ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3708 good K KOG1521 Transcription RNA polymerase I and III, subunit RPA40/RPC40
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3708 1254027 1253026 -334
(334 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR110c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 553 e-157
SPBC1289.07c [K] KOG1521 RNA polymerase I and III subunit RPA40/... 373 e-103
Hs4759046_1 [K] KOG1521 RNA polymerase I and III subunit RPA40/R... 276 3e-74
7296912 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 273 3e-73
CE21008_2 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 238 9e-63
At1g60620 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 224 1e-58
At1g60850 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 224 2e-58
ECU01g0600 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 179 4e-45
At2g15430 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 122 7e-28
At2g15400 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 122 7e-28
7298103 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 114 3e-25
Hs14702171 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 107 3e-23
SPCC1442.10c [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 97 4e-20
CE05370_1 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 94 2e-19
YIL021w [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 83 6e-16
ECU06g0600 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 70 4e-12
>YPR110c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 335
Score = 553 bits (1425), Expect = e-157
Identities = 268/335 (80%), Positives = 299/335 (89%), Gaps = 1/335 (0%)
Query: 1 MSNIVGVEYNRVTNTSSTDFPGFSSDQDNSWDLEKFKETFDVQIESLDEREVNFDLVHVD 60
MSNIVG+EYNRVTNT+STDFPGFS D +N W++EKFK+ F+V I SLD RE NFDL+++D
Sbjct: 1 MSNIVGIEYNRVTNTTSTDFPGFSKDAENEWNVEKFKKDFEVNISSLDAREANFDLINID 60
Query: 61 TSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSL 120
TSIANAFRRIMISEVPSVA EYVYFFNNTSV+QDEVLAHRIGLVPLKVDPDML+WVD++L
Sbjct: 61 TSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNL 120
Query: 121 PESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFA 180
P+ E+FTDENTIV+SLNVKCTRNPDAPK DPK LY NAH+YARDLKFEPQG+Q FA
Sbjct: 121 PDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFA 180
Query: 181 KCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPIT 240
CPVV ADPDILLAKLRPGQEISL+AHCILGIG DHAKFSPVSTASYRLLP I I QPI
Sbjct: 181 DCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIK 240
Query: 241 GDDAKKFVKCFPKGVADVNE-KGEAYIKDPRKDTVSREVLRHDEFQGKVKLGRVRDHFIF 299
G+ A++F KCFP GV ++E EAY+KD RKDTVSREVLR++EF KVKLGRVR+HFIF
Sbjct: 241 GESARRFQKCFPPGVIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIF 300
Query: 300 NVESSGAMTPEEIFFKSVRILKNKAEYLKNCPISQ 334
NVES+GAMTPEEIFFKSVRILKNKAEYLKNCPI+Q
Sbjct: 301 NVESAGAMTPEEIFFKSVRILKNKAEYLKNCPITQ 335
>SPBC1289.07c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 348
Score = 373 bits (958), Expect = e-103
Identities = 186/330 (56%), Positives = 241/330 (72%), Gaps = 5/330 (1%)
Query: 5 VGVEYNRVTNTSSTDFPGFSSDQDNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIA 64
+ V +RVT+ S DFPG+ D+DN WDL+KFK+ V I SLD+ + F++ +D SIA
Sbjct: 11 ISVLSDRVTDVGSVDFPGYYFDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIA 70
Query: 65 NAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESE 124
NAFRRI+I+E+P++A E+VY NNTS++QDEVL+HRIGLVP+ DPDM W LP E
Sbjct: 71 NAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQE 130
Query: 125 R-FTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCP 183
TD +T+V SLN KC N +A D +DPK LY N+ +Y+ DL ++PQG+Q E+FA P
Sbjct: 131 ATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNP 190
Query: 184 VVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDD 243
+ +PDI++AKLRPGQEI L AH ILGIG DHAKFSPV+TASYRLLP I I PI G+D
Sbjct: 191 IRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGED 250
Query: 244 AKKFVKCFPKGVADVNE----KGEAYIKDPRKDTVSREVLRHDEFQGKVKLGRVRDHFIF 299
A KF KCFPKGV ++ E K +A + D RKDTVSRE LRH EF KV+LGRVRDH++F
Sbjct: 251 AVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLF 310
Query: 300 NVESSGAMTPEEIFFKSVRILKNKAEYLKN 329
+VES+G M P+ +F KS+ +LK+K +K+
Sbjct: 311 SVESTGIMKPDVLFIKSIAVLKSKCLAVKS 340
