ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3488 normal A KOG4209 RNA processing and modification Splicing factor RNPS1, SR protein superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3488 1185663 1186697 345
(345 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 121 1e-27
At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 94 3e-19
At5g10350 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 93 5e-19
Hs4758876 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 92 1e-18
SPBC16E9.12c [A] KOG4209 Splicing factor RNPS1 SR protein superf... 89 7e-18
At5g51120 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 88 2e-17
7304089 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 87 5e-17
CE08254 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 81 2e-15
CE01885 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 78 2e-14
CE01888 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 78 2e-14
CE17226 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 72 9e-13
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 58 2e-08
YOL041c [R] KOG0118 FOG: RRM domain 52 1e-06
7301511 [R] KOG0118 FOG: RRM domain 51 2e-06
7299788 [R] KOG0118 FOG: RRM domain 51 2e-06
SPAC16E8.06c [R] KOG0118 FOG: RRM domain 51 3e-06
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 51 3e-06
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 51 3e-06
At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein 51 3e-06
Hs14110420 [R] KOG0118 FOG: RRM domain 50 4e-06
Hs14110414 [R] KOG0118 FOG: RRM domain 50 4e-06
At1g74230 [R] KOG0118 FOG: RRM domain 50 4e-06
Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 50 5e-06
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 50 6e-06
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 50 6e-06
YNL016w [R] KOG0118 FOG: RRM domain 49 8e-06
>YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 250
Score = 121 bits (304), Expect = 1e-27
Identities = 69/166 (41%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 89 SRAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAY 148
S+ E+ Q+E DSRSIFVGNI HFKDCG++ R+T+LY++ TG PKGY Y
Sbjct: 50 SKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGY 109
Query: 149 IEFESSDSIPKALELKDSELHGETINVAKKRTNVPG----YNNNKNYYPRKEWVYPGWQG 204
IEFES KAL+L EL G+ I V++KRTN+PG YN+ Y+ + +W YP
Sbjct: 110 IEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYP---- 165
Query: 205 NVMRQWYYPYAAPGYQNYKPNGMXXXXXXQNTFYPQYPYVPRPTHN 250
+ + P P Y Y PN QN Y + Y P +N
Sbjct: 166 --LMAYPNPDTFPYYPPYPPN----QSPNQNFGYNKNNYYRSPYNN 205
>At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 220
Score = 94.0 bits (232), Expect = 3e-19
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 18/151 (11%)
Query: 69 GEQDESNVKTNSGKKDHHHQSRAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGE 128
G QD +++ N K+ E+D+RS+FVGN+ HF+ CG
Sbjct: 72 GAQDPASIAANQAGKE--------------EVDARSVFVGNVDYACTPEEVQQHFQTCGT 117
Query: 129 VVRVTILYNKLTGAPKGYAYIEFESSDSIPKALELKDSELHGETINVAKKRTNVPGYNNN 188
V RVTIL +K G PKG+AY+EF +++ +AL+L +SELHG + V +KRTNVPG
Sbjct: 118 VHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL--- 173
Query: 189 KNYYPRKEWVYPGWQGNVMRQWYYPYAAPGY 219
K + R+ Y G++ Y Y+ GY
Sbjct: 174 KQFRGRRFNPYMGYRFRRPFMSPYMYSPYGY 204
>At5g10350 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 217
Score = 93.2 bits (230), Expect = 5e-19
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 89 SRAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAY 148
S A E + E+D+RS++VGN+ HF+ CG V RVTIL +K G PKG+AY
Sbjct: 75 SMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAY 133
Query: 149 IEFESSDSIPKALELKDSELHGETINVAKKRTNVPGYNNNKNYYP 193
+EF +++ +AL+L +SELHG + V+ KRTNVPG K Y+P
Sbjct: 134 VEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM---KQYHP 175
>Hs4758876 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 306
Score = 91.7 bits (226), Expect = 1e-18
