.7 bits (130), Expect = 6e-08
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 40 GMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAK 99
G+ L TE D+ +FS+YG D+ +V DQ + +S+GF F+ +E+ A + NG +
Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183
Query: 100 VCGRLIRVD 108
+ GR IRVD
Sbjct: 184 LDGRRIRVD 192
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 54.7 bits (130), Expect = 6e-08
Identities = 27/90 (30%), Positives = 55/90 (61%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K+ + I GG+ E+T+ D+ FS++G +D +++ ++ TG+S+GFGF+ + D+R+
Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 91 AVDNLNGAKVCGRLIRVDHAFYRPRSDEAE 120
++ ++G R+I V+ A + D+ E
Sbjct: 64 SIREMHGRDFGDRVISVNRAEPKLGRDDGE 93
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 54.3 bits (129), Expect = 7e-08
Identities = 30/97 (30%), Positives = 49/97 (49%), Gaps = 6/97 (6%)
Query: 21 KPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFL 80
KPE+S H ++ G + E+ + F ++G + K++RD T K KG+GF+
Sbjct: 125 KPETSRHF------HVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 81 KYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSD 117
Y + A+D +NGA + R IR + A +P D
Sbjct: 179 SYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDED 215
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 54.3 bits (129), Expect = 7e-08
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + + + + ++FS+ G V+ +++ D+ +G+SKGFGF+ Y+ + A+ +L+GA
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Query: 99 KVCGRLIRVDHAFYRP 114
+ GR IRV A RP
Sbjct: 269 DLDGRQIRVSEAEARP 284
>At2g16260 [R] KOG0118 FOG: RRM domain
Length = 185
Score = 53.9 bits (128), Expect = 1e-07
Identities = 29/77 (37%), Positives = 45/77 (57%), Gaps = 1/77 (1%)
Query: 30 YKDQAYINF-GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRST 88
Y D Y F GG+ E I F+++G D K++ D+ TG+SKGF F+ ++D+ S
Sbjct: 39 YADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Query: 89 ILAVDNLNGAKVCGRLI 105
A+D +NG ++ GR I
Sbjct: 99 RTAIDRMNGQELDGRNI 115
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 37 NFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLN 96
NFGG ++ + + +FS+YG + +K++ D ++GKSKGFGF+ ++ + AV+ +N
Sbjct: 313 NFGG---DMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMN 368
Query: 97 GAKVCGRLIRVDHA 110
G + G+LI V A
Sbjct: 369 GRDINGQLIFVGRA 382
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 29 EYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRST 88
E K IN+ + +T+ ++ ++F+ G KLVRD+ TG+S G+GF+ Y +
Sbjct: 39 ESKTNLIINY--LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA 96
Query: 89 ILAVDNLNGAKVCGRLIRVDHAFYRPRSDE 118
+ AV + NG ++ + I+V +A RP +D+
Sbjct: 97 LRAVSSFNGLRLQNKTIKVSYA--RPSNDQ 124
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 53.5 bits (127), Expect = 1e-07
Identities = 41/135 (30%), Positives = 65/135 (47%), Gaps = 15/135 (11%)
Query: 7 IQKLSERELECGIL---------KP----ESSWHHEYKDQ-AYINFGGMHLELTEADILT 52
++ LSE + + GI KP ++S H + D A I G + +E+ E +
Sbjct: 59 VEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYD 118
Query: 53 IFSQYGCPVDI-KLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAF 111
FS +G + K++RD TGKSK F F+ + ++ A+D +NG +C R I V +AF
Sbjct: 119 TFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAF 178
Query: 112 YRPRSDEAEYEEAVR 126
+ E A R
Sbjct: 179 KKDHKGERHGSAAER 193
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG++ E + FS +G ++ +V+D+ T +S+GFGF+ + + +A+ +NG
Sbjct: 11 GGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGE 70
Query: 99 KVCGRLIRVDHA 110
+ GR IRVDHA
Sbjct: 71 SLDGRQIRVDHA 82
>Hs4826972 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)
Length = 174
Score = 52.8 bits (125), Expect = 2e-07
