ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3441 good R KOG0354 General function prediction only DEAD-box like helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3441 1167506 1170652 1049
(1049 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIR002c [R] KOG0354 DEAD-box like helicase 958 0.0
SPAC9.05 [R] KOG0354 DEAD-box like helicase 355 2e-97
SPAC20H4.04 [R] KOG0354 DEAD-box like helicase 267 7e-71
7300752 [R] KOG0354 DEAD-box like helicase 207 9e-53
At1g35530 [R] KOG0354 DEAD-box like helicase 198 3e-50
Hs13449289 [A] KOG0701 dsRNA-specific nuclease Dicer and related... 67 1e-10
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 62 4e-09
Hs11545922 [R] KOG0354 DEAD-box like helicase 60 2e-08
At3g03300 [A] KOG0701 dsRNA-specific nuclease Dicer and related ... 59 4e-08
Hs7657516 [R] KOG0354 DEAD-box like helicase 58 7e-08
At5g20320 [A] KOG0701 dsRNA-specific nuclease Dicer and related ... 58 9e-08
CE09069 [R] KOG0354 DEAD-box like helicase 56 3e-07
At1g20920 [A] KOG0334 RNA helicase 56 3e-07
CE16988 [R] KOG0354 DEAD-box like helicase 56 3e-07
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 56 3e-07
At3g09620 [A] KOG0334 RNA helicase 56 3e-07
At1g01040 [A] KOG0701 dsRNA-specific nuclease Dicer and related ... 56 3e-07
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 55 6e-07
SPCC10H11.01 [A] KOG0334 RNA helicase 55 7e-07
CE23511 [R] KOG0354 DEAD-box like helicase 55 7e-07
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 55 7e-07
Hs13129142 [R] KOG0354 DEAD-box like helicase 54 1e-06
CE27336 [A] KOG0334 RNA helicase 54 2e-06
CE06239 [A] KOG0344 ATP-dependent RNA helicase 54 2e-06
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 53 2e-06
CE28031 [A] KOG0334 RNA helicase 53 2e-06
CE27427 [A] KOG0334 RNA helicase 53 2e-06
At3g43920 [A] KOG0701 dsRNA-specific nuclease Dicer and related ... 53 2e-06
ECU10g1680 [A] KOG0343 RNA Helicase 52 4e-06
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 52 5e-06
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 51 8e-06
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 51 8e-06
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 51 8e-06
>YIR002c [R] KOG0354 DEAD-box like helicase
Length = 993
Score = 958 bits (2477), Expect = 0.0
Identities = 505/940 (53%), Positives = 636/940 (66%), Gaps = 37/940 (3%)
Query: 85 VNRSVNQTVTRHRIPVQRDLFMNVLPNQQTFYEETHTDVSYGPTHHQLNEENLDEYIYPT 144
+N+SV +T+TR +PVQ+DL NVLP Q+T YEE DVS+GPTHH+L+ + L Y+YPT
Sbjct: 24 INKSVKETITRRAVPVQKDLHDNVLPGQKTVYEEIQRDVSFGPTHHELDYDALSFYVYPT 83
Query: 145 NYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLV 204
NYEVR YQY IV +LF+N LCAIPTG GKTFIASTVMLNY+RWTK +KIIFTAPTRPLV
Sbjct: 84 NYEVRDYQYTIVHKSLFQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLV 143
Query: 205 AQQIKACLGITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKDV 264
AQQIKACLGITGIP TAILLDKSRKNREEIW KRVFF TPQVVENDLKRGVL+PKD+
Sbjct: 144 AQQIKACLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQVVENDLKRGVLDPKDI 203
Query: 265 VLLVIDEAHRARGNYAYVELTKFIDRFNTSYRXXXXXXXXXXXXEGVQEVVNNLHISKIE 324
V LVIDEAHRA G+ AY + KFIDRFN+SYR EGVQEVVNNL ISKIE
Sbjct: 204 VCLVIDEAHRATGSSAYTNVVKFIDRFNSSYRLLALTATPASDLEGVQEVVNNLDISKIE 263
Query: 325 LRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVLQEAIQLGIYESCEPHQ 384
+RTE+S+D+ +YM +R +E IE+ L+ EIE+++EQ+G+A+ PVLQ+AI+LGIYE C+P Q
Sbjct: 264 IRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGMAVKPVLQQAIELGIYEECDPSQ 323
Query: 385 INAFVAMQQSQKIILNPSIPEGLKWKNFFILQLLSQVGHMYRRLRIYGLRAFYNYFQNKY 444
INAF AMQQSQKII NP+IPEG+KW+NFFILQLL+ VG M +RL+IYG+R F+NYFQNK
Sbjct: 324 INAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKC 383