>Hs4759046_1 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 314
Score = 276 bits (706), Expect = 3e-74
Identities = 135/290 (46%), Positives = 194/290 (66%), Gaps = 6/290 (2%)
Query: 12 VTNTSSTDFPGFSSDQDNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANAFRRIM 71
V N +TDFPG S D++WD ++F++ F V + +DE + FD+V +D +IANAFRRI+
Sbjct: 21 VRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRIL 80
Query: 72 ISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENT 131
++EVP++A E V +NNTS++QDE+LAHR+GL+P+ DP + + + E T+ +T
Sbjct: 81 LAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG---DEEGTEIDT 137
Query: 132 IVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDI 191
+ L V+CTRNP A KD DP LY N +Y R + + P G Q + F + + DI
Sbjct: 138 LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDI 197
Query: 192 LLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCF 251
L+A+LRPGQEI L HC+ GIG DHAKFSPV+TASYRLLP I + +P+ G+ A++ +CF
Sbjct: 198 LIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCF 257
Query: 252 PKGVADVNE---KGEAYIKDPRKDTVSREVLRHDEFQGKVKLGRVRDHFI 298
GV +V E K A + +PR DT SRE+ R+++ + V+L RVRDH+I
Sbjct: 258 SPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYI 307
>7296912 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 333
Score = 273 bits (698), Expect = 3e-73
Identities = 137/300 (45%), Positives = 202/300 (66%), Gaps = 2/300 (0%)
Query: 28 DNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFN 87
D+ + ++ FKE ++I DE + FDL+ V +IANAFRR+M+S+VPS+A E VY +N
Sbjct: 29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 88 NTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAP 147
NTS++QDEVLAHR+GL+PL+ DP + ++ + +E T+++T+ L VKC+R DA
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAY--RTEESTEAGTEQDTLEFELKVKCSRRRDAG 146
Query: 148 KDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAH 207
KD + +Y+N +Y+ LK+ P+GKQ + +++ V DIL+A+LRPG E+ LR
Sbjct: 147 KDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLV 206
Query: 208 CILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVADVNEKGEAYIK 267
+ G+G DHAKFSPV+TA+YRLLP I++ + +TG DA CF GV ++E AY+K
Sbjct: 207 AVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVIGIDENETAYVK 266
Query: 268 DPRKDTVSREVLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYL 327
D R DT SR V R+ + V L R+RDH+IF+VES GA+ P+ IF ++V++LK K L
Sbjct: 267 DARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRAL 326
>CE21008_2 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 362
Score = 238 bits (607), Expect = 9e-63
Identities = 131/333 (39%), Positives = 198/333 (59%), Gaps = 20/333 (6%)
Query: 13 TNTSSTDFPGFSSDQDNSWDLEKFKETFDVQI--ESLDEREVNFDLVHVDTSIANAFRRI 70
T TD+ + D +D+ ++ + V + ES D + FD+ ++ IANA RR+
Sbjct: 25 TYDECTDYVEY--DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRV 82
Query: 71 MISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSL---------- 120
+I+EVP++A E +Y + NTSV+QDEVL HR+GL+PL+VDP + +
Sbjct: 83 LIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDC 142
Query: 121 PESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFA 180
E ++ +NV CT+N +A DPK LY N+ +Y+R ++ P Q QF
Sbjct: 143 DEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFT 202
Query: 181 K--CPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQP 238
+ P + +D DIL+AKLRPGQEI H + GIG DHAKFSPV+TASYRLLP I++
Sbjct: 203 EEAHPRMVSD-DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAE 261
Query: 239 ITGDDAKKFVKCFPKGVADVNEKGE---AYIKDPRKDTVSREVLRHDEFQGKVKLGRVRD 295
I+G+ A++ F +GV + +KG A +KD RKDT SR V RH++ V+LG+ +
Sbjct: 262 ISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQ 321
Query: 296 HFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 328
HFIF+VES+GA+ E+ ++ ++++ K L+
Sbjct: 322 HFIFSVESTGALKSSELVVEACKVMEIKCRSLR 354
>At1g60620 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 385
Score = 224 bits (571), Expect = 1e-58
Identities = 131/327 (40%), Positives = 194/327 (59%), Gaps = 46/327 (14%)
Query: 28 DNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFN 87
DNS LE F E F V + SL E ++ FD++ V IANAFRRI+++E+PS+A E VY N
Sbjct: 69 DNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVAN 128
Query: 88 NTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAP 147
