ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3666 good O KOG0687 Posttranslational modification, protein turnover, chaperones 26S proteasome regulatory complex, subunit RPN7/PSMD6
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3666 1238190 1239413 408
(408 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR108w [O] KOG0687 26S proteasome regulatory complex subunit RP... 548 e-156
SPBC582.07c [O] KOG0687 26S proteasome regulatory complex subuni... 303 3e-82
Hs7661914 [O] KOG0687 26S proteasome regulatory complex subunit ... 262 6e-70
At4g24820 [O] KOG0687 26S proteasome regulatory complex subunit ... 253 3e-67
7300859 [O] KOG0687 26S proteasome regulatory complex subunit RP... 251 1e-66
CE03368 [O] KOG0687 26S proteasome regulatory complex subunit RP... 234 2e-61
ECU10g0190 [O] KOG0687 26S proteasome regulatory complex subunit... 150 3e-36
Hs5713317 [OT] KOG0686 COP9 signalosome subunit CSN1 78 2e-14
7293847 [OT] KOG0686 COP9 signalosome subunit CSN1 73 7e-13
At3g61140 [OT] KOG0686 COP9 signalosome subunit CSN1 71 3e-12
SPBC215.03c [OT] KOG0686 COP9 signalosome subunit CSN1 50 6e-06
>YPR108w [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 429
Score = 548 bits (1411), Expect = e-156
Identities = 279/420 (66%), Positives = 329/420 (77%), Gaps = 18/420 (4%)
Query: 6 EVQYVDPSVNRVPNYEASDHAFVLGQGNLS-HLHEASRDALLKLIREDHMAPYYKHVCEE 64
EV+YVDP+VNRVPNYE S+ AF+L Q +S + + + +L I+E+ MAPYYK++CEE
Sbjct: 10 EVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEE 69
Query: 65 --LPSGA---------------IEWDQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXX 107
+ +G I++DQ Y+ L KNE +IK+L + +
Sbjct: 70 YLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELE 129
Query: 108 KAQSWINLGEYYAKIGDKDNAEETLTKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQ 167
+AQ+WINLGEYYA+IGDKDNAE+TL K+L KA+STGAKID+MLTI RLGFFYNDQ YVK+
Sbjct: 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189
Query: 168 KLEGVNAMIEKGGDWERRNRYKTYKGIHSMAIRDFKTAASLLVESLATFTSTELTSYENI 227
KLE VN+MIEKGGDWERRNRYKTY GIH +A+R+FK AA LLV+SLATFTS ELTSYE+I
Sbjct: 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESI 249
Query: 228 ATYAFVTGLFAFERTDLKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTSEYKSYFPYLL 287
ATYA VTGLF ERTDLK K+IDSP+LL+L++TT ALQ Y S+Y SYFPYLL
Sbjct: 250 ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLL 309
Query: 288 ETYDKVLLPSKYLNQHADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLS 347
ETY VL+P KYLN+HAD+FVREMRR VYAQLLESYKTLS+KSMA AFGVS FLD DL
Sbjct: 310 ETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLG 369
Query: 348 KFIPTKQLNCVIDRVNGIVETNRPDNKNAQYQLLVKQGDGLITKLQKYGAAVKLTGTDRI 407
KFIP KQLNCVIDRVNGIVETNRPDNKNAQY LLVKQGDGL+TKLQKYGAAV+LTG+DR+
Sbjct: 370 KFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRLTGSDRV 429
>SPBC582.07c [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 409
Score = 303 bits (776), Expect = 3e-82
Identities = 159/384 (41%), Positives = 232/384 (60%), Gaps = 2/384 (0%)
Query: 17 VPNYEASDHAFVLGQGNLSHLHEASRDALLKLIREDHMAPYYKHVCEE-LPSGAIEWDQS 75
V + S F L L + + + D L IR+ +AP YK++ E S +I++D +
Sbjct: 20 VSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSASIDFDSN 79
Query: 76 FYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETLTKA 135
F +S++ KNEE++ + D ++ N +YY I D++ + +
Sbjct: 80 FLNSMIKKNEEKLAEF-DKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDET 138
Query: 136 LDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYKGIH 195
++A TG KID++ + RL + Y D V Q LE + +IEKGGDWER+NR K Y+GI+