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 40 GMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAK 99
G+H E TE DI F++YG +I L D+ TG KG+ ++YE + A++ LNG
Sbjct: 79 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 138
Query: 100 VCGRLIRVDHAFYR 113
+ G+ I VD F R
Sbjct: 139 LMGQPISVDWCFVR 152
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E+T+A + T FS Y D +++ DQ TG+S+GFGF+ + +Q+ A+D + G
Sbjct: 144 GDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
Query: 99 KVCGRLIRVDHA 110
+ R IR + A
Sbjct: 204 WLGSRQIRCNWA 215
>YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 534
Score = 52.4 bits (124), Expect = 3e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MNQIRSIQKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCP 60
M+Q + S + + K E S K+ + GG++ + TE ++ F +YG
Sbjct: 126 MSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTV 185
Query: 61 VDIKLVRDQTTGKSKGFGFLKYEDQRS 87
D+K+++D TG+S+GFGFL +E S
Sbjct: 186 TDLKIMKDPATGRSRGFGFLSFEKPSS 212
>YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 296
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
+ G + + TE IL + S G +++K++ D TG+SKG+ F+++ D S+ AV NL
Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79
Query: 96 NGAKVCGRLIRVDHA 110
NG ++ R ++ ++
Sbjct: 80 NGYQLGSRFLKCGYS 94
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 52.4 bits (124), Expect = 3e-07
Identities = 31/87 (35%), Positives = 49/87 (55%), Gaps = 4/87 (4%)
Query: 21 KPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFL 80
KP S EY D+ + G + L + ++ +FS +G V K+++D+ TG SKG+GF+
Sbjct: 471 KPPSK---EY-DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Query: 81 KYEDQRSTILAVDNLNGAKVCGRLIRV 107
KY D + AV +NG + GR + V
Sbjct: 527 KYADVQMANTAVQAMNGYRFEGRTLAV 553
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 52.4 bits (124), Expect = 3e-07
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K + Y++ G+ TE + F Q+G + + +V D+ + KGF FL+YE + +
Sbjct: 76 KTKLYVS--GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMK 133
Query: 91 AVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQELEKDFAKTGDVP 140
A+ ++G + GR+I V+ A + RSD + R + +DF K P
Sbjct: 134 AIQGMHGKFLDGRVIFVEEA--KTRSDMS------RAKPRRDFPKPQSKP 175
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 52.4 bits (124), Expect = 3e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E+T+A + FS + D +++ DQ TG+S+GFGF+ + +Q+ A++ +NG
Sbjct: 153 GDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212
Query: 99 KVCGRLIRVDHA 110
V R IR + A
Sbjct: 213 WVSSRQIRCNWA 224
>CE27910 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 126
Score = 52.0 bits (123), Expect = 4e-07
Identities = 28/83 (33%), Positives = 46/83 (54%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
+ + + T D+ F +YG D+ + RD+ + +SKGFGF+++ ++R A+D
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 96 NGAKVCGRLIRVDHAFYRPRSDE 118
+G V GR +RV A Y SDE
Sbjct: 81 DGKLVDGRELRVTLAKYDRPSDE 103
>CE01891 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 196
Score = 52.0 bits (123), Expect = 4e-07
Identities = 28/83 (33%), Positives = 46/83 (54%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
+ + + T D+ F +YG D+ + RD+ + +SKGFGF+++ ++R A+D
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 96 NGAKVCGRLIRVDHAFYRPRSDE 118
+G V GR +RV A Y SDE
Sbjct: 81 DGKLVDGRELRVTLAKYDRPSDE 103
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 52.0 bits (123), Expect = 4e-07
Identities = 25/76 (32%), Positives = 45/76 (58%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + + + + +F++ G V+ +++ D+ +G+SKGFGF+ + A+++LNGA
Sbjct: 262 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGA 321
Query: 99 KVCGRLIRVDHAFYRP 114
+ GR IRV A RP
Sbjct: 322 DLDGRQIRVSEAEARP 337