Query: 445 TEFTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEPEFYSHEKLEYLNNELADFFT 504
TEFTTKY++KKSTNK AA F+Y PILK + ++C+ L +P+F H KL+ + +EL DFF
Sbjct: 384 TEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVGHGKLQCVRDELMDFFQ 443
Query: 505 MAPSDSRAIIFTELRESALEIVKSIDILNDGALRPHIFIGQAKGKEHFDEETYIRKNKPK 564
SDSR IIFTELRESALEIVK ID + D +RPHIFIGQA+ KE FDE Y RK+ PK
Sbjct: 444 KRGSDSRVIIFTELRESALEIVKFIDSVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPK 503
Query: 565 GRTKAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGRRTGSSEEAQLSGMNQKQQKKVISDF 624
GR K + RRTGSSEEAQ+SGMNQK QK+VI +F
Sbjct: 504 GRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNF 563
Query: 625 KKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGRIVLLFSGN 684
KKG YNVLVCTSIGEEGLDIGEVDLIIC+D+TSSPIKNIQRMGRTGRKRDG+IVLLFS N
Sbjct: 564 KKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSN 623
Query: 685 EKFKFEQAMNDYENLQTAITHNALEYTKSDRILPPNVQPKCEEKFIIISNENDEVNKLED 744
E +KFE+AM DY LQ I+ ++Y KSDRI+P ++ P+C E I I++EN+ +N++ED
Sbjct: 624 ESYKFERAMEDYSTLQALISKQCIDYKKSDRIIPEDIIPECHETLITINDENEIINEMED 683
Query: 745 SDEVIKYATQAMLGXXXXXXXXXXXXXXXXXXXXXXXXXFFMPDNVKEGFTSASSLLNKY 804
DEVI+YATQ M+G FFMPDNV+ SAS+L+NK+
Sbjct: 684 VDEVIRYATQCMMG--KKVKPKKAITKKKRVQENKKPKKFFMPDNVETSIVSASTLINKF 741
Query: 805 TINEFGEKISLTPSVSKKAIKPKKEWNMLDEIEYDSVEISPAKSQVEQPSQPHKPTTTQG 864
+NE G K +T ++ K +K + LD +E DS E A S +E T+
Sbjct: 742 LVNESGGKQLVTS--NENPSKKRKIFKALDNLENDSTE--EASSSLE----------TED 787
Query: 865 ILTPDETTNHIPSASQGSSVQTDSHTVQE-PVLKKLKLAHQIEDPS-----------TSI 912
D+ I G ++ ++ L LK H E P+ T I
Sbjct: 788 EEVSDDNNVFIAEGQNGCQKDLETAIIRTGESLTTLKPLHNFERPNMALFVNDCGLPTKI 847
Query: 913 EYY------SGYELVPQYGAT--DSAQMLTMQEQRHFLKKYVPDTVHWSIAPDLAK-SKT 963
E + + L + T + +L++ + F +Y+P+ V + + P+ + +K
Sbjct: 848 EKNVKDIRGNQHNLEKEKSCTVDKNNMVLSLDDWNFFRNRYIPEGVSFDVEPNFVQYTKG 907
Query: 964 RKIRHVPKIEEILNTCQDMHTNTREKIIGMNRTNALARSI 1003
K+ H K+ +I+ D + +++ I MN T LAR +
Sbjct: 908 VKVPHCHKVSKIITLFNDESNDNKKRTIDMNYTKCLARGM 947
>SPAC9.05 [R] KOG0354 DEAD-box like helicase
Length = 839
Score = 355 bits (911), Expect = 2e-97
Identities = 232/683 (33%), Positives = 348/683 (49%), Gaps = 110/683 (16%)
Query: 130 HQLNEENLDEYIYPTNYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWT 189
H+L+E +++YP N R YQ++IV+ ALFENVL A+PTG GKTFIA+ VM+NY RW
Sbjct: 55 HELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWF 114
Query: 190 KSSKIIFTAPTRPLVAQQIKACLGITGIPYSDTAILLDKSR-KNREEIWQQKRVFFTTPQ 248
S I+F APT+PLV QQ++AC ITGIP S TA L R + +Q + VFF TPQ
Sbjct: 115 PKSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQ 174
Query: 249 VVENDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFIDRFNTSYRXXXXXXXXXXXX 308
+ ND+K G+ + + LVIDEAHR+ GNYAYVE+ + N ++R
Sbjct: 175 TILNDIKHGICDRTRISCLVIDEAHRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKL 234
Query: 309 EGVQEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVL 368
E +Q V+++LHIS+IE+RTE+S+D+++Y+ +++ + + L EI ++ ++ + P+L
Sbjct: 235 EAIQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSILEPML 294
Query: 369 QEAIQLGIYESCEPHQINAFVAMQQSQKIIL--NPSIPEGLKWKNFFILQLLSQVGHMYR 426
Q+ + Y I +F +Q Q + + P KW L+ +
Sbjct: 295 QKLNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDILNTFDALATFAYPLN 354
Query: 427 RLRIYGLRAFYNYFQNKYTE-FTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEPE 485
L +G+R FY + E F + KK + + Y P++ D + L +
Sbjct: 355 LLLNHGIRPFYQKLREVEEECFVGRSGYKK---RIINHENYRPLM----DDIEILLRDQS 407
Query: 486 FYSHEKLEYLNNELADFFTMAPS-DSRAIIFTELRESALEIVKSIDILNDGALRPHIFIG 544
F H KLE+L + ++F + D+R +IF E+R SA EI++ + +RP IFIG
Sbjct: 408 FVGHPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPN-VRPAIFIG 466