Sbjct: 139 FERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIY 198
Query: 196 SMAIRDFKTAASLLVESLATFTSTELTSYENIATYAFVTGLFAFERTDLKEKIIDSPDLL 255
M+IR+F AA LL++ ++TF+STEL Y ++ YA ++G + +R D+K KI+DSP++L
Sbjct: 199 LMSIRNFSGAADLLLDCMSTFSSTELLPYYDVVRYAVISGAISLDRVDVKTKIVDSPEVL 258
Query: 256 ALMTTTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQHADYFVREMRRMV 315
A++ ++ Y +Y +F L + L ++L H Y+VREMRR
Sbjct: 259 AVLPQNESMSSLEACINSLYLCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRA 318
Query: 316 YAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRVNGIVETNRPDNKN 375
YAQLLESY+ LSI SMA +FGVS D++D+DL+ FIP +LNCVIDRVNG+V TNRPD KN
Sbjct: 319 YAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKN 378
Query: 376 AQYQLLVKQGDGLITKLQKYGAAV 399
QYQ +VKQGD L+ KLQKY A V
Sbjct: 379 RQYQEVVKQGDVLLNKLQKYQATV 402
>Hs7661914 [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 389
Score = 262 bits (670), Expect = 6e-70
Identities = 138/364 (37%), Positives = 216/364 (58%), Gaps = 12/364 (3%)
Query: 40 ASRDALLKLIREDHMAPYYKHVCEELPSGAIEW--DQSFYDSLVAKNEEEIKKLKDHLTX 97
A RD L+ +R+++MAPYY+ +C+ L +W D + + NE+E+K+L + L
Sbjct: 36 AVRDELMAAVRDNNMAPYYEALCKSL-----DWQIDVDLLNKMKKANEDELKRLDEELED 90
Query: 98 XXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETLTKALDKAVSTGAKIDIMLTITRLGF 157
+ + + EY +IGDK+ A K DK V+ G ++DI+ + R+G
Sbjct: 91 AEKNLGESEIR-DAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGL 149
Query: 158 FYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYKGIHSMAIRDFKTAASLLVESLATFT 217
FY D + + E ++IE+GGDW+RRNR K Y+G++ +AIRDFK AA L +++++TFT
Sbjct: 150 FYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFT 209
Query: 218 STELTSYENIATYAFVTGLFAFERTDLKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTS 277
S EL Y+ TY + A ER DL+EK+I ++L ++ + PA++ Y
Sbjct: 210 SYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVR---QYLFSLYEC 266
Query: 278 EYKSYFPYLLETYDKVLLPSKYLNQHADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGV 337
Y +F L ++ + H Y+VREMR Y+QLLESY++L++ MA AFGV
Sbjct: 267 RYSVFF-QSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGV 325
Query: 338 SEDFLDKDLSKFIPTKQLNCVIDRVNGIVETNRPDNKNAQYQLLVKQGDGLITKLQKYGA 397
+F+D++LS+FI +L+C ID+VN IVETNRPD+KN QYQ +K+GD L+ ++QK
Sbjct: 326 GVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSR 385
Query: 398 AVKL 401
+ +
Sbjct: 386 VINM 389
>At4g24820 [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 406
Score = 253 bits (647), Expect = 3e-67
Identities = 139/403 (34%), Positives = 232/403 (57%), Gaps = 26/403 (6%)
Query: 18 PNYEASDHAFVLGQGNLSHLHEAS-RDALLKLIREDHMAPYYKHVCEELPSGAIEWDQSF 76
P+ ++ F+L ++ + + + +L IR MAP Y+ + + S ++ DQS
Sbjct: 11 PHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETL---IASSVLDLDQSL 67
Query: 77 YDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETLTKAL 136
+S+ A NEEE+KKL + + + ++ + Y+ +I DK+ A E L
Sbjct: 68 LESMRAANEEELKKLDEKIADAEENLGESEVR-EAHLAKALYFIRISDKEKALEQLKLTE 126
Query: 137 DKAVSTGAKIDIMLTITRLGFFYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYKGIHS 196
K V+ G K+D++ +L FFY D V + ++ + E+GGDWER+NR K Y+G++
Sbjct: 127 GKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYC 186
Query: 197 MAIRDFKTAASLLVESLATFTSTELTSYENIATYAFVTGLFAFERTDLKEKIIDSPDLLA 256
M+ R+FK AASL ++S++TFT+ E+ YE Y +T + +R LK+K++D+P++L
Sbjct: 187 MSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILT 246
Query: 257 LMTTTPALQXXXXXXXXXYTSEYKSYFPYLLE--------TYDKVLLP----------SK 298
++ P L Y +YK++F + T + +LL +