NTSV+QDEVLAHR+GL+P+ DP + + L E+++ ++NTIV L+VKC +
Sbjct: 129 NTSVIQDEVLAHRLGLIPIAADPRLFEY----LSENDQPNEKNTIVFKLHVKCLKG---- 180
Query: 148 KDCEDPKVLYRNAHIYARDLKFEPQGKQV------------------------EQFAKCP 183
DP+ + +LK+ P G ++ +FA+ P
Sbjct: 181 ----DPR-----RKVLTSELKWLPNGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENP 231
Query: 184 VVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDD 243
+ DIL+AKL PGQEI L AH + GIG HAK+SPV+TA YR+LP + + + G
Sbjct: 232 IRPTLKDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKH 291
Query: 244 AKKFVKCFPKGVADVNEKGE----AYIKDPRKDTVSREVLRHD-EFQGKVKLGRVRDHFI 298
A++ VK PK V D+ + G+ A + PR ++ RE +R E++ +V L RV++HFI
Sbjct: 292 AEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFI 351
Query: 299 FNVESSGAMTPEEIFFKSVRILKNKAE 325
F +ES+G+ PE +F ++V+IL++K E
Sbjct: 352 FTIESTGSQPPEVLFNEAVKILEDKCE 378
>At1g60850 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 375
Score = 224 bits (570), Expect = 2e-58
Identities = 128/334 (38%), Positives = 195/334 (58%), Gaps = 22/334 (6%)
Query: 10 NRVTNTSSTDFPGF---SSDQDNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANA 66
N +T+S + G S+++D++ L F + F V + SL + ++ FD++ +D + ANA
Sbjct: 41 NAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANA 100
Query: 67 FRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERF 126
FRRI+I+EVPS+A E V NTSV+ DEVLAHR+GL+P+ DP + + L E ++
Sbjct: 101 FRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEY----LSEHDQA 156
Query: 127 TDENTIVMSLNVKCTRN-PDAPKDCEDPKVLYRNAHIYARD----------LKFEPQGKQ 175
++NTIV L+VKC +N P D K L + + F
Sbjct: 157 NEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDS 216
Query: 176 VEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQI 235
+ +FA P+ D DIL+AKL PGQEI L AH + GIG HAK+SPV TA YR+ P + +
Sbjct: 217 LPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVL 276
Query: 236 TQPITGDDAKKFVKCFPKGVADVNEKGE----AYIKDPRKDTVSREVLRHDEFQGKVKLG 291
+ + A++ V P+ V D+ + G+ A + PRK T+ +E +R D+ V LG
Sbjct: 277 RGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLG 336
Query: 292 RVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAE 325
V++HFIFN+ES+G++ PE +F ++V+IL+ K E
Sbjct: 337 SVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCE 370
>ECU01g0600 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 305
Score = 179 bits (455), Expect = 4e-45
Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 31/303 (10%)
Query: 32 DLEKFKETFD---VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNN 88
+ + F++T D ++I ++ FDL++VD SIANA RRI+ SEVP++A ++ N
Sbjct: 19 EAKSFEQTVDEIEIRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKEN 78
Query: 89 TSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPK 148
SV DE +AHR+GLVPL+VDP+M + E + N++ +L+V RN
Sbjct: 79 ESVFPDEFIAHRLGLVPLEVDPEMFEFA------GEELDERNSLRFTLDV---RN----- 124
Query: 149 DCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHC 208
E VL ++Y+ D+++ P G Q E F V +L+ +L GQ+IS C
Sbjct: 125 --ESEGVL----NVYSDDIRWNPVGSQREIFRD---VKFSSRVLMFRLARGQKISAELVC 175
Query: 209 ILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVADV---NEKGEAY 265
+G HAK+SPV A+YRL+P I+I I +DA K KCF +GV DV + + +AY
Sbjct: 176 TKNVGKVHAKWSPVCPATYRLMPLIEIGD-IFDEDAYKLQKCFSEGVIDVRPSDGRMKAY 234
Query: 266 IKDPRKDTVSREVLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAE 325
+ +PR D++SRE LRH+EF+ K+ +GR D+F+F + ++ + P + K+V +L K+
Sbjct: 235 VSNPRLDSMSREALRHEEFKDKIFIGRRSDYFLFTI-NTVFLDPLYLLEKAVSVLIEKSR 293
Query: 326 YLK 328
L+
Sbjct: 294 ALR 296
>At2g15430 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 319
Score = 122 bits (306), Expect = 7e-28
Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 21/297 (7%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
++I L + F+L D S+ANA RR+MISEVP+VA + V N+SVL DE +AHR+
Sbjct: 12 IKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 71
Query: 102 GLVPLKVDPDMLSWV--DTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRN 159
GL+PL + M D + + + ++ L+ KC + D
Sbjct: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD------- 124
Query: 160 AHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKF 219
+Y+ D P ++ + + I++ KLR GQE+ LRA GIG DHAK+
Sbjct: 125 --LYSADPTVTPVDFTID--SSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 220 SPVSTASYRLLPHIQITQPI--TGDDAKK--FVKCFPKGVADVNE-KGEAYIKDPRKDTV 274
