ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3458 good K KOG1597 Transcription Transcription initiation factor TFIIB
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3458 1176601 1177671 357
(357 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR086w [K] KOG1597 Transcription initiation factor TFIIB 469 e-132
SPAC16E8.16 [K] KOG1597 Transcription initiation factor TFIIB 246 4e-65
7297699 [K] KOG1597 Transcription initiation factor TFIIB 179 4e-45
Hs4504193 [K] KOG1597 Transcription initiation factor TFIIB 178 9e-45
CE27396 [K] KOG1597 Transcription initiation factor TFIIB 173 3e-43
ECU06g1100i [K] KOG1597 Transcription initiation factor TFIIB 166 6e-41
At3g10330 [K] KOG1597 Transcription initiation factor TFIIB 154 2e-37
At2g41630 [K] KOG1597 Transcription initiation factor TFIIB 150 2e-36
At3g29380 [K] KOG1597 Transcription initiation factor TFIIB 124 2e-28
At4g10680 [K] KOG1597 Transcription initiation factor TFIIB 79 1e-14
CE02738 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 ... 59 8e-09
At3g57370 [K] KOG1597 Transcription initiation factor TFIIB 58 2e-08
At4g36650 [K] KOG1597 Transcription initiation factor TFIIB 56 7e-08
>YPR086w [K] KOG1597 Transcription initiation factor TFIIB
Length = 345
Score = 469 bits (1206), Expect = e-132
Identities = 224/330 (67%), Positives = 274/330 (82%), Gaps = 2/330 (0%)
Query: 19 GPNLNIVISCPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD 78
GPNLNIV++CPECKVYPPK+VERFSEGD+VCALCGLVLSD++VDTRSEWRTFSNDD NGD
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD 74
Query: 79 DPSRVGEASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKIT 138
DPSRVGEASNPLLDGN+L+TRIG+ + +D R T++LN+AQ K+++DKKDNE+QAA+AKIT
Sbjct: 75 DPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKIT 134
Query: 139 MMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILS 198
M+CDAAELPKIVKDCAKEAYKLC +E+ LKGKS ESIMA+ IL+GCRRAEV R+FKEI S
Sbjct: 135 MLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQS 194
Query: 199 LTNVRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQV 258
L +V+ KE GKT I+KNILR K++ GF IDT N++ Q T+IPRFCSHLGL +QV
Sbjct: 195 LIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNL--TYIPRFCSHLGLPMQV 252
Query: 259 ANAAEYIAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGG 318
+AEY AK K++ +AG+SP Y+ LLF++ I+ ++ QTLQVTEGT+K G
Sbjct: 253 TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312
Query: 319 YKALYEHKEKVVDPQLIESGVVKWDNLPRV 348
YK LYEH++K+VDPQLI +GVV DNLP V
Sbjct: 313 YKILYEHRDKLVDPQLIANGVVSLDNLPGV 342
>SPAC16E8.16 [K] KOG1597 Transcription initiation factor TFIIB
Length = 340
Score = 246 bits (628), Expect = 4e-65
Identities = 132/317 (41%), Positives = 192/317 (59%), Gaps = 7/317 (2%)
Query: 22 LNIVISCPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPS 81
L++ + C EC+ PP +VE FS GD VC CGLVL DRI+DTRSEWRTFSN D+ DPS
Sbjct: 14 LSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPS 73
Query: 82 RVGEASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMC 141
RVG+ +NPLL+G+ L T I G+ A L +AQ +S+ + + L AY +I MC
Sbjct: 74 RVGKVANPLLNGSQLDTTISSYDGAGAM----LAKAQGRSVQVRGEKNLLTAYKEIGAMC 129
Query: 142 DAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN 201
DA LPK++ D AK+ YK + + LKGKS +SI+A+ I + CR+ +V R+F EI +LTN
Sbjct: 130 DAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN 189