Sbjct: 247 VLGKIPFL---SEFLNSLYECQYKAFFSAFGKFITRTRGHTSECMLLGFSGMAVQIKYDR 303
Query: 299 YLNQHADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCV 358
YL H +++RE+R +VY+Q LESYK++++++MA AFGVS DF+D++LS+FI +L+C
Sbjct: 304 YLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCK 363
Query: 359 IDRVNGIVETNRPDNKNAQYQLLVKQGDGLITKLQKYGAAVKL 401
ID+V G++ETNRPD KNA YQ +KQGD L+ ++QK + L
Sbjct: 364 IDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 406
>7300859 [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 389
Score = 251 bits (642), Expect = 1e-66
Identities = 135/393 (34%), Positives = 224/393 (56%), Gaps = 13/393 (3%)
Query: 11 DPSVNRVPNYEASDHAFVLGQGNLSHLHEASRDALLKLIREDHMAPYYKHVCEELPSGAI 70
+ + + PN E + F+L A + LL+ IR ++MAP+Y+H+C EL
Sbjct: 8 EQGLEKNPNLELAQTKFLLTLAEYKQ-DAALKAKLLEAIRTENMAPWYEHICSELG---- 62
Query: 71 EW--DQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNA 128
W D+ + N E+++L D ++ + EY +IGDK A
Sbjct: 63 -WTVDKDLLARMKENNRVEVEQL-DAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAA 120
Query: 129 EETLTKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQKLEGVNAMIEKGGDWERRNRY 188
E K +K VS G ++DI+ + RLG FY D + + ++ +IE+GGDW+RRNR
Sbjct: 121 ETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRRNRL 180
Query: 189 KTYKGIHSMAIRDFKTAASLLVESLATFTSTELTSYENIATYAFVTGLFAFERTDLKEKI 248
K Y+G++S+A+RDFK AA+ +++++TFTS EL Y Y + A R +L++K+
Sbjct: 181 KVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKV 240
Query: 249 IDSPDLLALMTTTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQHADYFV 308
I ++ ++ P ++ Y +Y++++ +L +K L ++ H Y+V
Sbjct: 241 IKGSEIQEVLHGLPDVK---QFLFSLYNCQYENFYVHLAGV-EKQLRLDYLIHPHYRYYV 296
Query: 309 REMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRVNGIVET 368
REMR + Y QLLESY++L+++ MA +FGV+ +++D++L++FI +L+ +DRV GIVET
Sbjct: 297 REMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVET 356
Query: 369 NRPDNKNAQYQLLVKQGDGLITKLQKYGAAVKL 401
NRPDNKN QYQ +KQGD L+ ++QK + +
Sbjct: 357 NRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>CE03368 [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 410
Score = 234 bits (596), Expect = 2e-61
Identities = 131/390 (33%), Positives = 210/390 (53%), Gaps = 8/390 (2%)
Query: 14 VNRVPNYEASDHAFVLGQGNL-SHLHEASRDALLKLIREDHMAPYYKHVCEELPSGAIEW 72
++R P+ E S F+L + S + EA + L + I+E MAP+Y+ VC + I
Sbjct: 23 ISRWPDLELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFK---IVV 79
Query: 73 DQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETL 132
D + ++ A N+++I ++ + + Q + EYY +IGDKDNA +
Sbjct: 80 DATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVR-QGLLRKFEYYCQIGDKDNALKAY 138
Query: 133 TKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYK 192
T +K V G +ID++ + R+G F+ D H + + + ++E+GGDWER+NR ++Y+
Sbjct: 139 TATYEKTVGMGYRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYE 198
Query: 193 GIHSMAIRDFKTAASLLVESLATFTSTELTSYENIATYAFVTGLFAFERTDLKEKIIDSP 252
++ M++RDF AA L +E++ TF S EL +YEN+ Y +T FA +R DL+ K+I
Sbjct: 199 ALYRMSVRDFAGAADLFLEAVPTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCN 258
Query: 253 DLLALMT---TTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQHADYFVR 309
++ +T L Y Y +F L + +YL+ H +Y+ R
Sbjct: 259 EVQEQLTGGGLNGTLIPVREYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSR 318
Query: 310 EMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRVNGIVETN 369
MR Y Q L YKT+ I MA FGVS F+D++L + I T QL C ID VNG++E N
Sbjct: 319 GMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVN 378
Query: 370 RPDNKNAQYQLLVKQGDGLITKLQKYGAAV 399
