ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3417 good U KOG2104 Intracellular trafficking, secretion, and vesicular transport Nuclear transport factor 2
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3417 1163350 1162976 -125
(125 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER009w [U] KOG2104 Nuclear transport factor 2 230 3e-61
SPAC1B9.01c [U] KOG2104 Nuclear transport factor 2 172 9e-44
At1g27310 [U] KOG2104 Nuclear transport factor 2 130 3e-31
At1g27970 [U] KOG2104 Nuclear transport factor 2 125 7e-30
7298448 [U] KOG2104 Nuclear transport factor 2 97 4e-21
Hs5031985 [U] KOG2104 Nuclear transport factor 2 92 1e-19
7295554 [U] KOG2104 Nuclear transport factor 2 85 1e-17
At1g11570 [U] KOG2104 Nuclear transport factor 2 82 1e-16
Hs17451119 [U] KOG2104 Nuclear transport factor 2 81 2e-16
CE06238 [U] KOG2104 Nuclear transport factor 2 80 4e-16
Hs22048431_2 [U] KOG2104 Nuclear transport factor 2 76 6e-15
At1g13730 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 65 1e-11
At2g03640 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 61 3e-10
At5g60980 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 55 1e-08
7299786 [T] KOG0116 RasGAP SH3 binding protein rasputin contains... 54 4e-08
7291644 [A] KOG4353 RNA export factor NXT1 52 1e-07
SPBP8B7.11 [T] KOG0116 RasGAP SH3 binding protein rasputin conta... 51 3e-07
Hs5031703 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 49 1e-06
Hs19923399 [T] KOG0116 RasGAP SH3 binding protein rasputin conta... 47 3e-06
At3g25150 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 47 4e-06
>YER009w [U] KOG2104 Nuclear transport factor 2
Length = 125
Score = 230 bits (586), Expect = 3e-61
Identities = 110/125 (88%), Positives = 122/125 (97%)
Query: 1 MSVDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQ 60
MS+DF++LAQ FT+FYYNQFD+DR+QLGNLYR +SMLTFET+QLQGAKDIVEKLVSLPFQ
Sbjct: 1 MSLDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQ 60
Query: 61 KVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
KV HRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHL+P+G+SYYV+NDIFR
Sbjct: 61 KVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
Query: 121 LNYSA 125
LNYSA
Sbjct: 121 LNYSA 125
>SPAC1B9.01c [U] KOG2104 Nuclear transport factor 2
Length = 123
Score = 172 bits (435), Expect = 9e-44
Identities = 81/120 (67%), Positives = 99/120 (82%)
Query: 4 DFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVA 63
D+++LA QFT+FYY FDSDR+QL +LYRE+SML+FE QLQG K IVEKLVSLPFQ+V
Sbjct: 3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQ 62
Query: 64 HRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRLNY 123
HRI+TLDAQP G V+VM+TG+LL+DEEQ QR+SQVFHL+ +YYV ND+FRLNY
Sbjct: 63 HRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRLNY 122
>At1g27310 [U] KOG2104 Nuclear transport factor 2
Length = 122
Score = 130 bits (327), Expect = 3e-31
Identities = 61/122 (50%), Positives = 90/122 (73%)
Query: 3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKV 62
+D ++A+ F E YY+ FD++R L +LY+E SMLTFE ++QG+++IV KL LPFQ+
Sbjct: 1 MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRLN 122
H ITT+D QP+ P G +LV ++G+L + EQ+ +FSQ+FHL+ +YYV+NDIFRLN
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIFRLN 120
Query: 123 YS 124
Y+
Sbjct: 121 YA 122
>At1g27970 [U] KOG2104 Nuclear transport factor 2
Length = 126