Query: 202 VRKKEIGKTFTIIKNILRE---KNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQV 258
V KKEIG+ + ++ +L E ++ A I + TSAE + RFC+ L L + V
Sbjct: 190 VPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSV 249
Query: 259 ANAAEYIAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGG 318
+AA +A+ + LAGRSP YM + L +P IS+ V++ T++
Sbjct: 250 QSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIRIA 309
Query: 319 YKALYEHKEKVVDPQLI 335
YK L+ +++++DP+ I
Sbjct: 310 YKLLHAERKELIDPKWI 326
>7297699 [K] KOG1597 Transcription initiation factor TFIIB
Length = 315
Score = 179 bits (455), Expect = 4e-45
Identities = 103/300 (34%), Positives = 162/300 (53%), Gaps = 16/300 (5%)
Query: 31 CKVYPPK-VVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNP 89
C +P ++E + GD++C+ CGLV+ DR++D SEWRTFSN+ ++G DPSRVG NP
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 72
Query: 90 LLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKI 149
LL G L+T IG GS + + Q++ + D L +A+ +I+ M D LPK
Sbjct: 73 LLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 150 VKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRKKEIGK 209
+ D A +K + + LKG+S ++ ++ + + CR+ V R+FKEI +++ + KKEIG+
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 192
Query: 210 TFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEYIAKHS 269
F + L D ITT F+ RFC++L L V AA +IAK +
Sbjct: 193 CFKLTLKALETSVDL---------ITTAD-----FMCRFCANLDLPNMVQRAATHIAKKA 238
Query: 270 KDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALYEHKEKV 329
+++++ GRSP YMA+ + S I V + T++ YK +Y H K+
Sbjct: 239 VEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKL 298
>Hs4504193 [K] KOG1597 Transcription initiation factor TFIIB
Length = 316
Score = 178 bits (452), Expect = 9e-45
Identities = 101/299 (33%), Positives = 164/299 (54%), Gaps = 19/299 (6%)
Query: 26 ISCPECKVYPPKV-VERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVG 84
++CP +P + VE + GD++C CGLV+ DR++D SEWRTFSND DPSRVG
Sbjct: 13 VTCPN---HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT-KDPSRVG 68
Query: 85 EASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAA 144
++ NPLL L+T IG+ G+ + ++ Q++ + D + A+ +IT M D
Sbjct: 69 DSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRI 128
Query: 145 ELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRK 204
LP+ + D +K +E++ LKG++ ++I ++ + + CR+ V R+FKEI +++ + K
Sbjct: 129 NLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISK 188
Query: 205 KEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEY 264
KEIG+ F +I L D ITTG F+ RFCS+L L QV AA +
Sbjct: 189 KEIGRCFKLILKALETSVDL---------ITTGD-----FMSRFCSNLCLPKQVQMAATH 234
Query: 265 IAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALY 323
IA+ + +++++ GRSP YMA+ + I V + T++ Y+ +Y
Sbjct: 235 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIY 293
>CE27396 [K] KOG1597 Transcription initiation factor TFIIB
Length = 306
Score = 173 bits (439), Expect = 3e-43
Identities = 108/296 (36%), Positives = 162/296 (54%), Gaps = 20/296 (6%)
Query: 30 ECKVYPP-KVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASN 88
+C ++P ++E GD+VC CGLV+ DR+VD +EWR+FSN+ ++G+DPSRVG N
Sbjct: 6 QCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNE-RSGNDPSRVGAPEN 64
Query: 89 PLLDGNHLTTRIGQA-QGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELP 147
PLL G L+T I GSD+ L AQ KS+ + D ++ AA + I M + LP