Query: 545 QAKGKEHFDEETYIRKNKPKGRTKAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGRRTGSS 604
Q+ +RK G S
Sbjct: 467 QSA----------VRK---------------------------------------AAGMS 477
Query: 605 EEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQ 664
++ Q + + F+KG N L+ TSIGEEGLDIGEVD+IIC+D+++SPI+ +Q
Sbjct: 478 QKLQ---------NETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQ 528
Query: 665 RMGRTGRKRDGRI-VLLFSGNEKFKFEQAMNDYENLQ-TAITHNALEYT-KSDRILPPNV 721
RMGRTGRKR G I +LL G E+ K+E+A + Y LQ ++ L + KS RILP
Sbjct: 529 RMGRTGRKRKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSGRGLSLSEKSYRILPEKF 588
Query: 722 QPKCEEKFIIISNENDEV----NKLEDSDEVIKYATQAMLGXXXXXXXXXXXXXXXXXXX 777
+P C+++ I I EN+EV K++ ++ K
Sbjct: 589 RPVCDKRVIEIPKENEEVVVAPKKVQLRTKIKK--------------------------- 621
Query: 778 XXXXXXFFMPDNVKEGFTSASSL 800
FFMP+N GF +AS+L
Sbjct: 622 -----KFFMPENALNGFITASAL 639
>SPAC20H4.04 [R] KOG0354 DEAD-box like helicase
Length = 783
Score = 267 bits (682), Expect = 7e-71
Identities = 195/617 (31%), Positives = 293/617 (46%), Gaps = 83/617 (13%)
Query: 133 NEENLDEYIYPTNYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWTKSS 192
N + + +I+P + R YQ + ALF N+L A+PTG GKTFIA+ VMLNY+RW S
Sbjct: 96 NIDAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPES 155
Query: 193 KIIFTAPTRPLVAQQIKACLGITGIPYSDTAILLDKSRKNREEI-WQQKRVFFTTPQVVE 251
KIIF APT+PL+ QQ AC + G+ TA L + +R + KRVFF TPQ ++
Sbjct: 156 KIIFLAPTKPLLLQQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQ 215
Query: 252 NDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFIDRFNTSYRXXXXXXXXXXXXEGV 311
NDLK +L+ K ++ L+ DEAHRA GN++Y ++ + + R N+ +R V
Sbjct: 216 NDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLGLTATPGSSTASV 275
Query: 312 QEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVLQEA 371
Q+VV+ LHISK+ +R E+S+D+ Y+ + ++I++ + E+ + P
Sbjct: 276 QKVVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFL 335
Query: 372 IQLGIYE-SCEPHQINAFVAMQQSQKI-ILNPSIPEGLKWKNFFILQLLSQVGHMYRRLR 429
Q + +CE I A+ +K + ++ K K LL H+ L
Sbjct: 336 RQKKLIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAHITYLLD 395
Query: 430 IYGLRAFYNYF---QNKYTEFTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEPEF 486
+G+ FY +NK + S T+K A FY L I
Sbjct: 396 CHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFA--FYLEHLHNKIQGLS-------- 445
Query: 487 YSHEKLEYLNNELADFF---TMAPSDSRAIIFTELRESALEIVKSIDILNDGALRPHIFI 543
+H K+ +L L + F + + R +IFTE R +A I ++ + +R +FI
Sbjct: 446 LNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRP-MVRASLFI 504
Query: 544 GQAKGKEHFDEETYIRKNKPKGRTKAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGRRTGS 603
GQA + TG
Sbjct: 505 GQAN-------------------------------------------------SAYSTGM 515
Query: 604 SEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNI 663
++ Q ++Q F+ G+ N LV TSIGEEGLDIG+ D+IIC+D++SSPI+ I
Sbjct: 516 NQMQQKETIDQ---------FRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTI 566
Query: 664 QRMGRTGRKRDGRI-VLLFSGNEKFKFEQAMNDYENLQTAITHNALEYTKSD--RILPPN 720
QRMGRTGRK+ G++ VLL E K+E++ Y +Q I K D R++P N
Sbjct: 567 QRMGRTGRKKSGKVFVLLTEDCEDSKWERSQVSYRRVQKVIESGKKIALKKDVPRLIPSN 626
Query: 721 VQPKCEEKFIIISNEND 737
+QP KF + N D
Sbjct: 627 IQPIF--KFQALQNNAD 641
>7300752 [R] KOG0354 DEAD-box like helicase
Length = 1383
Score = 207 bits (526), Expect = 9e-53
Identities = 174/611 (28%), Positives = 270/611 (43%), Gaps = 83/611 (13%)
Query: 140 YIYPTNYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAP 199
+IYP N +R YQ IV+ ALF+N L +PTG GKTFIA+ VM N+YRW KI+F AP
Sbjct: 50 WIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAP 109
