ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV3642   suspect: LH   S     KOG2913  Function unknown                                               Predicted membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV3642 1230053  1231132 360  
         (360 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR010w [S] KOG2913 Predicted membrane protein                        424   e-118

>YMR010w [S] KOG2913 Predicted membrane protein
          Length = 405

 Score =  424 bits (1090), Expect = e-118
 Identities = 208/342 (60%), Positives = 256/342 (74%), Gaps = 6/342 (1%)

Query: 23  YFSKIDQFYIPEWLTMQFVANNLISFTPLFSYGTTVLAIHKSQTSLGFSLDICATMLIAS 82
           Y  K+DQFYIPEWLTMQF+ANNLISFTPLFSYGTT+++I K +T+LGFS+DICATMLIAS
Sbjct: 34  YLPKVDQFYIPEWLTMQFIANNLISFTPLFSYGTTIISIEKCKTALGFSIDICATMLIAS 93

Query: 83  ILRVSYYLITPYEITLLRQSIVMILIQLILLKVALNYRPEDAKYENLEPVETLSELLQDV 142
           ILR+SYYLITPYEITLLRQS+VMI IQLILL+ +L YRP++ KY+NL  VE+LS L+ D+
Sbjct: 94  ILRISYYLITPYEITLLRQSLVMIFIQLILLRTSLKYRPDEYKYQNLTDVESLSHLIHDI 153

Query: 143 WEQYFPA-NPFDVYSTDWKPLLKSLSWKNLLGFGYKIVLVCVYKFLKFFDPSFKRFKGFW 201
           W ++F   N     S DWK L+KSLS+ NLL F +KI L   YK LKFFDP+FKR   FW
Sbjct: 154 WFEFFSCINRPKFLSEDWKNLIKSLSFTNLLKFSFKIFLAFFYKILKFFDPNFKRIGAFW 213

Query: 202 QWNDDLMYWKFLLVFGSLQFFITLIISKVFNWESFSQWIGSLIGSLGLFIESLLPLPQIS 261
           QW+DD  +W+FL +F ++Q  +T  IS + NW+S +Q +GS+IGSLGL +ESLLPLPQI+
Sbjct: 214 QWDDDKNFWRFLALFATVQILVTFFISNILNWDSLAQGLGSIIGSLGLLVESLLPLPQIA 273

Query: 262 IFYKLKSVQGFKLIILVSWLCGDILKISYLVFGASNISVIFLCFGLFQMSLDXXXXXXXX 321
           I YKLKSVQGFKLI+LVSWLCGD LKI+YL+FGA NIS +F+ F LFQMSLD        
Sbjct: 274 ILYKLKSVQGFKLILLVSWLCGDTLKITYLIFGAKNISALFVIFALFQMSLDFYIGGQYI 333

Query: 322 XXXXXXPSLRH-----DEENPEIMSSKEELELRDLSSLQKEM 358
                 P LRH     D  +P      E  EL   ++LQK++
Sbjct: 334 YYRYYYPKLRHQHHPNDSNSPSDEDESEMYELDLFNTLQKDV 375


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.327    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,114,399
Number of Sequences: 60738
Number of extensions: 761242
Number of successful extensions: 2419
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2414
Number of HSP's gapped (non-prelim): 1
length of query: 360
length of database: 30,389,216
effective HSP length: 108
effective length of query: 252
effective length of database: 23,829,512
effective search space: 6005037024
effective search space used: 6005037024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)