>7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)
Length = 165
Score = 52.0 bits (123), Expect = 4e-07
Identities = 27/73 (36%), Positives = 42/73 (56%)
Query: 41 MHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKV 100
+H E E +I F YG +I L D+ TG SKG+ ++YE + + A + LNGA++
Sbjct: 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139
Query: 101 CGRLIRVDHAFYR 113
G+ I+VD F +
Sbjct: 140 MGQTIQVDWCFVK 152
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 51.6 bits (122), Expect = 5e-07
Identities = 26/80 (32%), Positives = 48/80 (59%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
I G + ++ + +FS++G VD ++V D+ TG+S+GFGF++ ++ +A+ L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 96 NGAKVCGRLIRVDHAFYRPR 115
+G + GR I+V+ A R R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 51.6 bits (122), Expect = 5e-07
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ ++ + F +YG V+ K+V D+ +G+S+GFGF+ ++++++ A+ +NG
Sbjct: 12 GGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGM 71
Query: 99 KVCGRLIRVDHA 110
+ GR I VD A
Sbjct: 72 DLDGRTITVDKA 83
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 51.2 bits (121), Expect = 6e-07
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+T+ ++ ++F G KLVRD+ TG+S G+GF+ Y D + A++ LNG ++ +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109
Query: 105 IRVDHAFYRPRS----DEAEY-----EEAVRQELEKDFAKTGDV 139
I+V +A RP S D Y + ++ELE+ F++ G +
Sbjct: 110 IKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 51.2 bits (121), Expect = 6e-07
Identities = 25/72 (34%), Positives = 42/72 (57%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + TE D+ FSQ G ++++V D+ TG+ +GF F+++ ++ + AVD NG
Sbjct: 9 GNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGV 68
Query: 99 KVCGRLIRVDHA 110
GR +RV+ A
Sbjct: 69 DFNGRALRVNLA 80
>YGR250c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 781
Score = 50.8 bits (120), Expect = 8e-07
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ L+ ++ +FS+YG + +KL+ D+T G+ G+GF+ Y L + LNG
Sbjct: 200 GGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELNGR 259
Query: 99 KVCGRLIRVDHAFYRPRSDEAEYEEAVRQELEKDF--AKTGDVP-SEPMKQESVADP 152
V G + +++ R + ++ + +F G++P P K E++ P
Sbjct: 260 TVNGSTLFINYHVERKERERIHWDHVKENNNDDNFRCLFIGNLPYHNPEKVETLITP 316
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 50.8 bits (120), Expect = 8e-07
Identities = 29/144 (20%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Query: 8 QKLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVR 67
+K EC +P++ +A + + + +E D+ T+F+Q+G +++ + R
Sbjct: 88 EKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR 147
Query: 68 DQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVRQ 127
+ GK +GFGF+++++ A+ +N ++ GR + VD A + + + + A+ +
Sbjct: 148 -KPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGE 206
Query: 128 ELEKDFAKTGDVPSEPMKQESVAD 151
E + V + ++E + +
Sbjct: 207 EKSHESKHQESVKKKGREEEDMEE 230
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 50.8 bits (120), Expect = 8e-07
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E+T+A + FS + D +++ DQ TG+S+GFGF+ + +Q+ A++ +NG
Sbjct: 149 GDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208
Query: 99 KVCGRLIRVDHA 110
+ R IR + A
Sbjct: 209 WLSSRQIRCNWA 220
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 50.8 bits (120), Expect = 8e-07
Identities = 22/77 (28%), Positives = 44/77 (56%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ + E + FS +G ++++ D+ +G+S+GFGF+ + ++ + A D ++G
Sbjct: 46 GGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGK 105
Query: 99 KVCGRLIRVDHAFYRPR 115
+ GR +R+ A R R
Sbjct: 106 GLLGRPLRISFALERVR 122
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 50.4 bits (119), Expect = 1e-06