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 94 LEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFES 153
+E+++E D+RSI+VGN+ HF CG V RVTIL +K +G PKG+AYIEF
Sbjct: 163 IEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 154 SDSIPKALELKDSELHGETINVAKKRTNVPGYNNNKNYYPRKEWVYPGWQGNVMRQWYY 212
+S+ +L L +S G I V KRTN PG + +PR + N R +Y
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFY 281
>SPBC16E9.12c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 166
Score = 89.4 bits (220), Expect = 7e-18
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 70 EQDESNVKTNSGKKDHHHQSRAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEV 129
E + K + ++ +++ A R +K+ +D++S++VGN+ HF CG V
Sbjct: 23 EMEAEAAKLRAMQEQLDNETEALRNDKE-SIDAQSVYVGNVDYSVTPEELQSHFASCGSV 81
Query: 130 VRVTILYNKLTGAPKGYAYIEFESSDSIPKALELKDSELHGETINVAKKRTNVPGYNNNK 189
RVTIL +K TG PKG+AYIEF +P AL L S LH + V KRTNVPG + +
Sbjct: 82 NRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGR 141
>At5g51120 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 267
Score = 87.8 bits (216), Expect = 2e-17
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 99 ELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIP 158
E+DSRSI+VGN+ HF+ CG V RVTIL +K G PKG+AY+EF +++
Sbjct: 99 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQ 157
Query: 159 KALELKDSELHGETINVAKKRTNVPG 184
+L L +SELHG I V+ KRTNVPG
Sbjct: 158 NSLILNESELHGRQIKVSAKRTNVPG 183
>7304089 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 224
Score = 86.7 bits (213), Expect = 5e-17
Identities = 41/98 (41%), Positives = 57/98 (57%)
Query: 94 LEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFES 153
LE++ E+D+RS++VGN+ HF CG + RVTIL NK G PKG+AYIEF S
Sbjct: 87 LEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGS 146
Query: 154 SDSIPKALELKDSELHGETINVAKKRTNVPGYNNNKNY 191
+ + AL + ++ G I V KRTN PG + +
Sbjct: 147 KEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRF 184
>CE08254 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 205
Score = 81.3 bits (199), Expect = 2e-15
Identities = 38/90 (42%), Positives = 53/90 (58%)
Query: 95 EKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESS 154
E++ E D++S++VGN+ HF CG V RVTI ++ +G PKG+AY+EF
Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEK 129
Query: 155 DSIPKALELKDSELHGETINVAKKRTNVPG 184
+ + AL + DS L G I V KRTN PG
Sbjct: 130 EGMQNALAMTDSLLRGRQIKVDPKRTNKPG 159
>CE01885 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 197
Score = 78.2 bits (191), Expect = 2e-14
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 95 EKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESS 154
E+Q +D++S+F+GN+ HFK CG +VR TI +K T K +AYIEF+ S
Sbjct: 53 EEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDS 112
Query: 155 DSIPKALELKDSELHGETINVAKKRTNVPG 184
SI AL + S I V KRTN+PG
Sbjct: 113 SSIENALVMNGSLFRSRPIVVTAKRTNIPG 142
>CE01888 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 237
Score = 77.8 bits (190), Expect = 2e-14
Identities = 37/90 (41%), Positives = 52/90 (57%)
Query: 95 EKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESS 154
E+Q +D++S+F+GN+ HFK CG++V+ TI +K T K +AYIEF+ S
Sbjct: 93 EEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDS 152
Query: 155 DSIPKALELKDSELHGETINVAKKRTNVPG 184
SI AL + S I V KRTN+PG
Sbjct: 153 SSIENALVMNGSLFRSRPIVVTAKRTNIPG 182
>CE17226 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 729
Score = 72.4 bits (176), Expect = 9e-13
Identities = 37/94 (39%), Positives = 52/94 (54%)
Query: 91 AERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIE 150
A E+Q + D+RS++VGN+ HF CG+V RVTI +K TG K +A++E
Sbjct: 34 APTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVE 93
Query: 151 FESSDSIPKALELKDSELHGETINVAKKRTNVPG 184
F+ +S+ AL L + I V KRTN PG
Sbjct: 94 FQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPG 127
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 58.2 bits (139), Expect = 2e-08
