ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3565 good O KOG3129 Posttranslational modification, protein turnover, chaperones 26S proteasome regulatory complex, subunit PSMD9
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3565 1211322 1212074 251
(251 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL007c [O] KOG3129 26S proteasome regulatory complex subunit PSMD9 108 5e-24
Hs18543329 [O] KOG3129 26S proteasome regulatory complex subunit... 100 2e-21
7299792 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9 89 8e-18
CE25810 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9 79 8e-15
SPAC2H10.02c [O] KOG3129 26S proteasome regulatory complex subun... 71 2e-12
At5g57950 [O] KOG3129 26S proteasome regulatory complex subunit ... 57 2e-08
>YIL007c [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 220
Score = 108 bits (271), Expect = 5e-24
Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Query: 38 IPTGLTERINELPHLNFSQASQLKKEVEDELTNQFDNLSAHKVDMNTPLTTAEGFPRGDL 97
I LT RI+++ S+ LK ++E +L F L + M++ L T +G+PR D+
Sbjct: 15 IDPSLTSRISQIDSFKLSELMVLKTDIETQLEAYFSVLEQQGIGMDSALVTPDGYPRSDV 74
Query: 98 DLVTIRLIKXXXXXXXXXXXXIIERVEYLLPLEFESLNKQNATVGKMQTLEMGXXXXXXX 157
D++ + +I+ +++R LL F+++N ++ + +
Sbjct: 75 DVLQVTMIRKNVNMLKNDLNHLLQRSHVLLNQHFDNMNVKSNQDARRNNDDQ-------- 126
Query: 158 XXXXXXIAFAKVVDVKLGSPSHDAGLQTDDLIIKFGTVHALNHNNLSNIGKLVQTRIDEE 217
I FA + +V GSPS A ++ DD +I G VHA NH+ L NI +V D
Sbjct: 127 -AIQYTIPFAFISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRP 185
Query: 218 IVLKIKRNNDIVTIQLVP-RSWQGAGLLGCRIIQI 251
+ + + R I+ L P R+W G GLLGCRI ++
Sbjct: 186 LPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220
>Hs18543329 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 223
Score = 100 bits (249), Expect = 2e-21
Identities = 63/199 (31%), Positives = 100/199 (49%), Gaps = 15/199 (7%)
Query: 61 KKEVEDELTNQFDNLSAHK-VDMNTPLTTAEGFPRGDLDLVTIRLIKXXXXXXXXXXXXI 119
K+E+E ++ +D L + K + MN PL EG+PR D+DL +R + +
Sbjct: 30 KEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAV 89
Query: 120 IERVEYLLPLEFESLNKQNATVGKMQTLEMGXXXXXXXXXXXXXI-------AFAKVVDV 172
+++VE E+L++ +A + Q +M AFAKV +
Sbjct: 90 MKQVE-------EALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSI 142
Query: 173 KLGSPSHDAGLQTDDLIIKFGTVHALNHNNLSNIGKLVQTRIDEEIVLKIKRNNDIVTIQ 232
GSP+ AGLQ DD I++FG+V+ N +L NIG +VQ + + + + R + ++
Sbjct: 143 SPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLR 202
Query: 233 LVPRSWQGAGLLGCRIIQI 251
LVP W G GLLGC II +
Sbjct: 203 LVPTRWAGKGLLGCNIIPL 221
>7299792 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 220
Score = 88.6 bits (218), Expect = 8e-18
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 6/195 (3%)
Query: 61 KKEVEDELTNQFDNLSAH-KVDMNTPLTTAEGFPRGDLDLVTIRLIKXXXXXXXXXXXXI 119
KK++E ++ L+A+ V M+ PL AEGFPR D+D+ +RL + +
Sbjct: 18 KKQLEAQINRNGQILAANDNVGMSGPLVDAEGFPRNDIDVYQVRLARQTIICLQNDHKEL 77
Query: 120 IERVEYLL-PLEFESLNKQNATVGKMQTLEMGXXXXXXXXXXXXXIAFAKVVDVKL---G 175
+ +++ LL E V + L++ +V V L
Sbjct: 78 MNQIQTLLNQYHSEIATTDPELVNRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPD 137
Query: 176 SPSHDAGLQTDDLIIKFGTVHALNHN-NLSNIGKLVQTRIDEEIVLKIKRNNDIVTIQLV 234