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+T+ + ++F G KLVRD+ TG+S G+GF+ Y D + A++ LNG ++ +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 116
Query: 105 IRVDHAFYRPRS----DEAEY-----EEAVRQELEKDFAKTGDV 139
I+V +A RP S D Y + ++ELE+ F++ G +
Sbjct: 117 IKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 158
Score = 47.4 bits (111), Expect = 9e-06
Identities = 25/94 (26%), Positives = 50/94 (52%), Gaps = 4/94 (4%)
Query: 9 KLSERELECGILKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRD 68
+L + ++ +P S+ + A + G+ +T+ ++ +FSQYG + +++ D
Sbjct: 111 RLQTKTIKVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
Query: 69 QTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCG 102
Q TG S+G GF++++ + A+ LNG K G
Sbjct: 167 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 50.4 bits (119), Expect = 1e-06
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 23 ESSWHHEYKDQ-AYINFGGMHLELTEADILTIFSQYGCPVDI-KLVRDQTTGKSKGFGFL 80
++S H + D A I G + E+ E + FS +G + + K++RD +G SKGF F+
Sbjct: 98 KASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFI 157
Query: 81 KYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVR 126
+ ++ A++ +NG +C R I V +AF R E A R
Sbjct: 158 NFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAER 203
>CE01044 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)
Length = 142
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/73 (35%), Positives = 41/73 (55%)
Query: 41 MHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKV 100
+H E TE D+ FS+YG +I L D+ TG KG+ ++YE Q+ A+D N +
Sbjct: 62 IHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
Query: 101 CGRLIRVDHAFYR 113
G+ ++VD F +
Sbjct: 122 LGQNVKVDWCFVK 134
>At5g19960 [R] KOG0118 FOG: RRM domain
Length = 335
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ ++TE + +FS YG + +K+V D++ + K +GF+ + ++RS A+++++G
Sbjct: 10 GGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDMDGK 68
Query: 99 KVCGRLIRVD 108
+ GR +RV+
Sbjct: 69 SIGGRAVRVN 78
>At2g21690 [R] KOG0118 FOG: RRM domain
Length = 117
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 40 GMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRS---TILAVDNLN 96
G+ + E D+ IFS++G +D K++ D+ TGKS+ FGF+ +E+++S I+ +D
Sbjct: 13 GLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEE 72
Query: 97 GAKVCGRL--IRVDHAFYRPRSDEAEYE-EAVRQELEKDFAKTG 137
C + I V+ A R ++ AE+ E VR EK G
Sbjct: 73 SRSKCVNVGSITVEVARQRRKNRSAEFALELVRLINEKQKKMAG 116
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 50.4 bits (119), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (59%), Gaps = 4/66 (6%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVD----N 94
GG+ +TE D+ T F++YG ++ ++ DQ KS+GFGFL +E++ S + N
Sbjct: 101 GGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYIN 160
Query: 95 LNGAKV 100
LNG +V
Sbjct: 161 LNGKQV 166
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 50.1 bits (118), Expect = 1e-06
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 23 ESSWHHEYKDQ-AYINFGGMHLELTEADILTIFSQYGCPVDI-KLVRDQTTGKSKGFGFL 80
++S H++ D A I G + E+ E + FS +G + K++RD TG SKG+ F+
Sbjct: 88 KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 147
Query: 81 KYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSDEAEYEEAVR--------QELEKD 132
+ ++ A++ +NG +C R I V +AF + E A R + ++
Sbjct: 148 NFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRP 207
Query: 133 FAKTGDVPSEPMKQESVADPLDEFADP 159
D P P V L P
Sbjct: 208 HQLFADAPPPPSAPNPVVSSLGSGLPP 234
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 50.1 bits (118), Expect = 1e-06
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+T+ + ++F G KLVRD+ TG+ G+GF+ Y D A++ LNG K+ +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKT 109
Query: 105 IRVDHAFYRPRS 116