Query: 200 TRPLVAQQIKACLGITGIPYSDTAILLDK-SRKNREEIWQQKRVFFTTPQVVENDLKRG- 257
TRPLV+QQI A I P DT L + R R E+W KRVFF TPQVV +D+
Sbjct: 110 TRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEAD 169
Query: 258 ---VLNPKDVVLLVIDEAHRARGNYAYVELTKFIDRFNTSYRXXXXXXXXXXXXEGVQEV 314
+ L+V+DEAHRA+G YAY ++ + N +R E V V
Sbjct: 170 GECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRTMEDVAAV 229
Query: 315 VNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVLQEAIQL 374
NL+IS +++R + S+DV Y+ RR I + L I+E E++ I P L++ ++
Sbjct: 230 CRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEA 289
Query: 375 GIYESCEPHQINAFVAMQQSQKIILNPSIPEGLKWKNFFILQLLSQVGHMYRRLRI---Y 431
I++ + + + QK + S + I+ + MY L + +
Sbjct: 290 EIFKGNKGTVSRNSLLFE--QKSFVERSAQGQRHPDHNIIMGNFAMCISMYHSLDLMERH 347
Query: 432 GLRAFYNYFQNKYTEFTTKYSMKKSTN-KTAANFFYSPILKTVIDKCKRRLEEPEF---- 486
GLR F N F + + K+ + + N + + +D + E
Sbjct: 348 GLRVFVNNF-DADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTNGEVPPLP 406
Query: 487 ----YSHEKLEYLNNELADFFTMAPSDSRAIIFTELRESALEIVKSIDILNDGALRPHIF 542
+ H K E L L F P DSRAI+F E RES + ++ + + + LRP F
Sbjct: 407 SDLDFGHAKYEKLRQVLVQHFQANP-DSRAIVFCEYRESVM-LIHRLLLQHRPVLRPRCF 464
Query: 543 IGQAKGKEHFDEETYIRKNKPKGRTKAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGRRTG 602
+GQ G T A T R+G
Sbjct: 465 VGQ-------------------GSTVGA-------------SYALTQKQQLQIMTDFRSG 492
Query: 603 SSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKN 662
+S + + ++ G ++VC I C + + I+
Sbjct: 493 TSNVLVATSIGEE-------GLDVGEVEMIVCFDI--------------CSTNPTRFIQR 531
Query: 663 IQRMGRTGRKRDGRIVLLFS-GNEKFKFEQAMNDYENLQTAITHNALE----YTKSDRIL 717
I R TGRK++G +V+L + G E+ + + + + + + ++++ Y ++ R++
Sbjct: 532 IGR---TGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNPRMV 588
Query: 718 PPNVQPKCEEK 728
P QPKCEEK
Sbjct: 589 PSKFQPKCEEK 599
>At1g35530 [R] KOG0354 DEAD-box like helicase
Length = 1324
Score = 198 bits (504), Expect = 3e-50
Identities = 136/425 (32%), Positives = 206/425 (48%), Gaps = 24/425 (5%)
Query: 132 LNEENLDEYIYPTNYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWTKS 191
++ E +IYP +R YQ+ I + ALF N L A+PTG GKT IA+ VM NY+RW
Sbjct: 99 IDPEAAKTWIYPGFVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQ 158
Query: 192 SKIIFTAPTRPLVAQQIKACLGITGIPYSDTAILLDKS-RKNREEIWQQKRVFFTTPQVV 250
KI+F AP+RPLV QQI+AC I GIP T L ++ R +W+ KRVFF TPQV+
Sbjct: 159 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVL 218
Query: 251 ENDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFIDRFNTSYRXXXXXXXXXXXXEG 310
E D++ G +V LVIDEAHRA GNY+Y + + + R +
Sbjct: 219 EKDIQSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSKTQA 278
Query: 311 VQEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVLQE 370
+Q +++NL IS +E R E DV Y+ R E+IE+ L + ++V +++ I P
Sbjct: 279 IQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIRPYAVR 338
Query: 371 AIQLGI-----YESCEPHQINAFVAMQQSQKIILNPSIPEGLKWKNFFILQLLSQVGHMY 425
G+ ++ PH++ +A + ++ L P +P L + H+
Sbjct: 339 LKNFGVNLNRDIQTLSPHEV--LMARDKFRQAPL-PGLPHVNHGDVESCFAALITLYHIR 395
Query: 426 RRLRIYGLRAFYNYFQNKYTEFTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEPE 485
+ L +G+R Y + K E M K+ + ++RL
Sbjct: 396 KLLSSHGIRPAYEMLEEKLKEGPFARLMSKNEDIRMTKLL-----------MQQRLSHGA 444
Query: 486 FYSHEKLEYLNNELADFFTMA-PSDSRAIIFTELRESALEIVKSIDILNDGALRPHIFIG 544
KL + L D F + P SR IIF+ R S +I+ ++ + D ++ FIG
Sbjct: 445 --PSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGD-MVKATEFIG 501
Query: 545 QAKGK 549
Q+ GK
Sbjct: 502 QSSGK 506
Score = 94.7 bits (234), Expect = 7e-19
Identities = 46/76 (60%), Positives = 57/76 (74%)
Query: 602 GSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIK 661
