ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV3414   suspect: LH   Z     KOG0613  Cytoskeleton                                                   Projectin/twitchin and related proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV3414 1162749 1160941 -603 
         (603 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs19747267 [Z] KOG0613 Projectin/twitchin and related proteins         52   3e-06

>Hs19747267 [Z] KOG0613 Projectin/twitchin and related proteins
          Length = 34350

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 60/223 (26%), Positives = 95/223 (41%), Gaps = 39/223 (17%)

Query: 7     KVPERPRRRITRSEEPEQLRSESEFEREKSGSKDSELDLPPVPKTRPNRKPLXXXXXXXX 66
             KVPE P++ I   ++P  +  + E    K   K   +   PVP   P  +          
Sbjct: 10986 KVPEVPKKLIPEEKKPTPVPKKVEAPPPKVPKKREPV---PVPVALPQEE---------- 11032

Query: 67    XXXXXXKPEPQIQAQLQPEAVIETEPTVEHPIVDELEAKLPVEQPVLDEVELDEPVTQEV 126
                     E   + ++ PE  +  E   E  ++ E E  LP E+ VL E E   P  +EV
Sbjct: 11033 --------EVLFEEEIVPEEEVLPE---EEEVLPEEEEVLPEEEEVLPEEEEIPPEEEEV 11081

Query: 127   EPSGELLPEESTIKESLEEQIIDDFADE-----PVEEECKEVASPELI---GDEA--IQD 176
              P  E +PEE       EE+++ +   +     PV E  K+V   +++    +EA   + 
Sbjct: 11082 PPEEEYVPEEEEFVP--EEEVLPEVKPKVPVPAPVPEIKKKVTEKKVVIPKKEEAPPAKV 11139

Query: 177   EELEKPVKEEPIIQTDDKTLAEAIVPSVCEE---SEADIAEEP 216
              E+ K V+E+ II   ++ +    V    EE   SE +I EEP
Sbjct: 11140 PEVPKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEP 11182


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.301    0.124    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,757,445
Number of Sequences: 60738
Number of extensions: 1328295
Number of successful extensions: 5142
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5117
Number of HSP's gapped (non-prelim): 14
length of query: 603
length of database: 30,389,216
effective HSP length: 112
effective length of query: 491
effective length of database: 23,586,560
effective search space: 11581000960
effective search space used: 11581000960
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)