ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3471 suspect: %id Z KOG3121 Cytoskeleton Dynactin, subunit p25
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3471 1182107 1181454 -218
(218 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs14210488 [Z] KOG3121 Dynactin subunit p25 68 1e-11
CE27022 [Z] KOG3121 Dynactin subunit p25 60 2e-09
7298192 [Z] KOG3121 Dynactin subunit p25 60 3e-09
>Hs14210488 [Z] KOG3121 Dynactin subunit p25
Length = 182
Score = 67.8 bits (164), Expect = 1e-11
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Query: 2 DWIETGQGTRISKQANVLGPDKIVLAGQCVISPKCTLEGNVLLMENYDKSASASAKRKNH 61
++IET G ++S+Q+ + G IVL G+ ++ C + G++
Sbjct: 12 EYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLA------------------ 53
Query: 62 NRYTISVGRYCILEPGVRVKPPVVGYRKSEDDLNSGKVAIHSDLLMNSYVWIGQDCKVYC 121
+ VGR+C+++ ++PP + K L + +V+I +DC V
Sbjct: 54 ---NVRVGRHCVVKSRSVIRPPFKKFSKG---------VAFFPLHIGDHVFIEEDCVVNA 101
Query: 122 KKLGSRVVLGANTHLNRCCEIGDVVIIDDNLVVPERYKIPSYSRVSRHPDVATSIVVKPL 181
++GS V +G N + R C + D I DN V+P +P ++ S P + + + +
Sbjct: 102 AQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECT 161
Query: 182 PPMFAPVIENWCQK 195
+ V +++ QK
Sbjct: 162 QELMIDVTKSYYQK 175
>CE27022 [Z] KOG3121 Dynactin subunit p25
Length = 184
Score = 60.5 bits (145), Expect = 2e-09
Identities = 38/169 (22%), Positives = 75/169 (43%), Gaps = 30/169 (17%)
Query: 2 DWIETGQGTRISKQANVLGPDKIVLAGQCVISPKCTLEGNVLLMENYDKSASASAKRKNH 61
+W +T G +++K+ + G I++AG+ +I T+ G++
Sbjct: 12 EWAKTHTGNKVNKKHAIAGTQNILIAGKTIIEEGVTIRGDLA------------------ 53
Query: 62 NRYTISVGRYCILEPGVRVKPPVVGYRKSEDDLNSGKVAIHSDLLMNSYVWIGQDCKVYC 121
T+ +G+YC+L+ ++P + + K N +++ YV+I ++C V
Sbjct: 54 ---TVKIGKYCVLKSRCNIRPCMKIFSKKPTMCN---------VMIGDYVFIEEECVVNA 101
Query: 122 KKLGSRVVLGANTHLNRCCEIGDVVIIDDNLVVPERYKIPSYSRVSRHP 170
++ + V LGA L C I + + + VVP P YS + +P
Sbjct: 102 AQIYAFVHLGARAVLGNGCVIRECSRVLPDTVVPADALFPPYSTIGGNP 150
>7298192 [Z] KOG3121 Dynactin subunit p25
Length = 189
Score = 59.7 bits (143), Expect = 3e-09
Identities = 34/164 (20%), Positives = 68/164 (40%), Gaps = 30/164 (18%)
Query: 2 DWIETGQGTRISKQANVLGPDKIVLAGQCVISPKCTLEGNVLLMENYDKSASASAKRKNH 61
+++ET G ++S+ + G I+L G+ ++ + G++
Sbjct: 12 EYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLA------------------ 53
Query: 62 NRYTISVGRYCILEPGVRVKPPVVGYRKSEDDLNSGKVAIHSDLLMNSYVWIGQDCKVYC 121
+ GRYC++ ++PP + K + + +V++G+ V
Sbjct: 54 ---NVRTGRYCVIGKNSVIRPPYKQFSKG---------IAFFPMHVGEHVFVGEGAVVSA 101
Query: 122 KKLGSRVVLGANTHLNRCCEIGDVVIIDDNLVVPERYKIPSYSR 165
+GS V +G N + R C + D +I+D V+P + SY R
Sbjct: 102 ATIGSYVYIGKNAIIGRRCVLKDCCVIEDGAVLPPETTVSSYMR 145
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,173,996
Number of Sequences: 60738
Number of extensions: 597863
Number of successful extensions: 1141
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 3
length of query: 218
length of database: 30,389,216
effective HSP length: 102
effective length of query: 116
effective length of database: 24,193,940
effective search space: 2806497040
effective search space used: 2806497040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)