G S L G +QK Q+ V+ F+ G +NV+V TSIGEEGLDI EVDL+ICFD+ SP++
Sbjct: 501 GQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 560
Query: 662 NIQRMGRTGRKRDGRI 677
IQRMGRTGRK +GRI
Sbjct: 561 MIQRMGRTGRKNNGRI 576
>Hs13449289 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1924
Score = 67.0 bits (162), Expect = 1e-10
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 139 EYIYPTNYEVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRW--------TK 190
E I+ Y R+YQ +++ AL N + + TG+GKTFIAST +L +
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIASTTLLKSCLYLDLGETSARN 94
Query: 191 SSKIIFTAPTRPLVAQQIKACLGITGI---PYSDTAILLDKSRKNREEIWQQKRVFFTTP 247
+ +F + VAQQ+ A + + YS+ + +++ + + + +V T
Sbjct: 95 GKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTC 154
Query: 248 QVVENDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFID 289
V N LK G L+ D+ LLV DE H A ++ Y E K +
Sbjct: 155 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREFMKLCE 196
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 62.4 bits (150), Expect = 4e-09
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 600 RTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSP 659
R G EA ++Q+++++ + FK+ +NVLVCT +G GLDI VDL+I FD S
Sbjct: 261 RLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSG 320
Query: 660 IKNIQRMGRTGRK-RDGRIVLL 680
I R+GRT R R G + L
Sbjct: 321 KDYIHRVGRTARAGRSGTAITL 342
>Hs11545922 [R] KOG0354 DEAD-box like helicase
Length = 1025
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 602 GSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIK 661
G+ ++ M Q +QK+VIS F+ G N+L+ T++ EEGLDI E +++I + ++ I
Sbjct: 756 GAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 815
Query: 662 NIQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDY 696
+Q GR +++ SG+ + E +ND+
Sbjct: 816 MVQARGRARADESTYVLVAHSGSGVIEHE-TVNDF 849
>At3g03300 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 2042
Score = 58.9 bits (141), Expect = 4e-08
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 609 LSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGR 668
L +K+Q +++ DF++G+ N++V TSI EEGLD+ +L+I FD S+ IQ GR
Sbjct: 1083 LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 1142
Query: 669 TGRKRDGRIVLLFSGN 684
+ ++++ SG+
Sbjct: 1143 ARMQNSDYLMMVESGD 1158
>Hs7657516 [R] KOG0354 DEAD-box like helicase
Length = 925
Score = 58.2 bits (139), Expect = 7e-08
Identities = 35/95 (36%), Positives = 53/95 (54%), Gaps = 2/95 (2%)
Query: 598 GRRTGSSEEAQLSGMNQKQQKKVISDFK-KGIYNVLVCTSIGEEGLDIGEVDLIICFDST 656
G TG + Q +GM QK ++ FK G +N+L+ TS+ +EG+DI + +L+I ++
Sbjct: 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
Query: 657 SSPIKNIQRMGRTGRKRDGRIVLLFSGNEKFKFEQ 691
+ IK IQ GR GR R + LL S + EQ
Sbjct: 719 GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQ 752
>At5g20320 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1589
Score = 57.8 bits (138), Expect = 9e-08
Identities = 48/147 (32%), Positives = 68/147 (45%), Gaps = 11/147 (7%)
Query: 149 RQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNY-----YRWTKSSKIIFTAPTRPL 203
R+YQ ++ + A ENV+ + TG GKT IA VML Y K S IF APT L
Sbjct: 125 RRYQVELCKKATEENVIVYLGTGCGKTHIA--VMLIYELGHLVLSPKKSVCIFLAPTVAL 182
Query: 204 VAQQIKACLGITG--IPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVVENDLKRGVLNP 261
V QQ K + + KS E V TPQ++ ++L+ +
Sbjct: 183 VEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKM 242
Query: 262 KDVVLLVIDEAHRA--RGNYAYVELTK 286
+ + LL+ DE H A + N+ Y E+ K
Sbjct: 243 ECISLLIFDECHHAQQQSNHPYAEIMK 269
>CE09069 [R] KOG0354 DEAD-box like helicase
Length = 1134
Score = 56.2 bits (134), Expect = 3e-07
Identities = 53/213 (24%), Positives = 95/213 (43%), Gaps = 25/213 (11%)