Score = 125 bits (315), Expect = 7e-30
Identities = 60/123 (48%), Positives = 88/123 (70%), Gaps = 1/123 (0%)
Query: 3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKV 62
+D ++++ F E YY+ FD++R L LY+E SMLTFE ++QG + IV KL SLPFQ+
Sbjct: 4 MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63
Query: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDIFRL 121
H I+T+D QP+ P +LV ++G+L + E++ +FSQ+FHLMP S+YV+NDIFRL
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123
Query: 122 NYS 124
NY+
Sbjct: 124 NYA 126
>7298448 [U] KOG2104 Nuclear transport factor 2
Length = 130
Score = 97.1 bits (240), Expect = 4e-21
Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 5/125 (4%)
Query: 1 MSVDFSSLAQQFTEFYYNQFD--SDRTQLGNLYRE-QSMLTFETTQLQGAKDIVEKLVSL 57
+++ + + ++F + YY FD ++R + N Y S +TFE Q+QGA I+EK+ SL
Sbjct: 3 LNLQYEDIGKEFVQQYYAIFDDPANRENVINFYNATDSFMTFEGNQIQGAPKILEKVQSL 62
Query: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYND 117
FQK+A ITT+D+QP S +G VL+++ G L D++ P FSQ+F L P G S +V +D
Sbjct: 63 SFQKIARVITTVDSQPTS-DGGVLIIVLGRLKCDDDP-PHAFSQIFLLKPNGGSLFVAHD 120
Query: 118 IFRLN 122
IFRLN
Sbjct: 121 IFRLN 125
>Hs5031985 [U] KOG2104 Nuclear transport factor 2
Length = 127
Score = 91.7 bits (226), Expect = 1e-19
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 5 FSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAH 64
+ + F + YY FD+DRTQLG +Y + S LT+E Q QG IVEKL SLPFQK+ H
Sbjct: 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQH 66
Query: 65 RITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRL 121
IT D QP +P+ ++ M+ G L DE+ F Q+F L ++ ND+FRL
Sbjct: 67 SITAQDHQP-TPDSCIISMVVGQLKADEDP-IMGFHQMFLLKNINDAWVCTNDMFRL 121
>7295554 [U] KOG2104 Nuclear transport factor 2
Length = 130
Score = 85.1 bits (209), Expect = 1e-17
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
Query: 1 MSVDFSSLAQQFTEFYYNQFD--SDRTQLGNLYRE-QSMLTFETTQLQGAKDIVEKLVSL 57
++ + + + F + YY FD ++R + N Y S +TFE Q+QGA I+EK+ SL
Sbjct: 3 LNPQYEDIGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQGAPKILEKVQSL 62
Query: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYND 117
FQK+ ITT+D+QP +G VL+ + G L D++ P FSQVF L +++V +D
Sbjct: 63 SFQKITRVITTVDSQPTF-DGGVLINVLGRLQCDDDP-PHAFSQVFFLKANAGTFFVAHD 120
Query: 118 IFRLN 122
IFRLN
Sbjct: 121 IFRLN 125
>At1g11570 [U] KOG2104 Nuclear transport factor 2
Length = 127
Score = 82.0 bits (201), Expect = 1e-16
Identities = 42/101 (41%), Positives = 62/101 (60%), Gaps = 3/101 (2%)
Query: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRIT 67
+A F YY+ FD+DR+ L +LY S+LTFE + G +I KL LPF + H I+
Sbjct: 12 VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71
Query: 68 TLDAQPASPN---GDVLVMITGDLLIDEEQNPQRFSQVFHL 105
T+D+QP+S G +LV ++G + + E +P RFSQV+ L
Sbjct: 72 TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112
>Hs17451119 [U] KOG2104 Nuclear transport factor 2
Length = 126
Score = 81.3 bits (199), Expect = 2e-16
Identities = 46/113 (40%), Positives = 68/113 (59%), Gaps = 3/113 (2%)
Query: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRIT 67
+ F + YY FD+DRTQLG +Y + S LT+E Q QG VEKL SLPFQK+ + +T
Sbjct: 10 IGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLT 69
Query: 68 TLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
D QP +P+ ++ ++ G L DE+ + F Q+F L+ + + ND+FR
Sbjct: 70 AQDHQP-TPDSCIIGVVVGQLKADEDP-IKGFHQMF-LLKNINDGFCANDMFR 119