D+KN Y+ ++K GD L+ ++QK +
Sbjct: 379 HRDSKNHLYKAVIKDGDILLNRIQKLARVI 408
>ECU10g0190 [O] KOG0687 26S proteasome regulatory complex subunit RPN7/PSMD6
Length = 381
Score = 150 bits (379), Expect = 3e-36
Identities = 100/357 (28%), Positives = 178/357 (49%), Gaps = 20/357 (5%)
Query: 41 SRDALLKLIREDHMAPYYKHVCEELPSGAIEWDQSFYDSLV-AKNE--EEIKKLKDHLTX 97
SR+ L +L+ + M Y + E+ G ++ D+ +L+ KNE EE+++L++
Sbjct: 39 SREHLERLLIDKCMYDLYSFLAEK---GVLKLDRGRMKTLLQTKNERIEELERLREKEVD 95
Query: 98 XXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETLTKALDKAVSTGAKIDIMLTITRLGF 157
+ + E+Y + D N E + + + +S K+DI L R+G
Sbjct: 96 NETYGSEIDRR------IAEFYCQTMDIQNGFEWMRRLMRDDMSLSLKMDIFLCKIRMGL 149
Query: 158 FYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYKGIHSMAIRDFKTAASLLVESLATFT 217
++ V++ +E + + E+G DW+RRNRYK YKG+ M R FK A L E L +F
Sbjct: 150 IVGNRKVVEESIEVADDIYERGCDWDRRNRYKVYKGMFKMMRRKFKEAGILFSEILPSFE 209
Query: 218 STELTSYENIATYAFVTGLFAFERTDLKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTS 277
S+E+ SY Y GL FER +++ +I+ D++ + +Q Y
Sbjct: 210 SSEVISYSRAVRYMIFCGLLRFERREIETRILKCSDVIG-SSEKLGVQLATSLFECNYGD 268
Query: 278 EYKSYFPYLLETYDKVLLPSKYLNQHADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGV 337
+ + D V ++ + D F REMR VY Q+LESY+ + +++MA F V
Sbjct: 269 FMNDLYLFCKSLQDDV-----FVGRFVDLFCREMRLRVYGQVLESYRLMLLENMAQTFRV 323
Query: 338 SEDFLDKDLSKFIPTKQLNCVIDRVNGIVETNRPDNKNAQYQLLVKQGDGLITKLQK 394
S +++++DL +FI +L IDR++G+VE + ++ +V G ++ +++K
Sbjct: 324 SVEYVERDLGEFIVEGRLWSKIDRISGVVEVTSREEQDV--SSVVGYGCDVVRRIKK 378
>Hs5713317 [OT] KOG0686 COP9 signalosome subunit CSN1
Length = 500
Score = 78.2 bits (191), Expect = 2e-14
Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 13/281 (4%)
Query: 114 NLGEYYAKIGDKDNAEETLTKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQ---KLE 170
+LG++Y GD NA + ++A D S I++ L + ++ + + +V K E
Sbjct: 176 DLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAE 235
Query: 171 GVNAMIEKGGDWERRN-----RYKTYKGIHSMAIRDFKTAAS-LLVESLATFTSTELTSY 224
+ E+ G+ + + + K G+ +A R +K AA LL+ S EL S
Sbjct: 236 STPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELLSP 295
Query: 225 ENIATYAFVTGLFAFERTDLKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTSEYKSYFP 284
N+A Y + L F+R +L+ +I S + P ++ Y S+Y S
Sbjct: 296 SNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVR---DIIFKFYESKYASCLK 352
Query: 285 YLLETYDKVLLPSKYLNQHADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDK 344
L E D +LL YL H ++R Q Y + + MA AF + L+
Sbjct: 353 MLDEMKDNLLL-DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 411
Query: 345 DLSKFIPTKQLNCVIDRVNGIVETNRPDNKNAQYQLLVKQG 385
+L++ I ++ +D + I+ D ++ ++ + G
Sbjct: 412 ELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMG 452
>7293847 [OT] KOG0686 COP9 signalosome subunit CSN1
Length = 525
Score = 73.2 bits (178), Expect = 7e-13
Identities = 71/323 (21%), Positives = 129/323 (38%), Gaps = 11/323 (3%)
Query: 69 AIEWDQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNA 128
A +D ++ D+ + K +++KL L + + +L ++Y GD NA
Sbjct: 155 AFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIR-RGHDDLADHYLSCGDLTNA 213
Query: 129 EETLTKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQ---KLEGVNAMIE--KGGDWE 183
+ ++A D S +++ L + ++ + + +V K E E K + +
Sbjct: 214 LKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQ 273
Query: 184 RRNRYKTYKGIHSMAIRDFKTAAS-LLVESLATFTSTELTSYENIATYAFVTGLFAFERT 242
R + G+ + + +K AA L + E+ S N+A Y + L F+R
Sbjct: 274 VHTRLECAAGLAELQQKKYKVAAKHFLNANFDHCDFPEMISTSNVAVYGGLCALATFDRQ 333