Query: 95 RHRIPVQRDLFMNVLPNQQTFYEETHTDVSYGPTHHQLNEENLDEYIYPTNYEVRQYQYD 154
+ R ++ L + N++ E+ T + P N + + T +R YQ +
Sbjct: 323 KERDRIRLTLLKSQRTNEEAVGEDVCTTIRPQPKDSGYNPDAV-----VTELVLRTYQEE 377
Query: 155 IVRCALF-ENVLCAIPTGTGKTFIASTVMLNYYRWT----KSSKIIFTAPTRPLVAQQ-- 207
+V+ AL +N + PTG+GKT +A L + K S+++ P PLV QQ
Sbjct: 378 LVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLLVPKIPLVGQQKD 437
Query: 208 --IKACLG---ITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVVENDLKRGVLNPK 262
+K C G + G S++++ S R + V TPQ++ N L+ N +
Sbjct: 438 RFLKYCNGMYEVNGFHGSESSV----SGTGRRDEVIATHVSVMTPQILINMLQSVRQNER 493
Query: 263 ----DVVLLVIDEAHRARGNYAYVELTKFIDRF 291
D +++ DE H+A N+ YV + + + +
Sbjct: 494 LYVSDFSMMIFDEVHKAAKNHPYVLINQMVQEW 526
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 56.2 bits (134), Expect = 3e-07
Identities = 28/76 (36%), Positives = 46/76 (59%), Gaps = 1/76 (1%)
Query: 611 GMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTG 670
G +Q ++ ISDFK + N+L+ TS+ GLD+ E++L++ FD+ + + R+GRTG
Sbjct: 809 GKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 868
Query: 671 RK-RDGRIVLLFSGNE 685
R R G V S ++
Sbjct: 869 RAGRKGCAVTFISEDD 884
>CE16988 [R] KOG0354 DEAD-box like helicase
Length = 1037
Score = 55.8 bits (133), Expect = 3e-07
Identities = 42/152 (27%), Positives = 73/152 (47%), Gaps = 12/152 (7%)
Query: 597 TGRRTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDST 656
+G ++ A +S QKQ +K + F G +LV TS+ EEGLD+ E L+I ++
Sbjct: 736 SGLNKSTASSADISASKQKQMEK-LKMFADGEIRILVSTSVAEEGLDVPECSLVIKYNYA 794
Query: 657 SSPIKNIQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDYENLQ----TAITHNALEYTK 712
++ I ++QR GR GR + VL+ + E D E+L + I ++ E+ K
Sbjct: 795 TNEIAHVQRRGR-GRALNSECVLITNSIALRDQESNNRDKESLMSETISLIQNSPAEFRK 853
Query: 713 SDRILPPNVQPKCEEKFIIISNENDEVNKLED 744
+ P+ I+ + D+ K+E+
Sbjct: 854 CVDEESNKIWPR------ILREDTDKAQKIEE 879
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 55.8 bits (133), Expect = 3e-07
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 606 EAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQR 665
EA ++Q Q+++ ++ F+ G +N+LV T + GLD+ VDLII ++ ++ + R
Sbjct: 376 EALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHR 435
Query: 666 MGRTGRK-RDGRIVLLFSGNE 685
GRTGR + G +L++S ++
Sbjct: 436 TGRTGRAGKKGSAILIYSQDQ 456
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 55.8 bits (133), Expect = 3e-07
Identities = 28/72 (38%), Positives = 45/72 (61%), Gaps = 1/72 (1%)
Query: 615 KQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRK-R 673
+ Q+K ISDFK + N+L+ TS+ GLD+ E++L++ FD+ + + R+GRTGR R
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 674 DGRIVLLFSGNE 685
G V S ++
Sbjct: 711 KGCAVTFISEDD 722
>At1g01040 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1909
Score = 55.8 bits (133), Expect = 3e-07
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 147 EVRQYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRWTKSSK----IIFTAPTRP 202
+ R+YQ D++ A +N + + TG GKT IA ++ + ++ S +F P P
Sbjct: 248 QARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVP 307
Query: 203 LVAQQIKA-----CLGITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVVENDLKRG 257
LV QQ + C + D R RE ++ K+V T Q++ N L+
Sbjct: 308 LVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQRE--FESKQVLVMTAQILLNILRHS 365
Query: 258 VLNPKDVVLLVIDEAHRARGNYAY 281
++ + + LL++DE H A + Y
Sbjct: 366 IIRMETIDLLILDECHHAVKKHPY 389
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 55.1 bits (131), Expect = 6e-07
Identities = 27/85 (31%), Positives = 48/85 (55%)
Query: 612 MNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGR 671
M QK++ ++ DF++G VL+CT I G+D+ +V L+I +D ++ I R+GR+GR