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDS--DNSLANAQRKSM-NNTDRQMTAAMSLIREMSERIHLP 121
Query: 148 KIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRKKEI 207
+ ++D A +K E + L+GK+ E+ A+ + + CR+ V R+FKEI +++ V KKEI
Sbjct: 122 RNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEI 181
Query: 208 GKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEYIAK 267
G+ F II L N++ Q ++ F+ RFC +L L + AA IAK
Sbjct: 182 GRCFKIIVRSLE-------TNLE-------QITSADFMSRFCGNLSLPNSIQAAATRIAK 227
Query: 268 HSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALY 323
+ D++++AGR+P YMA+ S I E TV+ YK LY
Sbjct: 228 CAVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLY 283
>ECU06g1100i [K] KOG1597 Transcription initiation factor TFIIB
Length = 312
Score = 166 bits (419), Expect = 6e-41
Identities = 110/326 (33%), Positives = 165/326 (49%), Gaps = 30/326 (9%)
Query: 25 VISCPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVG 84
V +C +C +VE + G VC CG ++ +RI+D SEWR+F D N DP R+G
Sbjct: 11 VQTCSDCGE-TQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG--DSNKVDPCRIG 67
Query: 85 EASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAA 144
ASNP L+ L T I G ++ V L++ Q K+ + + L+ IT C+ +
Sbjct: 68 SASNPYLESEQLDTMISTGGGMNSYV---LSKIQMKNSMRGPERALKHGMNLITAFCERS 124
Query: 145 ELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRK 204
L + + D A +K E ++LKGK+ E I+A+ I + CR+ E R+FKEI +T V+K
Sbjct: 125 NLSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQK 184
Query: 205 KEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEY 264
+EIG+ F +I L A + T NI I RFCS L L++++ A
Sbjct: 185 REIGRCFKLISPHLER-----MATMSTENI----------IARFCSDLNLNIKIQKIATE 229
Query: 265 IAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQ----VTEGTVKGGYK 320
IAK + ++ LAG+SP YM T LF +I + +Q VTE T+K YK
Sbjct: 230 IAKAAHELGCLAGKSPDSIAAAVIYMVTNLFP---EEKKIQKDIQFVTNVTEVTIKNTYK 286
Query: 321 ALYEHKEKVVDPQLIESGVVKWDNLP 346
L K ++ ++ + D LP
Sbjct: 287 ELLTFKYDIIPENMVNKESI--DKLP 310
>At3g10330 [K] KOG1597 Transcription initiation factor TFIIB
Length = 312
Score = 154 bits (389), Expect = 2e-37
Identities = 104/306 (33%), Positives = 157/306 (50%), Gaps = 18/306 (5%)
Query: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 6 CSDCKRHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
Query: 88 NPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAEL 146
NPLL LTT I + GS ++ L R Q++ D L A+ I M D L
Sbjct: 64 NPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRG--SNPDRGLIVAFKTIATMADRLGL 121
Query: 147 PKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKK 205
+KD A E YK +++ +G++Q++++A+ + + CR+ + R+ KEI S+ N KK
Sbjct: 122 VATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
Query: 206 EIGKTFTIIKNILREKNDRGFANIDTSN-ITTGQTSAETFIPRFCSHLGLSVQVANAAEY 264
EIG+ I L ++T + G A F+ RFCS+LG++ Q AA+
Sbjct: 182 EIGRAKEYIVKQL---------GLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQE 232
Query: 265 IAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALYE 324
+ S++ ++ RSP Y+ T L IS V EGT++ YK LY
Sbjct: 233 SVQKSEEFDI--RRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYP 290
Query: 325 HKEKVV 330
H K++
Sbjct: 291 HLSKII 296
>At2g41630 [K] KOG1597 Transcription initiation factor TFIIB
Length = 312
Score = 150 bits (380), Expect = 2e-36
Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 18/305 (5%)