SP+ AGL D I++FG++++ N +L+ IG+LV+ + + LK+KR + + LV
Sbjct: 138 SPAERAGLCAGDAILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILV 197
Query: 235 PRSWQGAGLLGCRII 249
P++W G GLLGC I+
Sbjct: 198 PKTWSGRGLLGCNIV 212
>CE25810 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 197
Score = 78.6 bits (192), Expect = 8e-15
Identities = 48/201 (23%), Positives = 90/201 (43%), Gaps = 12/201 (5%)
Query: 51 HLNFSQASQLKKEVEDELTNQFDNLSAHKVDMNTPLTTAEGFPRGDLDLVTIRLIKXXXX 110
H + Q + E++ ++ L + M++PL AEG+P +D+ +R +
Sbjct: 4 HSKAKELLQQRDELDGKIKELMLVLETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLI 63
Query: 111 XXXXXXXXIIERVEYLLPLEFESLNKQNATVGKMQTLEMGXXXXXXXXXXXXXIAFAKVV 170
+ E++ + E + ++ Q AT + F K+
Sbjct: 64 CLRNDRAALTEKIVVEMENENKEVSGQTATSEEKPVHRTSNE------------PFVKIS 111
Query: 171 DVKLGSPSHDAGLQTDDLIIKFGTVHALNHNNLSNIGKLVQTRIDEEIVLKIKRNNDIVT 230
V SP+ G + DDLII++G +H N N++ + ++ + D+ I + + R N V
Sbjct: 112 SVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIRENRPVR 171
Query: 231 IQLVPRSWQGAGLLGCRIIQI 251
+++ P+ W G GLLGC I+ I
Sbjct: 172 LEICPKKWSGPGLLGCNIVPI 192
>SPAC2H10.02c [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 213
Score = 70.9 bits (172), Expect = 2e-12
Identities = 51/214 (23%), Positives = 89/214 (40%), Gaps = 24/214 (11%)
Query: 54 FSQASQLKKEVEDELTNQFDNLSAHKVDMNTPLTTAEGFPRGDLDLVTIRLIKXXXXXXX 113
F Q K+E+E+ L L +V M+TPL T +GFPR D+D+ +IR +
Sbjct: 4 FKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLR 63
Query: 114 XXXXXIIERVEYLLPLEFESLNKQNATVGKMQTLEMGX-------------XXXXXXXXX 160
+ ++++ +L F +K++ L
Sbjct: 64 NDHRELEDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANYNMNDIISRSKIL 123
Query: 161 XXXIAFAKVVDVKLGSPSHDAGLQTDDLIIKFGTVHALNHNNLSNIGKLVQTRIDEEIVL 220
F V V + SP+ +AGL D + VH N +LS + + +++ + +
Sbjct: 124 GRVKPFCVVDSVAVESPAQEAGLCIGDEL-----VHVQNVTSLSELPTFISNNVNKTLDV 178
Query: 221 KIKR------NNDIVTIQLVPRSWQGAGLLGCRI 248
+ R + ++V ++L P WQG GLLGC +
Sbjct: 179 LLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHL 212
>At5g57950 [O] KOG3129 26S proteasome regulatory complex subunit PSMD9
Length = 275
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 21/179 (11%)
Query: 86 LTTAEGFPRGDLDLVTIRLIKXXXXXXXXXXXXIIERVEYLL-------PLEFESLNKQ- 137
L +EGFPR D+D+ +R + I E++ + P S K
Sbjct: 72 LIDSEGFPREDIDIPMVRTERRRLAELRSEHGEITEKINVNIQILHSVRPTSRASSTKDS 131
Query: 138 ------------NATVGKMQTLEMGXXXXXXXXXXXXXIAFAKVVDVKLGSPSHDAGLQT 185
N+ MQT I FA V ++ SP+ + GLQ
Sbjct: 132 GPEETSLSGAAVNSLSASMQTSGFSVTSGPMDVDVVTSIPFAMVDEINESSPAAEGGLQL 191
Query: 186 DDLIIKFGTVHALNHNNLSNIGKLVQTRIDEEIVLKIKRNNDIVTIQLVPRSWQGAGLL 244
D ++KFG V N L + Q+ + + +++ R V + + PR WQG G +
Sbjct: 192 GDQVLKFGNVEG-GDNLLQRLAAEAQSNQGQAVSVQVMRQGAKVVLSVTPRIWQGRGAI 249
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,786,661
Number of Sequences: 60738
Number of extensions: 460956
Number of successful extensions: 1277
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 6
length of query: 251
length of database: 30,389,216
effective HSP length: 104
effective length of query: 147
effective length of database: 24,072,464
effective search space: 3538652208
effective search space used: 3538652208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)