ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3429 suspect: LH U KOG2148 Intracellular trafficking, secretion, and vesicular transport Exocyst protein Sec3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3429 1163768 1167475 1236
(1236 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
7293990 [U] KOG2148 Exocyst protein Sec3 52 8e-06
>7293990 [U] KOG2148 Exocyst protein Sec3
Length = 841
Score = 51.6 bits (122), Expect = 8e-06
Identities = 36/143 (25%), Positives = 66/143 (45%), Gaps = 10/143 (6%)
Query: 1092 QETKRLFDKEKESYSEMLMNSSMPALVAFVQGAYSLIETSGGNGFVDPKQWAAYSEQNLS 1151
+E K+ ++ ++Y + L F +G ++ + G + A+S+Q L
Sbjct: 700 KEAKKCYNDALKAYVTQYFGRPLEKLNQFFEGVQ--LKVAQGVKETEISYQMAFSKQELR 757
Query: 1152 KILVSYTSQEVTALIGKLYNNMEAHFLSEANNKARDVLCQKLWSNIQGKVVSFYLMLYSL 1211
K++ Y ++EV + LY +E H E N L Q +W +Q + ++ Y L
Sbjct: 758 KVIAQYPAREVKKGLENLYKKVEKHLSEEEN------LLQVVWHAMQEEFIAQYNYLEER 811
Query: 1212 IEKHYKNT--NIKFSKNDIIAAF 1232
I+K Y N++F+ DI+A F
Sbjct: 812 IQKCYAGAMINLEFNIQDILAFF 834
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,213,139
Number of Sequences: 60738
Number of extensions: 2545528
Number of successful extensions: 6738
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6735
Number of HSP's gapped (non-prelim): 3
length of query: 1236
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1118
effective length of database: 23,222,132
effective search space: 25962343576
effective search space used: 25962343576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)