Query: 243 DLKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQ 302
+LK +I S + P L+ Y S+Y S L E D LL Y+
Sbjct: 334 ELKRLVIASTSFKLFLELEPQLR---DIIFKFYESKYASCLTLLDEIRDN-LLVDMYIAP 389
Query: 303 HADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRV 362
H ++R Q Y + + MA AF S L+ ++ + I Q+ ID
Sbjct: 390 HVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSH 449
Query: 363 NGIVETNRPDNKNAQYQLLVKQG 385
N I+ D +N+ ++ + G
Sbjct: 450 NKILFAKEADQRNSTFERALIMG 472
>At3g61140 [OT] KOG0686 COP9 signalosome subunit CSN1
Length = 440
Score = 70.9 bits (172), Expect = 3e-12
Identities = 69/323 (21%), Positives = 142/323 (43%), Gaps = 23/323 (7%)
Query: 73 DQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETL 132
D ++ +++ + E++ KL++ L+ + + + G++Y G +A +
Sbjct: 104 DLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIR-MGYNDFGDFYYACGMLGDAFKNY 162
Query: 133 TKALDKAVSTGAKIDI----MLTITRLGFFYNDQHYV---KQKLEGVNAMIEKGGDWERR 185
+ D +T I + +L +G F + YV +Q E + M+
Sbjct: 163 IRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNA------- 215
Query: 186 NRYKTYKGIHSMAIRDFKTAASLLVESLATFTST--ELTSYENIATYAFVTGLFAFERTD 243
+ + G+ + ++ +K AA ++ ++ E+ + ++IATY + L +F+R++
Sbjct: 216 -KLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSE 274
Query: 244 LKEKIIDSPDLLALMTTTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQH 303
LK ID+ + + P ++ Y+S Y S YL +LL +L+ H
Sbjct: 275 LKA-FIDNINFRNFLELVPDVRELINDF---YSSRYASCLEYLASLKSNLLLDI-HLHDH 329
Query: 304 ADYFVREMRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRVN 363
D ++R+ Q + ++ + MA AF S L+K+L I Q+ ID N
Sbjct: 330 VDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHN 389
Query: 364 GIVETNRPDNKNAQYQLLVKQGD 386
I+ D +NA +Q +++ G+
Sbjct: 390 KILYARHADQRNATFQKVLQMGN 412
>SPBC215.03c [OT] KOG0686 COP9 signalosome subunit CSN1
Length = 422
Score = 50.1 bits (118), Expect = 6e-06
Identities = 58/306 (18%), Positives = 125/306 (39%), Gaps = 15/306 (4%)
Query: 73 DQSFYDSLVAKNEEEIKKLKDHLTXXXXXXXXXXXKAQSWINLGEYYAKIGDKDNAEETL 132
D + +S+ ++ +++L+ L +A ++L ++A +G D+A +
Sbjct: 77 DVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQ-LDLASFFADVGQFDSALRSY 135
Query: 133 TKALDKAVSTGAKIDIMLTITRLGFFYNDQHYVKQKLEGVNAMIEKGGDWERRNRYKTYK 192
K + + G + L + R+ + + +V G A E + Y
Sbjct: 136 AKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAF--GSRAKSTVSAAMELTSPIYAYC 193
Query: 193 GIHSMAIRDFKTAASLLVESLATFTSTELTSYENIATYAFVTGLFAFERTDLKEKIIDSP 252
G+ + + D++ A + ++ + T TS + + +I+ Y + L ++ L +++ +
Sbjct: 194 GLANFCLGDYEEALAHFLK-VETDTSDGIITKTDISVYISLCALACWDHKRLIQELERNE 252
Query: 253 DLLALMTTTPALQXXXXXXXXXYTSEYKSYFPYLLETYDKVLLPSKYLNQHADYF--VRE 310
+ AL P+L+ +Y L + L Q + F +RE
Sbjct: 253 EFNALSDLDPSLRRCLQAKC---NRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRE 309
Query: 311 MRRMVYAQLLESYKTLSIKSMAGAFGVSEDFLDKDLSKFIPTKQLNCVIDRVNG---IVE 367
+ Y L Y L +A F + E+F++K+L + I K+LN +D + I
Sbjct: 310 RSLLDY---LIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEP 366
Query: 368 TNRPDN 373
++ P+N
Sbjct: 367 SSEPEN 372
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,411,634
Number of Sequences: 60738
Number of extensions: 882028
Number of successful extensions: 2294
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 11
length of query: 408
length of database: 30,389,216
effective HSP length: 109
effective length of query: 299
effective length of database: 23,768,774
effective search space: 7106863426
effective search space used: 7106863426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)