ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3733 check: MH R KOG0110 General function prediction only RNA-binding protein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3733 1262496 1259863 -878
(878 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 964 0.0
SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily) 544 e-154
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 317 7e-86
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 314 3e-85
CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily) 305 3e-82
7294907 [R] KOG0110 RNA-binding protein (RRM superfamily) 289 1e-77
At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily) 213 8e-55
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 74 1e-12
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 73 2e-12
ECU08g0520 [R] KOG0110 RNA-binding protein (RRM superfamily) 73 2e-12
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 70 1e-11
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 70 1e-11
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 69 2e-11
At5g05720 [R] KOG0110 RNA-binding protein (RRM superfamily) 69 2e-11
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 6e-10
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 64 8e-10
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 2e-09
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 62 4e-09
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 62 5e-09
YHR015w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 61 7e-09
At5g64200 [A] KOG4207 Predicted splicing factor SR protein super... 61 9e-09
At5g61030 [R] KOG0118 FOG: RRM domain 59 3e-08
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 59 4e-08
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 58 6e-08
At1g74230 [R] KOG0118 FOG: RRM domain 57 1e-07
YBR212w [R] KOG0118 FOG: RRM domain 57 1e-07
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 57 1e-07
At3g15010 [R] KOG0118 FOG: RRM domain 57 2e-07
Hs9558733 [R] KOG0118 FOG: RRM domain 56 2e-07
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 2e-07
7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 56 3e-07
Hs4502847 [R] KOG0118 FOG: RRM domain 55 5e-07
Hs14719414 [R] KOG0118 FOG: RRM domain 55 5e-07
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 54 8e-07
At5g06210 [R] KOG0118 FOG: RRM domain 54 8e-07
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 54 1e-06
Hs21361783 [R] KOG0118 FOG: RRM domain 54 1e-06
At3g10400 [R] KOG0118 FOG: RRM domain 54 1e-06
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 53 2e-06
At4g20030 [R] KOG0118 FOG: RRM domain 53 2e-06
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 53 2e-06
At2g22100 [R] KOG0118 FOG: RRM domain 53 2e-06
HsM18152777 [R] KOG0118 FOG: RRM domain 52 3e-06
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 52 3e-06
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 52 3e-06
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 52 3e-06
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 4e-06
Hs4759098 [R] KOG0118 FOG: RRM domain 52 4e-06
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 52 4e-06
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 52 4e-06
Hs5730079 [R] KOG0118 FOG: RRM domain 52 5e-06
Hs22059019 [R] KOG0118 FOG: RRM domain 52 5e-06
Hs16905517 [R] KOG0118 FOG: RRM domain 52 5e-06
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 51 7e-06
At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 51 7e-06
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 51 7e-06
SPBC1861.04c [A] KOG0128 RNA-binding protein SART3 (RRM superfam... 51 9e-06
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 51 9e-06
Hs7657383 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 51 9e-06
Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 51 9e-06
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 51 9e-06
Hs22058338 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 51 9e-06
CE27910 [A] KOG4207 Predicted splicing factor SR protein superfa... 51 9e-06