I+V +A RP S
Sbjct: 110 IKVSYA--RPSS 119
Score = 48.5 bits (114), Expect = 4e-06
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 44 ELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGR 103
E E+ + +F +G ++K++RD TT K KGFGF+ + +A+ +LNG ++ R
Sbjct: 286 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLAER 345
Query: 104 LIRV 107
+++V
Sbjct: 346 VLQV 349
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 50.1 bits (118), Expect = 1e-06
Identities = 28/97 (28%), Positives = 47/97 (47%), Gaps = 2/97 (2%)
Query: 35 YINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDN 94
++ G + E+ + F +G D K++RD T KSKG+GF+ Y + A++
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 163
Query: 95 LNGAKVCGRLIRVDHAFYRPRSDE--AEYEEAVRQEL 129
+NG + R IR + A +P E + Y E E+
Sbjct: 164 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEI 200
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 50.1 bits (118), Expect = 1e-06
Identities = 28/97 (28%), Positives = 47/97 (47%), Gaps = 2/97 (2%)
Query: 35 YINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDN 94
++ G + E+ + F +G D K++RD T KSKG+GF+ Y + A++
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 195
Query: 95 LNGAKVCGRLIRVDHAFYRPRSDE--AEYEEAVRQEL 129
+NG + R IR + A +P E + Y E E+
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEI 232
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 50.1 bits (118), Expect = 1e-06
Identities = 24/72 (33%), Positives = 44/72 (60%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + TE ++ FS G ++++V D+ TG+ +GF F+++ ++ S AV+ +NGA
Sbjct: 10 GNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGA 69
Query: 99 KVCGRLIRVDHA 110
+ GR +RV+ A
Sbjct: 70 EFNGRPLRVNLA 81
>At5g54580 [R] KOG0118 FOG: RRM domain
Length = 156
Score = 50.1 bits (118), Expect = 1e-06
Identities = 26/83 (31%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Query: 40 GMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAK 99
G+ T + T F+Q+G D K+V D+ +G SKGFGF++Y + + ++G
Sbjct: 62 GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 121
Query: 100 VCGRLIRVDHAFYRPRSDEAEYE 122
+ G +I ++A RPR Y+
Sbjct: 122 LDGWVIFAEYA--RPREQSQSYQ 142
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/85 (31%), Positives = 47/85 (54%)
Query: 30 YKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTI 89
Y+ + G + ++ + +FS++G V+ ++V D+ TG+S+GFGF+ D
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 90 LAVDNLNGAKVCGRLIRVDHAFYRP 114
A+ L+G + GR IRV+ A RP
Sbjct: 300 EAISALDGQNLEGRAIRVNVAEERP 324
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 50.1 bits (118), Expect = 1e-06
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+T+ ++ ++FS G KLVRD+ +G+S G+GF+ Y AV+ LNG ++ ++
Sbjct: 37 MTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKV 96
Query: 105 IRVDHAFYRPRSD 117
I+V +A RP S+
Sbjct: 97 IKVSYA--RPSSE 107
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 29 EYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRST 88
E K + G +H +TE + IF +Y V K+ D T KS G G+L +ED+
Sbjct: 86 ESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEA 145
Query: 89 ILAVDNLNGAKVCGRLIRV 107
A++ LN KV G+ IR+
Sbjct: 146 EKAMEELNYTKVNGKEIRI 164
>SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 422
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + E+ E ++ IF Q G +LV D +G+ KG+GF +Y D + AV NLN
Sbjct: 10 GNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNY 69
Query: 99 KVCGRLIRVD 108
R +RVD
Sbjct: 70 DAGTRRLRVD 79
>Hs22041301 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 209
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 29 EYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRST 88
E K+ + F G+ E T+ + + F Q+G P D ++RD T S GFGF+ Y +T