Identities = 41/187 (21%), Positives = 82/187 (42%), Gaps = 12/187 (6%)
Query: 14 SNGIPNGSEVEAVQKSIKNLSLENLDNT-------EAEKSESEPIPXXXXXXXXXXXXXX 66
S+ + SE E ++ K+ S + D++ E E+++ E
Sbjct: 69 SSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSD 128
Query: 67 XXGEQDESN---VKTNSGKKDHHHQSRAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHF 123
E++ESN K+ +++ +S ++ + + + +IFVG + F
Sbjct: 129 SESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEF 188
Query: 124 KDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKAL-ELKDSELHGETINVAKKRTNV 182
+ G V+ ++Y + T +GY Y++FE+ KA+ E++ E+ G IN T+
Sbjct: 189 EHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPIN-CDMSTSK 247
Query: 183 PGYNNNK 189
P NN++
Sbjct: 248 PAGNNDR 254
>YOL041c [R] KOG0118 FOG: RRM domain
Length = 459
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/90 (32%), Positives = 46/90 (50%), Gaps = 3/90 (3%)
Query: 83 KDHHHQSRAERLEKQIELDS-RSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTG 141
+DHH R + + D RSIFVGN+ HF+ CG++ V I+ + T
Sbjct: 260 QDHH--LRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTN 317
Query: 142 APKGYAYIEFESSDSIPKALELKDSELHGE 171
KG+AY++F+ S+ KAL L + + +
Sbjct: 318 MGKGFAYVQFKDLQSVNKALLLNEKPMKSQ 347
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 90 RAERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYI 149
R ER ++ + + +FVG + +F G VV V +L +K TG +G+A++
Sbjct: 110 RPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFV 169
Query: 150 EFESSDSIPKALELKDSELHGETINVAKKRTNVPGYNNNKNYYPRKEWVYPGWQGNVMR 208
EF+ D++ KA+ K + ++V K N+ +KE PG N ++
Sbjct: 170 EFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNL----------DKKEKQQPGGLANAIK 218
>7299788 [R] KOG0118 FOG: RRM domain
Length = 385
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 103 RSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKALE 162
+ +FVG + +FKD G++V V I+ +K TG +G+A+IEF+ D + K +
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIIL 174
Query: 163 LKDSELHGETINVAK 177
K + +T++V K
Sbjct: 175 QKTHSIKNKTLDVKK 189
>SPAC16E8.06c [R] KOG0118 FOG: RRM domain
Length = 438
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 103 RSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKALE 162
R +FVGN+ +F DCG + V I+ + T KG+AYI+F+ + + KAL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 163 LKDSEL-HGETINVAKKRTNVP 183
L + ++ G T+ + + ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 50.8 bits (120), Expect = 3e-06
Identities = 24/83 (28%), Positives = 42/83 (49%), Gaps = 2/83 (2%)
Query: 101 DSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKA 160
+ + IFVG I HF GEV + + Y++ G +G+A++EF + + A
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Query: 161 LELKDSELHGETINV--AKKRTN 181
L ++ + G+++ V AK R N
Sbjct: 87 LAAREQTIKGKSVEVKPAKSREN 109
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/131 (23%), Positives = 53/131 (39%), Gaps = 21/131 (16%)
Query: 102 SRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKAL 161
++ IFVG + +F G + V ++Y+ T P+G+ +I F+S +S+ L
Sbjct: 114 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 173
Query: 162 ELKDSELHGETINVAK-----------KRTNVPGYNNNKNYYPRKEWVYPGWQGNVMRQW 210
EL+G+ + V + R+ + GY NN P +
Sbjct: 174 HKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRS----------SANS 223
Query: 211 YYPYAAPGYQN 221
Y+ PGY N
Sbjct: 224 YFNSFPPGYNN 234
>At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 674
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 99 ELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIP 158
+ SR+IFV N+ HF GEV++ I+ + TG P G AYIEF ++
Sbjct: 512 DASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAE 571
Query: 159 KALELKDSELHGETINVAK 177
AL L + + + K
Sbjct: 572 NALSLDGTSFMSRILKIVK 590
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 50.4 bits (119), Expect = 4e-06
Identities = 23/107 (21%), Positives = 55/107 (50%), Gaps = 2/107 (1%)
Query: 70 EQDESNVKTNSGKKDHHHQSRAERLEKQI--ELDSRSIFVGNIXXXXXXXXXXXHFKDCG 127