Query: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
C +CK VV+ S GD +C+ CGLVL +D SEWRTF+N+ N DP+RVG +
Sbjct: 6 CTDCKKETELVVDH-SAGDTLCSECGLVLESHSIDETSEWRTFANESSN-SDPNRVGGPT 63
Query: 88 NPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAEL 146
NPLL + LTT I + GS ++ L R Q+++ D L A+ I M + L
Sbjct: 64 NPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRN--SNSDRGLIQAFKTIATMSERLGL 121
Query: 147 PKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKK 205
+KD A E YK +++ +G++Q+++ A+ + + CR+ + R+ KEI + N KK
Sbjct: 122 VATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKK 181
Query: 206 EIGKTFT-IIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEY 264
EIG+ I+K + E ++ G A F+ RFCS+L +S AA+
Sbjct: 182 EIGRAKDYIVKTLGLEPG---------QSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQE 232
Query: 265 IAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALYE 324
+ S++ ++ RSP Y+ T L + IS V EGT++ YK LY
Sbjct: 233 AVQKSEEFDI--RRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYP 290
Query: 325 HKEKV 329
H K+
Sbjct: 291 HLSKI 295
>At3g29380 [K] KOG1597 Transcription initiation factor TFIIB
Length = 336
Score = 124 bits (312), Expect = 2e-28
Identities = 95/327 (29%), Positives = 169/327 (51%), Gaps = 23/327 (7%)
Query: 27 SCPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGE 85
+C +CK P +V S GD +C+ CGLVL I++ EWRTF++DD + D DP+RVG
Sbjct: 5 TCLDCK-RPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGA 63
Query: 86 ASNPLLDGNHLTTRIGQAQGSDARV-TRD----LNRAQSKSIVDKKDNELQAAYAKITMM 140
A+NP L L T I + + + + V ++D L RA ++ + + +++ ++ A+ +I M
Sbjct: 64 ATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQ-VKNHEEDLIKQAFEEIQRM 122
Query: 141 CDAAELPKIVKDCAKE---AYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEIL 197
DA +L ++ A E Y ++ +GK +I A+ + CR ++ R+ KEI
Sbjct: 123 TDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKEIA 182
Query: 198 SLTN-VRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSV 256
+ N V KK+I K +IK +L ++ + + + I TG+ + RFCS L +S
Sbjct: 183 EVANGVDKKDIRKESLVIKRVL--ESHQTSVSASQAIINTGE-----LVRRFCSKLDISQ 235
Query: 257 QVANAAEYIAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTR-ISQTLQVTEGTV 315
+ A + +++ ++ R+P +M + + + N P R I +V E T+
Sbjct: 236 REIMAIPEAVEKAENFDI--RRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTI 293
Query: 316 KGGYKALYEHKEKVV-DPQLIESGVVK 341
K K +Y + K++ + ES ++K
Sbjct: 294 KNSVKDMYPYALKIIPNWYACESDIIK 320
>At4g10680 [K] KOG1597 Transcription initiation factor TFIIB
Length = 182
Score = 78.6 bits (192), Expect = 1e-14
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
C ECK P + V + GD +C CG V+ + I+D G ++
Sbjct: 7 CLECK-RPTETVVNYKNGDTICIECGHVIENNIIDDLD------------------GAST 47
Query: 88 NPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNE-LQAAYAKITMMCDAAEL 146
NP L HL T I + G + + L R Q++ I +K++ + ++ AYA+I M +A L
Sbjct: 48 NPNLKSGHLPTIIFKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEALGL 107
Query: 147 PKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRKKE 206
+ + A + ++ + GKS + A+ + CR+ + ++ KEI ++ NV KE
Sbjct: 108 TFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVANVDMKE 167
Query: 207 IGKTFTII 214
I K ++
Sbjct: 168 INKAVKLL 175
>CE02738 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 759
Score = 59.3 bits (142), Expect = 8e-09