Sbjct: 9 EPKELGKLFFEGLSFETTDKSLRSHFEQWGTPTDCVVMRDSNTKHSGGFGFITY----AT 64
Query: 89 ILAVDNLNGAK---VCGRLIRVDHAFYRPRS 116
+ VD AK V GRL+ + A R S
Sbjct: 65 VEEVDVAKNAKPRNVDGRLVEPNRAVSREDS 95
>At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 177
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K+ Y+ GG+ E+ E+ + F +G D+K DQ K + FGF+ + ++
Sbjct: 12 KNTLYV--GGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASA 69
Query: 91 AVDNLNGAKVCGRLIRVDHA 110
A+DN++GA++ GR++ V++A
Sbjct: 70 AMDNMDGAELYGRVLTVNYA 89
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 49.3 bits (116), Expect = 2e-06
Identities = 30/116 (25%), Positives = 60/116 (50%), Gaps = 11/116 (9%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+++ +I ++F +G KL+RD+ TG+S G+GF+ Y Q A++ LNG ++ +
Sbjct: 121 MSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKT 180
Query: 105 IRVDHAFYRPRSDEAE---------YEEAVRQELEKDFAKTGDVPSEPMKQESVAD 151
I+V A RP S+ + + + +LE F+ G + + + +++ D
Sbjct: 181 IKVSIA--RPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITD 234
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/55 (41%), Positives = 37/55 (66%), Gaps = 2/55 (3%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQR--STILA 91
GG+ T+ + + FSQYG VD +++D+TT +S+GFGF+K++D T+LA
Sbjct: 15 GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
>Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 246
Score = 48.9 bits (115), Expect = 3e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 41 MHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKV 100
++L+ E + +FS+YG ++LVRD TG SKG+ F++Y+++R+ I A + +G +
Sbjct: 58 LNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVI 117
Query: 101 CGRLIRVDHAFYR 113
I VD+ R
Sbjct: 118 DQHEIFVDYELER 130
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 48.9 bits (115), Expect = 3e-06
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 45 LTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRL 104
+T+ ++ ++FS G KL+RD+ G S G+GF+ Y + A++ LNG ++ +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90
Query: 105 IRVDHAFYRPRSD 117
I+V +A RP S+
Sbjct: 91 IKVSYA--RPSSE 101
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 44 ELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGR 103
++ + + +F +YG +K++RD +GKSKGFGF++YE + AV +L+G + G+
Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 104 LIRVDHA 110
++ V A
Sbjct: 268 VLYVGRA 274
>At1g60900 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 568
Score = 48.9 bits (115), Expect = 3e-06
Identities = 28/87 (32%), Positives = 41/87 (46%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ TE I + +G LV+D+ TG SKG+ F Y+D T +A LNG
Sbjct: 359 GGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGI 418
Query: 99 KVCGRLIRVDHAFYRPRSDEAEYEEAV 125
K+ + + V A + E EE +
Sbjct: 419 KMGDKTLTVRRAIQGAIQPKPEQEEVL 445
>Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 344
Score = 48.5 bits (114), Expect = 4e-06
Identities = 30/91 (32%), Positives = 44/91 (47%), Gaps = 9/91 (9%)
Query: 36 INFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNL 95
+ G + + E DI FS YG +++ L G+GF+++ED R AV L
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYEL 55
Query: 96 NGAKVCGRLIRVDHAFYRPRSDEAEYEEAVR 126
NG ++CG + V+HA PR D Y R
Sbjct: 56 NGKELCGERVIVEHA-RGPRRDRDGYSYGSR 85
>Hs14769296 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 221
Score = 48.5 bits (114), Expect = 4e-06
Identities = 23/60 (38%), Positives = 39/60 (64%)
Query: 53 IFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFY 112
+F +YG D+ + RD+ T +S+GF F+++ D+R A+D ++GA + GR +RV A Y
Sbjct: 33 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 92
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 48.5 bits (114), Expect = 4e-06
