ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3480 suspect: LH J KOG4771 Translation, ribosomal structure and biogenesis Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3480 1184767 1184051 -239
(239 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER002w [J] KOG4771 Nucleolar protein (NOP16) involved in 60S ri... 201 6e-52
SPBC1539.10 [J] KOG4771 Nucleolar protein (NOP16) involved in 60... 61 1e-09
>YER002w [J] KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal
subunit biogenesis
Length = 231
Score = 201 bits (512), Expect = 6e-52
Identities = 104/214 (48%), Positives = 138/214 (63%), Gaps = 10/214 (4%)
Query: 25 QKQVNIKGNPIIAENWDYSLTLAQNYKKLGLKVKMGKFAGGEEADLSKVIKKDVYXXXXX 84
Q+++NI+ NPIIA NWDYSLT+AQNYKKLGL+ K+ AGG+EADLSKV+K+
Sbjct: 25 QRKINIQSNPIIAANWDYSLTMAQNYKKLGLRAKLQTPAGGKEADLSKVVKRIPLTKPVL 84
Query: 85 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYDESKIPEGEARIKRDDDGNIVKVYYGKRK 144
E DE++IPEG ARI+RD +G++V+V YGK+K
Sbjct: 85 DEDEDEDEGEDEQNDYNAATV--------ELDENEIPEGGARIQRDKNGDVVRVVYGKKK 136
Query: 145 AIDIDMDVEELRRXXXXXXXXXXXXXXLEAYASRPVAKKERGLSQREDQWLEQLYKKHGD 204
D D DV E++ LE ASRPV +KER S+RE++WLE+LYKKHGD
Sbjct: 137 NFDADEDVNEIK--ARDTTEETEVVKKLEELASRPVIRKERSQSEREEEWLEKLYKKHGD 194
Query: 205 NYKKMFFDKKLNVYQQTENVLRRKILKWKELHNI 238
+YKKMFFDKKLN+YQQ+E L+R++L+WK+ + I
Sbjct: 195 DYKKMFFDKKLNIYQQSEGDLKRRLLRWKKRNGI 228
>SPBC1539.10 [J] KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal
subunit biogenesis
Length = 209
Score = 61.2 bits (147), Expect = 1e-09
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 39/196 (19%)
Query: 27 QVNIKGNPIIAENWDYSLTLAQNYKKLGLKVKMGKFAGGEEADLSKVIKKDVYXXXXXXX 86
+ I GN +I +NWD TL QNY +LGL GG E +++
Sbjct: 27 KAKIYGNFVIQQNWDKHATLRQNYARLGLLATPNYVTGGVEKLYPDPKREN--------- 77
Query: 87 XXXXXXXXXXXXXXXXXXXXXXXXXXGEYDESK--IPEGEARIKRDDDGNIVKVYYGKRK 144
E DE K +P G+A ++RDDDGNI+++ +G+ K
Sbjct: 78 -------------------EDRELTSEELDELKKSLPPGQAIVRRDDDGNIIEIIHGEAK 118
Query: 145 AIDIDMDVEELRRXXXXXXXXXXXXXXLEAYASRPVAK---KERGLSQREDQWLEQLYKK 201
+D +D E LE A + A+ K LS E ++++L K
Sbjct: 119 TLDDVLDKE-----ISIAPAKTEVVRQLEEEAVKKAARQSNKMLPLSAFEHAYIQRLINK 173
Query: 202 HG-DNYKKMFFDKKLN 216
+G ++++ M D KLN
Sbjct: 174 YGTEDFESMAKDVKLN 189
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,474,798
Number of Sequences: 60738
Number of extensions: 351776
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 4
length of query: 239
length of database: 30,389,216
effective HSP length: 103
effective length of query: 136
effective length of database: 24,133,202
effective search space: 3282115472
effective search space used: 3282115472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)