Sbjct: 294 MPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR 353
Query: 672 KRDGRIVLLFSGNEKFKFEQAMNDY 696
+ + F NE + + + Y
Sbjct: 354 FGRKGVAINFVTNEDVRILRDIEQY 378
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 54.7 bits (130), Expect = 7e-07
Identities = 26/90 (28%), Positives = 49/90 (53%)
Query: 600 RTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSP 659
+ G + + G +Q + ISD+K G+++VL+ TS+ GLD+ + L++ +D +
Sbjct: 690 KRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHM 749
Query: 660 IKNIQRMGRTGRKRDGRIVLLFSGNEKFKF 689
+ R+GRTGR + + F E+ K+
Sbjct: 750 EDYVHRVGRTGRAGHTGVAVTFITPEQEKY 779
>CE23511 [R] KOG0354 DEAD-box like helicase
Length = 811
Score = 54.7 bits (130), Expect = 7e-07
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 597 TGRRTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDST 656
+G++ ++ A +S QKQ +K + F G +LV TS+ EEGLDI E L+I ++
Sbjct: 509 SGQKKSTASSADISASKQKQMEK-LKMFADGENQILVSTSVAEEGLDIPECSLVIKYNYA 567
Query: 657 SSPIKNIQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDYENLQT 701
++ ++QR GR R R+ + VL+ + E ENL T
Sbjct: 568 TNETAHVQRRGR-ARARNSKCVLITNSIALHVQESNNLAKENLMT 611
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 54.7 bits (130), Expect = 7e-07
Identities = 26/61 (42%), Positives = 35/61 (56%)
Query: 611 GMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTG 670
GM+Q ++ K DF K +L+CT + GLDI VD II +D P + I R+GRT
Sbjct: 367 GMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTA 426
Query: 671 R 671
R
Sbjct: 427 R 427
>Hs13129142 [R] KOG0354 DEAD-box like helicase
Length = 678
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/98 (29%), Positives = 50/98 (50%)
Query: 602 GSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIK 661
G+ +Q + M Q+ Q++VI F+ G N+LV TS+ EEGLDI ++++ + ++ I
Sbjct: 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464
Query: 662 NIQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDYENL 699
+Q GR + + G+ + K E E L
Sbjct: 465 MVQARGRAWADQSVYAFVATEGSRELKRELINEALETL 502
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 600 RTGSSEEAQL-SGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSS 658
RTG + A L G++Q + I+DFK G+ VLV TS+ GLD+ + L++ +D +
Sbjct: 272 RTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNH 331
Query: 659 PIKNIQRMGRTGR 671
+ R+GRTGR
Sbjct: 332 YEDYVHRVGRTGR 344
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/74 (37%), Positives = 45/74 (59%), Gaps = 1/74 (1%)
Query: 610 SGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRT 669
SG + K++ + + F++G VLVCT + GLD+ +V L+I +D +S + I R+GRT
Sbjct: 407 SGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRT 466
Query: 670 GRK-RDGRIVLLFS 682
GR + G V F+
Sbjct: 467 GRAGKSGHAVTYFT 480
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 614 QKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQ----RMGRT 669
QKQ++ + F+ G + VLV T++ GLDI EVDL+I SSP K+++ R GRT
Sbjct: 405 QKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVI----QSSPPKDVESYIHRSGRT 460
Query: 670 GRK-RDGRIVLLFSGNEKFKFEQ 691
GR R G + + E+++ Q
Sbjct: 461 GRAGRTGVCICFYQHKEEYQLVQ 483
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 600 RTGSSEEAQL-SGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSS 658
RTG + A L G++Q + I+DFK G+ VLV TS+ GLD+ + L++ +D +
Sbjct: 573 RTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNH 632
Query: 659 PIKNIQRMGRTGR 671
+ R+GRTGR
Sbjct: 633 YEDYVHRVGRTGR 645
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 600 RTGSSEEAQL-SGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSS 658
RTG + A L G++Q + I+DFK G+ VLV TS+ GLD+ + L++ +D +
Sbjct: 573 RTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNH 632