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 54 FSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYR 113
FS +G + K+ D G+SKG+GF+++E + + A+D LNG + + + V H F R
Sbjct: 152 FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH-FVR 209
Query: 114 PRSDEAEYE-----------------EAVRQELEKDFAKTGDVPSE-PMKQES 148
R D A E E EL+K F K GD+ S MK +S
Sbjct: 210 -RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS 261
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 48.5 bits (114), Expect = 4e-06
Identities = 35/119 (29%), Positives = 54/119 (44%), Gaps = 4/119 (3%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + EL E I F+ +G I + D T K KGF F++YE LA++ +NGA
Sbjct: 135 GSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGA 194
Query: 99 KVCGRLIRVDHAFYRPRSDEAEYEEAVRQELEKDFAKTGDVPSEP-MKQESVADPLDEF 156
+ GR I+V P++ + E QE K F + P + +E + + F
Sbjct: 195 LMGGRNIKVGRPSNMPQAQQVIDEV---QEEAKSFNRIYVASIHPDLSEEDIKSVFEAF 250
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 48.1 bits (113), Expect = 5e-06
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 32 DQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILA 91
D I G + E+ + + FS++ + K++RD+ TGK+KG+GF+ ++D + A
Sbjct: 350 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 409
Query: 92 VDNLNGAKVCGRLIRVDHAFYRPRS 116
+ +NG V R I++ + ++ R+
Sbjct: 410 MREMNGKYVGSRPIKLRKSMWKDRN 434
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 48.1 bits (113), Expect = 5e-06
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 32 DQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILA 91
D I G + E+ + + FS++ + K++RD+ TGK+KG+GF+ ++D + A
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 92 VDNLNGAKVCGRLIRVDHAFYRPRS 116
+ +NG V R I++ + ++ R+
Sbjct: 439 MREMNGKYVGSRPIKLRKSMWKDRN 463
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 48.1 bits (113), Expect = 5e-06
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 12 ERELECGILKPESSWHHEYKDQAYI-NFGGMHLELTEADILTIFSQYGCPVDIKLVRDQT 70
ERE E G E YI NFG ++ + + +F ++G + +K++ D++
Sbjct: 178 EREAELGARAKEFP-------NVYIKNFGE---DMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 71 TGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHA 110
GKSKGFGF+ +E AVD +NG ++ G+ I V A
Sbjct: 228 -GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 48.1 bits (113), Expect = 5e-06
Identities = 23/72 (31%), Positives = 43/72 (58%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + + TE +I F+ G ++++V D+ TG+ +GF F+++ ++ AV+ LNG
Sbjct: 11 GNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGV 70
Query: 99 KVCGRLIRVDHA 110
GR +RV++A
Sbjct: 71 AFNGRNLRVNYA 82
>At4g36690 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 573
Score = 48.1 bits (113), Expect = 5e-06
Identities = 29/91 (31%), Positives = 46/91 (49%), Gaps = 2/91 (2%)
Query: 20 LKPESSWHHEYKDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGF 79
L P +S E D+ ++ GG+ TE+ + + +G LV+D+ TG SKG+ F
Sbjct: 347 LTPGASGGLEGPDRIFV--GGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
Query: 80 LKYEDQRSTILAVDNLNGAKVCGRLIRVDHA 110
Y+D T +A LNG K+ + + V A
Sbjct: 405 CVYQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 48.1 bits (113), Expect = 5e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + LT + F + K++ ++ TG+S+GFGF+ +E + A+ +NG
Sbjct: 224 GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283
Query: 99 KVCGRLIRVDHAFYR-------PRSDEAEYEEA 124
+V GR +R++ A R P +E E EEA
Sbjct: 284 EVEGRALRLNLASEREKPTVSPPSVEEGETEEA 316
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 47.8 bits (112), Expect = 7e-06
Identities = 28/88 (31%), Positives = 45/88 (50%), Gaps = 1/88 (1%)
Query: 44 ELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGR 103
E+TE + +F Q+G + LV+DQ K +GFGF+ Y + AVD LN + G+