>CE06238 [U] KOG2104 Nuclear transport factor 2
Length = 133
Score = 80.1 bits (196), Expect = 4e-16
Identities = 52/127 (40%), Positives = 75/127 (58%), Gaps = 11/127 (8%)
Query: 4 DFSSLAQQFTEFYYNQFD-----SDRTQLGNLYR-EQSMLTFETTQLQGAKDIVEKLVSL 57
D+ S+A+ F + YY++FD S L +LY E S +TFE Q +G I++K +L
Sbjct: 6 DYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKFTTL 65
Query: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQ-NPQRFSQVFHLMPEG-SSYYVY 115
F K+ IT +D+QP +G + VM+ G L DE+ NP FSQVF L P SY++
Sbjct: 66 GFTKIQRAITVIDSQPLY-DGSIQVMVLGQLKTDEDPINP--FSQVFILRPNNQGSYFIG 122
Query: 116 NDIFRLN 122
N+IFRL+
Sbjct: 123 NEIFRLD 129
>Hs22048431_2 [U] KOG2104 Nuclear transport factor 2
Length = 119
Score = 76.3 bits (186), Expect = 6e-15
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 5 FSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAH 64
+ + F YY FD+DR QLG +Y + S LT+E Q QG IVEKL SL FQK+ H
Sbjct: 7 WEQIGSSFIPHYYQLFDNDRPQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLRFQKIQH 66
Query: 65 RITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRL 121
IT D Q +P+ ++ M+ G L DE+++ + +++ ND+FRL
Sbjct: 67 SITAQDHQ-LTPHSCIISMVVGQLKADEDRHHGNIN---------NTWVCTNDMFRL 113
>At1g13730 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 428
Score = 65.5 bits (158), Expect = 1e-11
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSML-----TFETTQLQGAKDIVEKLVSL 57
VD +++ F E YYN +Q+ Y + S+L E ++ K I E+++S
Sbjct: 10 VDPNTIGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSF 69
Query: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYND 117
++ +I T D+Q + NG V+ ++TG L + E Q RFSQ F L+P SY+V ND
Sbjct: 70 DYEISKIQILTADSQASYMNG-VVTLVTGLLTVKEGQR-MRFSQSFFLVPLNGSYFVLND 127
Query: 118 IFR 120
+FR
Sbjct: 128 VFR 130
>At2g03640 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 423
Score = 60.8 bits (146), Expect = 3e-10
Identities = 38/124 (30%), Positives = 64/124 (50%), Gaps = 7/124 (5%)
Query: 2 SVDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTF-----ETTQLQGAKDIVEKLVS 56
SVD + F + YYN +++ Y E SM++ E ++ K I ++++S
Sbjct: 9 SVDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMS 68
Query: 57 LPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYN 116
+ ++ I T D+Q NG V+ ++TG L+I + ++FSQ F L+ SY+V N
Sbjct: 69 IDYKSSRIEILTADSQSTLKNG-VVTLVTG-LVIGNDGGRRKFSQSFFLVSRNGSYFVLN 126
Query: 117 DIFR 120
D FR
Sbjct: 127 DTFR 130
>At5g60980 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 459
Score = 55.5 bits (132), Expect = 1e-08
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFE-----TTQLQGAKDIVEKLVSLPFQKV 62
+ + F E YY+ + Y++ S LT T + + I +K++SL ++
Sbjct: 15 VGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKYEDY 74
Query: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
I T DAQ + G V+V++TG L ++ ++FSQ F L P+ Y+V ND+FR
Sbjct: 75 TAEIETADAQESHERG-VIVLVTGRLTGNDNVR-KKFSQSFFLAPQDKGYFVLNDVFR 130
>7299786 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 690
Score = 53.5 bits (127), Expect = 4e-08
Identities = 38/116 (32%), Positives = 58/116 (49%), Gaps = 4/116 (3%)
Query: 7 SLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTF-ETTQLQGAKDIVEKLVSLPFQKVAHR 65
S+ ++F YY + L Y S E+ + G ++I ++ L F +
Sbjct: 15 SVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAK 74
Query: 66 ITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEG-SSYYVYNDIFR 120