SP +T ++ P I I + + T D +K ++ P V ++ + + DP T
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 275 SREVLRHDEFQGK---VKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 328
EV++ E GK +++ D FIF VES+GA+ ++ ++ +LK K + ++
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVR 297
>At2g15400 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 319
Score = 122 bits (306), Expect = 7e-28
Identities = 88/297 (29%), Positives = 142/297 (47%), Gaps = 21/297 (7%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
V+I L + F+L D S+ANA RR+MISEVP++A V N+SVL DE +A R+
Sbjct: 12 VKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRL 71
Query: 102 GLVPLKVDP--DMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRN 159
L+PL + M D + + ++ L+ KC + D
Sbjct: 72 SLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRD------- 124
Query: 160 AHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKF 219
+Y+ D P + + I++AKLR GQE+ L+A GIG DHAK+
Sbjct: 125 --LYSADPTVTPV--DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180
Query: 220 SPVSTASYRLLPHIQITQ----PITGDDAKKFVKCFPKGVADVNE-KGEAYIKDPRKDTV 274
SP +T +Y P I I + +T ++ ++ P V ++ G+ + DP T
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240
Query: 275 SREVLRHDEFQGK---VKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 328
EV++ E GK +++ D F+F VES+GA+ ++ ++ ILK K + ++
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIR 297
>7298103 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 275
Score = 114 bits (284), Expect = 3e-25
Identities = 83/287 (28%), Positives = 133/287 (45%), Gaps = 34/287 (11%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
VQI L + V F L + S+AN+ RR+ I+E P++A ++V N++VL DE LAHRI
Sbjct: 9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRI 68
Query: 102 GLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAH 161
GL+PL D + T F E ++ +L+VKC+ D K +++
Sbjct: 69 GLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLK----SSN 124
Query: 162 IYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSP 221
+ QG++ ++ + ++ +IL+ KLR GQE+ LRA+ G G +HAK++P
Sbjct: 125 AKVLPVTSRNQGEEDNEYGE-----SNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 222 VSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVADVNEKGEAYIKDPRKDTVSREVLRH 281
+ + P D + + Y K L
Sbjct: 180 TAGVCFEYDP-------------------------DNSMRHTLYPKPDEWPKSEHTELED 214
Query: 282 DEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 328
D+++ + F FNVES+GA+ PE I V++LKNK L+
Sbjct: 215 DQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQ 261
>Hs14702171 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 275
Score = 107 bits (266), Expect = 3e-23
Identities = 87/293 (29%), Positives = 139/293 (46%), Gaps = 47/293 (16%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
V+I L + V F + + D ++AN+ RR+ I+EVP +A ++V N+SVL DE +AHR+
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 102 GLVPLKVDPDMLSWVDTSLP-ESERFTDENTIVMSLNVKCTRNPDAPKDCED-----PKV 155
GL+PL + D++ + S E F E ++ +L+V+C + D P+V
Sbjct: 69 GLIPL-ISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRV 127
Query: 156 LYRNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGAD 215
+ + +R+ +P VEQ DIL+ KLR GQE+ LRA+ G G +
Sbjct: 128 I----PVTSRNRDNDP-NDYVEQ----------DDILIVKLRKGQELRLRAYAKKGFGKE 172
Query: 216 HAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVADVNEKGEAYIKDPRKDTVS 275
HAK++P + ++ P D+A + V K E + K +
Sbjct: 173 HAKWNPTAGVAFEYDP----------DNALRHT---------VYPKPEEWPKSEYSE--- 210
Query: 276 REVLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 328
L DE Q + F +NVES G++ PE I ++ LK K L+
Sbjct: 211 ---LDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQ 260
>SPCC1442.10c [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 297
Score = 96.7 bits (239), Expect = 4e-20
Identities = 85/295 (28%), Positives = 135/295 (44%), Gaps = 51/295 (17%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
+ I ++ + V+F L + ++AN+ RR++++E+P+VA + V NTSV+ DE LAHR+
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 102 GLVPLKV----DPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLY 157
G++PL +P + T + +++ + ++ + LN KCT
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGE-------------- 112