Query: 659 PIKNIQRMGRTGR 671
+ R+GRTGR
Sbjct: 633 YEDYVHRVGRTGR 645
>At3g43920 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1531
Score = 53.1 bits (126), Expect = 2e-06
Identities = 41/158 (25%), Positives = 71/158 (43%), Gaps = 2/158 (1%)
Query: 134 EENLDEYIYPTNYEVR-QYQYDIVRCALFENVLCAIPTGTGKTFIASTVMLNYYRW-TKS 191
++NLD P + Y+ + A N++ + TG K+ I ++ T
Sbjct: 29 DQNLDSVSSPMMTDSNGSYELKVYEVAKNRNIIAVLGTGIDKSEITKRLIKAMGSSDTDK 88
Query: 192 SKIIFTAPTRPLVAQQIKACLGITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVVE 251
IIF APT L +I+A + + Y + + + +E + + V TPQ++
Sbjct: 89 RLIIFLAPTVNLQCCEIRALVNLKVEEYFGAKGVDKWTSQRWDEEFSKHDVLVMTPQILL 148
Query: 252 NDLKRGVLNPKDVVLLVIDEAHRARGNYAYVELTKFID 289
+ L+ L + V LL+IDE H GN+ Y +L K +
Sbjct: 149 DVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKIFN 186
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 52.4 bits (124), Expect = 4e-06
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 611 GMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTG 670
GM+QKQ+ V F K +L CT +G GLD +VD++I +D + + R+GRT
Sbjct: 279 GMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTA 338
Query: 671 R--KRDGRIVLLFSGNEK 686
R +R V L G EK
Sbjct: 339 RNSERGESYVYLVHGEEK 356
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 52.0 bits (123), Expect = 5e-06
Identities = 26/89 (29%), Positives = 49/89 (54%)
Query: 612 MNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGR 671
M QK+++ ++ +F+ G VL+ T + GLD+ +V LII +D ++ I R+GR+GR
Sbjct: 311 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
Query: 672 KRDGRIVLLFSGNEKFKFEQAMNDYENLQ 700
+ + F N+ + + + Y + Q
Sbjct: 371 YGRKGVAINFVKNDDIRILRDIEQYYSTQ 399
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 51.2 bits (121), Expect = 8e-06
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 612 MNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGR 671
++Q+Q+ + + DF+ G N L+ T + G+DI ++++I +++ ++ + R+GRT R
Sbjct: 538 LSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTAR 597
Query: 672 K-RDGRIVLLFSGNEKFKFEQAMNDYENLQTAITHNALEYTKSDRI------LPPNVQPK 724
R GR + L ++ + + T + + L++ K ++ L P VQ
Sbjct: 598 AGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKV 657
Query: 725 CEEK 728
+E+
Sbjct: 658 LDEE 661
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 51.2 bits (121), Expect = 8e-06
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 614 QKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRK- 672
Q+Q+ + F+ G VL+CT++ G+D V+L+I +D +S ++ I R+GRTGR
Sbjct: 340 QQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAG 399
Query: 673 RDGRIVLLFSGNEK 686
G+ + F+ ++K
Sbjct: 400 NKGKAITFFTEDDK 413
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 51.2 bits (121), Expect = 8e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 606 EAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQR 665
EA ++Q Q+++ ++ F+ G +++LV T + GLD+ VDL+I ++ ++ + R
Sbjct: 388 EALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHR 447
Query: 666 MGRTGRKRDGRIVLLFSGNEK 686
GRTGR +L G ++
Sbjct: 448 TGRTGRAGKKGSAILIHGQDQ 468
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,049,466
Number of Sequences: 60738
Number of extensions: 2426841
Number of successful extensions: 7399
Number of sequences better than 1.0e-05: 33
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7332
Number of HSP's gapped (non-prelim): 66
length of query: 1049
length of database: 30,389,216
effective HSP length: 117
effective length of query: 932
effective length of database: 23,282,870
effective search space: 21699634840
effective search space used: 21699634840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)