E + + + + ++D H + + R + + + +F+G + +F G
Sbjct: 62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121
Query: 128 EVVRVTILYNKLTGAPKGYAYIEFESSDSIPKALELKDSELHGETIN 174
EVV T+ + +TG +G+ ++ F+ S+S+ K ++ K+ +L+G+ I+
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID 168
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 50.4 bits (119), Expect = 4e-06
Identities = 23/107 (21%), Positives = 55/107 (50%), Gaps = 2/107 (1%)
Query: 70 EQDESNVKTNSGKKDHHHQSRAERLEKQI--ELDSRSIFVGNIXXXXXXXXXXXHFKDCG 127
E + + + + ++D H + + R + + + +F+G + +F G
Sbjct: 62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121
Query: 128 EVVRVTILYNKLTGAPKGYAYIEFESSDSIPKALELKDSELHGETIN 174
EVV T+ + +TG +G+ ++ F+ S+S+ K ++ K+ +L+G+ I+
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID 168
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 50.4 bits (119), Expect = 4e-06
Identities = 25/76 (32%), Positives = 38/76 (49%)
Query: 100 LDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPK 159
+ S IFVG I F GEVV I+ ++ TG +G+A++ F S++
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 160 ALELKDSELHGETINV 175
A++L +LHG I V
Sbjct: 91 AMQLDGQDLHGRRIRV 106
>Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 362
Score = 50.1 bits (118), Expect = 5e-06
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 19/170 (11%)
Query: 93 RLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFE 152
R + ++ ++ IFVG + +F+ G+V ++++K T +G+ ++ FE
Sbjct: 99 RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
Query: 153 SSDSIPKALELKDSELHGETINV--------------AKKRTNVPGYNNNKNYYPRKEWV 198
S D + K E+ E++ + + A+ R+ V Y +
Sbjct: 159 SEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLG 218
Query: 199 YPGWQGNVMRQWYYPYAAPGYQNYKPNGMXXXXXXQNTFYPQYPYVPRPT 248
YPG+Q Y APGY P + T P P +P T
Sbjct: 219 YPGFQATTYASRSYTGLAPGYTYQFPE-----FRVERTPLPSAPVLPELT 263
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 49.7 bits (117), Expect = 6e-06
Identities = 30/144 (20%), Positives = 61/144 (41%), Gaps = 15/144 (10%)
Query: 83 KDHHHQSRA----ERLEKQIELDSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNK 138
K+HH + + ++ + + +FVG + F G V+ T++ +K
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 139 LTGAPKGYAYIEFESSDSIPKALELKDSELHGETINVAKKRTNVP----------GYNNN 188
TG P+G+ ++ +E+ ++ + +HG+ + V + GY+ N
Sbjct: 283 DTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGN 342
Query: 189 KN-YYPRKEWVYPGWQGNVMRQWY 211
N YY + +Y G +M Q+Y
Sbjct: 343 ANPYYAQNMNMYGGMTPAMMAQYY 366
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/74 (36%), Positives = 40/74 (53%), Gaps = 2/74 (2%)
Query: 122 HFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKALELKDSELHGETINVAKKRTN 181
HF CGEV RV + ++ TGA +G+AYI+ S +AL+L SE+ G I+V + R
Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGGGNIHVEESRPR 559
Query: 182 VPGYNNNKNYYPRK 195
+ N P +
Sbjct: 560 DSDEGRSSNRAPAR 573
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 49.3 bits (116), Expect = 8e-06
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 101 DSRSIFVGNIXXXXXXXXXXXHFKDCGEVVRVTILYNKLTGAPKGYAYIEFESSDSIPKA 160
D+ ++FVG++ FKD + ++++ TG+ +GY ++ F S D A
Sbjct: 160 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 219
Query: 161 LE-LKDSELHGE--TINVAKKRTNVPGYNNNKNYYPRKEW 197
++ ++ +L+G IN A KR N NNN NY R+ +
Sbjct: 220 MDSMQGQDLNGRPLRINWAAKRDN----NNNNNYQQRRNY 255
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.308 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,748,647
Number of Sequences: 60738
Number of extensions: 606732
Number of successful extensions: 1770
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 39
length of query: 345
length of database: 30,389,216
effective HSP length: 107
effective length of query: 238
effective length of database: 23,890,250
effective search space: 5685879500
effective search space used: 5685879500
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)