Query: 158 RNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDI---LLAKLRPGQEISLRAHCILGIGA 214
IYARDL + ADP L+ KLR QEISLR GI
Sbjct: 113 GTMEIYARDLVVSSNSSLGHP------ILADPKSRGPLICKLRKEQEISLRCIAKKGIAK 166
Query: 215 DHAKFSPVSTASYRLLP--HIQITQPITGDDAKKFVKCFPKGVADVNEKGEAYIKDPRKD 272
+HAK+SP S ++ P +Q T +DA +PK K + + PR+
Sbjct: 167 EHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAE---WPK------SKNADWEEPPREG 217
Query: 273 TVSREVLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYL 327
FQ + + F +VES G++ P EI + +RIL+ K L
Sbjct: 218 -------EPFNFQEEPR------RFYMDVESVGSIPPNEIMVQGLRILQEKLAVL 259
>CE05370_1 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 303
Score = 94.4 bits (233), Expect = 2e-19
Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 33/290 (11%)
Query: 41 DVQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHR 100
++++ L + F L D S+AN+ RR+ ++EVP++A ++V NTSVL DE +AHR
Sbjct: 8 NIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHR 67
Query: 101 IGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNA 160
+GL+P D + T E F DE +I L +KC E ++ N
Sbjct: 68 MGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHLMPMH-NL 126
Query: 161 HIYARDL---KFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHA 217
R +G ++F +IL+ KLR GQE++L+A+ G G +HA
Sbjct: 127 DTTVRPACGKALRERGSTRDEFHN------REEILIVKLRKGQELNLKAYVKKGFGKEHA 180
Query: 218 KFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVADVNEKGEAYIKDPRKDTVSRE 277
K++P ++ P + I +P +V E + +D+ +E
Sbjct: 181 KWNPTCGVAFEYDPDNALRHTI-----------YP----NVEEWPRSDHSSLPEDSTEKE 225
Query: 278 VLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEYL 327
F+ K + F F++E +GA+ + I + ILK K E L
Sbjct: 226 A----PFEPDNKPNK----FWFSIEGTGALPAQRIVTMGIGILKRKLEEL 267
>YIL021w [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 318
Score = 82.8 bits (203), Expect = 6e-16
Identities = 75/286 (26%), Positives = 129/286 (44%), Gaps = 43/286 (15%)
Query: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
V+I + V+F L +VD ++AN+ RR+MI+E+P++A + V NT+VL DE +AHR+
Sbjct: 8 VKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRL 67
Query: 102 GLVPLK-VDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNA 160
GL+PL+ +D + L + E D+ ++V++L A + E +Y
Sbjct: 68 GLIPLQSMDIEQLEYSRDCFCEDH--CDKCSVVLTL--------QAFGESESTTNVYSKD 117
Query: 161 HIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFS 220
+ +L G + Q + +L+ KLR GQE+ L GI +HAK+
Sbjct: 118 LVIVSNLMGRNIGHPIIQDKE------GNGVLICKLRKGQELKLTCVAKKGIAKEHAKWG 171
Query: 221 PVSTASYRLLPHIQITQP---ITGDDAKKFVKCFPKGVADVNEKGEAYIKDPRKDTVSRE 277
P + + P ++ D AK++ + K Y P +
Sbjct: 172 PAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQ----------SKNCEYEDPPNEG----- 216
Query: 278 VLRHDEFQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNK 323
D F K + D F NVES G++ +++ + + L+ K
Sbjct: 217 ----DPFDYKAQ----ADTFYMNVESVGSIPVDQVVVRGIDTLQKK 254
>ECU06g0600 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 240
Score = 70.1 bits (170), Expect = 4e-12
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 32/186 (17%)
Query: 44 IESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRIGL 103
+E L + F L + ANA RRI+ISEVP++A + V N +VL DEVLAHR+GL
Sbjct: 6 VEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 104 VPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIY 163
+P+ ++ + S F E ++V ++V T + +
Sbjct: 66 IPIYSKRELKYKEECS---CSGFCSECSVVFEIDVVHTDD--------------TLRTVS 108
Query: 164 ARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCI--LGIGADHAKFSP 221
RD+ + + ++ + P ++ KL Q L+A CI G+G HAK+SP
Sbjct: 109 TRDIVCDEED---------VIIKSGP--VITKLARDQ--GLKARCIGRKGVGKTHAKWSP 155
Query: 222 VSTASY 227
VS S+
Sbjct: 156 VSAISF 161
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,751,885
Number of Sequences: 60738
Number of extensions: 908704
Number of successful extensions: 2100
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2050
Number of HSP's gapped (non-prelim): 22
length of query: 334
length of database: 30,389,216
effective HSP length: 107
effective length of query: 227
effective length of database: 23,890,250
effective search space: 5423086750
effective search space used: 5423086750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)