Identities = 58/299 (19%), Positives = 117/299 (38%), Gaps = 49/299 (16%)
Query: 24 IVISCPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRV 83
+V +C C ++ E + GD C CG VL + IV T ++++ R
Sbjct: 1 MVRTCSNCG--SSEIDEDAARGDATCTACGTVLEESIVVTENQFQ------------ERA 46
Query: 84 GEASNPLLDGNHLTTRIGQAQ---GSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMM 140
G + + L+ G +++ A G ++ +R++ A+ + ++D+ ++L +I
Sbjct: 47 GGSGHTLV-GQFVSSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQL-----RINSH 100
Query: 141 CDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLT 200
C + A YK+C + +G+++ S++A + + CR + +T
Sbjct: 101 C---------MNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVT 151
Query: 201 NVRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGL---SVQ 257
+ ++G+ + LR I T +I RF L +
Sbjct: 152 QINVFDLGRNLNYLSRSLR--------------INLPSTDPCLYIMRFACVLDFGDKQKE 197
Query: 258 VANAAEYIAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTEGTVK 316
V N A + + K + GR P +A N S I + + ++EG ++
Sbjct: 198 VVNLATRLVQRMKRDWMSTGRRPTGICGAALLIAARSLNFNRSINDIVRVVHISEGVIR 256
>At3g57370 [K] KOG1597 Transcription initiation factor TFIIB
Length = 360
Score = 58.2 bits (139), Expect = 2e-08
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 18/212 (8%)
Query: 121 SIVDKKDNELQAAYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVI 180
S+ K N+ + I + + +LP +K A E +K+ E +GK + + A+ I
Sbjct: 149 SMASTKPNKA-LSIVSIEAISNGLKLPATIKGQANEIFKVV--ESYARGKERNVLFAACI 205
Query: 181 LVGCRRAEVGRSFKEILSLTNVRK-KEIGKTFTIIKNILREKNDRGFANIDTSNITTGQT 239
+ CR ++ R+ +EI N +I +T I L E N + +I+T+N
Sbjct: 206 YIACRDNDMTRTMREISRFANKASISDISETVGFIAEKL-EINKNWYMSIETAN------ 258
Query: 240 SAETFIPRFCSHLGLSVQVANAAEYIAKHSKDVNVLAGRSPXXXXXXXXY-MATLLFKLN 298
FI RFCS L + AA A S D R+P Y +A L ++ +
Sbjct: 259 ----FIKRFCSIFRLDKEAVEAA-LEAAESYDYMTNGRRAPVSVAAGIVYVIARLSYEKH 313
Query: 299 ISPTRISQTLQVTEGTVKGGYKALYEHKEKVV 330
+ I T V E T+KG Y LY + +V
Sbjct: 314 LLKGLIEAT-GVAENTIKGTYGDLYPNLPTIV 344
>At4g36650 [K] KOG1597 Transcription initiation factor TFIIB
Length = 503
Score = 56.2 bits (134), Expect = 7e-08
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 12/193 (6%)
Query: 133 AYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRS 192
AY +I + L + + A + ++ C L+ +S E++ + ++ R A+ R+
Sbjct: 133 AYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRT 192
Query: 193 FKEILSLTNVRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHL 252
+EI NV++KEIGK I+ L+ S +PRFC+ L
Sbjct: 193 LQEISIAANVQQKEIGKYIKILGEALQLSQ------------PINSNSISVHMPRFCTLL 240
Query: 253 GLSVQVANAAEYIAKHSKDVNVLAGRSPXXXXXXXXYMATLLFKLNISPTRISQTLQVTE 312
L+ A +I + + R+P Y+A L + I + +TE
Sbjct: 241 QLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTE 300
Query: 313 GTVKGGYKALYEH 325
T++ YK L E+
Sbjct: 301 VTLRKVYKELLEN 313
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,108,472
Number of Sequences: 60738
Number of extensions: 743988
Number of successful extensions: 2028
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1982
Number of HSP's gapped (non-prelim): 13
length of query: 357
length of database: 30,389,216
effective HSP length: 107
effective length of query: 250
effective length of database: 23,890,250
effective search space: 5972562500
effective search space used: 5972562500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)