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGK 329
Query: 104 LIRVDHAFYRPRSDEAEYEEAVRQELEK 131
+ V A + +E + + +LEK
Sbjct: 330 KLYVGRAQKKHEREEELRKRYEQMKLEK 357
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 47.8 bits (112), Expect = 7e-06
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
GG+ E + FS+YG VD K++ D+ TG+S+GF F+ + A+ L+G
Sbjct: 39 GGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQ 97
Query: 99 KVCGRLIRVDHAFYR 113
+ GR IRV++A R
Sbjct: 98 DLHGRRIRVNYATER 112
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 47.4 bits (111), Expect = 9e-06
Identities = 24/70 (34%), Positives = 40/70 (56%), Gaps = 1/70 (1%)
Query: 39 GGMHLELTEADILTIF-SQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNG 97
G + +TE+ + +F ++Y K+V DQ TG SKG+GF+K+ + LA+ + G
Sbjct: 168 GDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
Query: 98 AKVCGRLIRV 107
+ GR I+V
Sbjct: 228 VFLNGRAIKV 237
>HsM14916449 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 47.4 bits (111), Expect = 9e-06
Identities = 27/88 (30%), Positives = 46/88 (51%), Gaps = 2/88 (2%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K Y++ + LT D+ IFS+YG V + +++D+ T KSKG F+ + D+ S
Sbjct: 9 KSTVYVS--NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 91 AVDNLNGAKVCGRLIRVDHAFYRPRSDE 118
+N ++ GR+I+ A R+ E
Sbjct: 67 CTRAINNKQLFGRVIKASIAIDNGRAAE 94
>Hs21314767 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 47.4 bits (111), Expect = 9e-06
Identities = 27/88 (30%), Positives = 46/88 (51%), Gaps = 2/88 (2%)
Query: 31 KDQAYINFGGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTIL 90
K Y++ + LT D+ IFS+YG V + +++D+ T KSKG F+ + D+ S
Sbjct: 9 KSTVYVS--NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 91 AVDNLNGAKVCGRLIRVDHAFYRPRSDE 118
+N ++ GR+I+ A R+ E
Sbjct: 67 CTRAINNKQLFGRVIKASIAIDNGRAAE 94
>CE16399 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 207
Score = 47.4 bits (111), Expect = 9e-06
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 62 DIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGAKVCGRLIRVDHAFYRPRSD 117
DI LV D+ +G KGF ++ +E+++ A+ LNGA R+++V+ A R RSD
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRDRSD 95
>At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 747
Score = 47.4 bits (111), Expect = 9e-06
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G ++ + TE ++ IF Q+G D+ L+RD+ +S+G GF+KY + + + A+D LNG
Sbjct: 216 GSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGT 274
Query: 99 ---KVCGRLIRVDHAF-YRPRSDEAEYEEAVRQELEKDFAKTGDVPSEPMKQESVADPLD 154
+ C + + V A RP+ E+ ++ A + S P Q S P
Sbjct: 275 YTMRGCNQPLIVRFAEPKRPKPGES-----------REMAPPVGLGSGPRFQASGPRPTS 323
Query: 155 EFAD 158
F D
Sbjct: 324 NFGD 327
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 47.4 bits (111), Expect = 9e-06
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 39 GGMHLELTEADILTIFSQYGCPVDIKLVRDQTTGKSKGFGFLKYEDQRSTILAVDNLNGA 98
G + TE + + S+YG +++LVR TG S+G+GF++YE ++ + A ++ + +
Sbjct: 63 GRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHS 122
Query: 99 KVCGRLIRVDH 109
+ GR I VD+
Sbjct: 123 LIDGREIIVDY 133
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,161,445
Number of Sequences: 60738
Number of extensions: 419636
Number of successful extensions: 2061
Number of sequences better than 1.0e-05: 105
Number of HSP's better than 0.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1895
Number of HSP's gapped (non-prelim): 178
length of query: 166
length of database: 30,389,216
effective HSP length: 98
effective length of query: 68
effective length of database: 24,436,892
effective search space: 1661708656
effective search space used: 1661708656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)