ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV3526   suspect: LH   U     KOG3385  Intracellular trafficking, secretion, and vesicular transport  V-SNARE

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV3526 1200329  1200769 147  
         (147 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YIL004c [U] KOG3385 V-SNARE                                           142   2e-34

>YIL004c [U] KOG3385 V-SNARE
          Length = 142

 Score =  142 bits (358), Expect = 2e-34
 Identities = 77/146 (52%), Positives = 97/146 (65%), Gaps = 5/146 (3%)

Query: 1   MSSNYSGMQGDLTQRDASRTQLFAGTDFSKYKQQQXXXXXXXXXXXXGVDYSQATLSQLE 60
           MSS ++G  G+  QRD  RTQLF   D S                   +DYSQ+TL+ LE
Sbjct: 1   MSSRFAG--GNAYQRDTGRTQLFGPADGSNSLDDNVSSALGSTDK---LDYSQSTLASLE 55

Query: 61  SQSDEQMNTMSEKINALKNLSLRMGDEIRGSNQTLDQLGNVFEQTSNRLKRTFKRMMVMA 120
           SQS+EQM  M ++I ALK+LSL+MGDEIRGSNQT+DQLG+ F  TS +LKRTF  MM MA
Sbjct: 56  SQSEEQMGAMGQRIKALKSLSLKMGDEIRGSNQTIDQLGDTFHNTSVKLKRTFGNMMEMA 115

Query: 121 QNSRIPLKIWFIIFGVLTLLFFYVWI 146
           + S I +K W IIF ++ +LFF+VWI
Sbjct: 116 RRSGISIKTWLIIFFMVGVLFFWVWI 141


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,452,238
Number of Sequences: 60738
Number of extensions: 187126
Number of successful extensions: 774
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 1
length of query: 147
length of database: 30,389,216
effective HSP length: 96
effective length of query: 51
effective length of database: 24,558,368
effective search space: 1252476768
effective search space used: 1252476768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)