I+ +DAQ NG V+V +TG+L D Q +RF+Q F L + YYV+NDIFR
Sbjct: 75 ISQVDAQATLGNG-VVVQVTGELSNDG-QPMRRFTQTFVLAAQSPKKYYVHNDIFR 128
>7291644 [A] KOG4353 RNA export factor NXT1
Length = 133
Score = 52.0 bits (123), Expect = 1e-07
Identities = 35/118 (29%), Positives = 56/118 (46%), Gaps = 8/118 (6%)
Query: 9 AQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITT 68
A FT YY D+ R Q+G LY + + L++ G + I LP H++ T
Sbjct: 16 ADTFTRLYYASVDNRRQQIGRLYLDNATLSWNGNGAIGRQMIESYFQELPSSN--HQLNT 73
Query: 69 LDAQP-----ASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRL 121
LDAQP S L+M +G + ++Q ++F Q F + E + V +D +R+
Sbjct: 74 LDAQPIVDQAVSNQLAYLIMASGSVKFADQQ-LRKFQQTFIVTAENDKWKVVSDCYRM 130
>SPBP8B7.11 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 434
Score = 50.8 bits (120), Expect = 3e-07
Identities = 33/114 (28%), Positives = 62/114 (53%), Gaps = 7/114 (6%)
Query: 12 FTEFYYNQFDSDRTQLGNLYREQSMLTF----ETTQL-QGAKDIVEKLVSLPFQKVAHRI 66
F + YY + + +L Y ++S L E+ L G ++I K++ L FQ I
Sbjct: 22 FVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNCKVLI 81
Query: 67 TTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
+ +D+ AS NG +++ + G++ ++ + ++F+Q F L + + Y+V NDIFR
Sbjct: 82 SNVDSL-ASSNGGIVIQVLGEMS-NKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133
>Hs5031703 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 466
Score = 48.9 bits (115), Expect = 1e-06
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTF--------ETTQLQGAKDIVEKLVSLPF 59
+ ++F YY + L Y + S + G K+I K++S F
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 60 QKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGS---SYYVYN 116
+I +DA A+ N V+V + G LL + Q +RF Q F L PEGS +YV+N
Sbjct: 71 TNCHTKIRHVDAH-ATLNDGVVVQVMG-LLSNNNQALRRFMQTFVLAPEGSVANKFYVHN 128
Query: 117 DIFR 120
DIFR
Sbjct: 129 DIFR 132
>Hs19923399 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 482
Score = 47.4 bits (111), Expect = 3e-06
Identities = 31/78 (39%), Positives = 45/78 (56%), Gaps = 5/78 (6%)
Query: 46 GAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHL 105
G DI K++SL F + +I +DA +G V+V + G LL + Q ++F Q F L
Sbjct: 57 GQNDIHHKVLSLNFSECHTKIRHVDAHATLSDG-VVVQVMG-LLSNSGQPERKFMQTFVL 114
Query: 106 MPEGS---SYYVYNDIFR 120
PEGS +YV+ND+FR
Sbjct: 115 APEGSVPNKFYVHNDMFR 132
>At3g25150 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 486
Score = 47.0 bits (110), Expect = 4e-06
Identities = 33/105 (31%), Positives = 60/105 (56%), Gaps = 7/105 (6%)
Query: 16 YYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPAS 75
+ ++F + ++LG E++ L T+ LQ I +K+++L + ++ I T+D Q S
Sbjct: 37 HVHRFYQEISKLGR--PEENGLMSITSTLQA---IDKKIMALGYGVISAEIATVDTQE-S 90
Query: 76 PNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
G +V++TG L ++ + FSQ F L P+ + Y+V ND+FR
Sbjct: 91 HGGGYIVLVTG-YLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFR 134
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,165,373
Number of Sequences: 60738
Number of extensions: 267567
Number of successful extensions: 650
Number of sequences better than 1.0e-05: 20
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 20
length of query: 125
length of database: 30,389,216
effective HSP length: 101
effective length of query: 24
effective length of database: 24,254,678
effective search space: 582112272
effective search space used: 582112272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)