CE01891 [A] KOG4207 Predicted splicing factor SR protein superfa... 51 9e-06
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 964 bits (2493), Expect = 0.0
Identities = 526/901 (58%), Positives = 637/901 (70%), Gaps = 41/901 (4%)
Query: 1 MSRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQS----YLSDVKLMKNRDGESRRFA 56
MSR+IVKGLP+YL +D LR+ KRL QKH V ++DVK++++R+GESRRF
Sbjct: 1 MSRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFG 60
Query: 57 FIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMXXXXXXXXXXXXXXXX 116
FIG+R+EEDAFD V YFNG+F++TSKIEVSMAKSFADPRVPQPM
Sbjct: 61 FIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEE 120
Query: 117 XXXXXXXXXXXXXXXXXXXXGGKKHDIDAEIAKNKQLQEFINTMKPSSQVTSWETVQSSK 176
K +ID EI KNKQLQEF+ TMKPSSQVTSWE V K
Sbjct: 121 KLLQEENRKKKKVDE------NKHSNIDDEIRKNKQLQEFMETMKPSSQVTSWEKVGIDK 174
Query: 177 TQGXXXXXXXXXVGEMSSNPLLSQALALKGNSRDADEDTDMFKLPGNESDDEYVSLNGGS 236
+ + N LL+ ALALK + DE ++ + NESDDEY +LN
Sbjct: 175 SIEDEKLKREEEDSSVQGNSLLAHALALK-EENNKDEAPNL--VIENESDDEYSALNRNR 231
Query: 237 NNANTDEPEPQ-MMSLDTF-DTAGPTSTDD-------------MAKDEAVSDLDWLKNRR 281
+ D E + M+S+ DT DD +A+DE VSDLDW K RR
Sbjct: 232 DEDQEDAGEEEKMISISNLKDTDIGLVNDDANSDEKENEKRRNLAQDEKVSDLDWFKQRR 291
Query: 282 VRIKDGADTPVSKXXXXXXXXXXXXXXXXXXXXXXXXXXKS-----LKKIRETGRLFLRN 336
VRIK+ K K+ ++KI +TGRLFLRN
Sbjct: 292 VRIKESEAETREKSSSYATEQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRN 351
Query: 337 ILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIF 396
ILYT+ E+DFRKLFSP+GELEEVH+A+DTRTGQSKGFAYVLFK++ NA A+VELDKQIF
Sbjct: 352 ILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIF 411
Query: 397 QGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNSLYMNQDAVLSS 456
QGRLLHILP + KKSH+LDEFDLKN+PLKKQ+ELKRKA +++QTFSWNSLYMNQDAVL S
Sbjct: 412 QGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKRKAAASRQTFSWNSLYMNQDAVLGS 471
Query: 457 VADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLTKFAQLKN-SERDD 515
VA KLG++KS+LIDAENSSSAVKQALAEA VIGDVRK+FE++GVDLTKF+QLK+ ++RDD
Sbjct: 472 VAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKYFESKGVDLTKFSQLKSTNQRDD 531
Query: 516 RVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAARAAFSKISYKR 575
+VILVKNFP+GTTREE+ E+FLP+GKL+RLL+PP+GTIAI+QFRD +ARAAF+K+SYKR
Sbjct: 532 KVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKR 591
Query: 576 FKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLPAAXXXX 635
FKDGIIYLE+GP DCFT+ A+ D+L+ + + ++ E K S DL+EA
Sbjct: 592 FKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANK----DVTE 647
Query: 636 XXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTL 695
V GPTVSIFIKNLNFSTT+Q LT++FK F GFVVAQVKTKPDPK GKTL
Sbjct: 648 GSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTL 707
Query: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXX 755
SMGFGF EF+TKEQANAVI+AM+GT++DGHK+QLKLSHRQ
Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQ-ASQSGNTKTKSNKKSGKII 766
Query: 756 XXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGV 815
LPFEATRKDVFELF+SFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL GV
Sbjct: 767 VKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGV 826
Query: 816 HLLGRRLVMEFVEQDPEDVEQQIEKMTRKVKKQVNTTKIANMRN-SGKRKIDLDEDDEND 874
HLLGRRLVM++ E+D D E++I +MT+KV+KQV T ++A +RN G++K+D+D D+EN+
Sbjct: 827 HLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRNGGGRKKLDVD-DEENE 885
Query: 875 G 875
G
Sbjct: 886 G 886
>SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 833
Score = 544 bits (1401), Expect = e-154
Identities = 334/902 (37%), Positives = 476/902 (52%), Gaps = 103/902 (11%)
Query: 1 MSRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGF 60
MSR+I+K +P Y +++L + K L Q + + ++DV + K ++G SRRFAFIGF
Sbjct: 1 MSRIIIKNIPRYYDKEKLSTYL-KSLPQ------LDAEITDVSVAKTKEGVSRRFAFIGF 53
Query: 61 RDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMXXXXXXXXXXXXXXXXXXXX 120
++EEDA + Y N ++V+TS+IEV A +
Sbjct: 54 KNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEE 113
Query: 121 XXXXXXXXXXXXXXXXGGKKHDIDAEIAKNKQLQEFINTMKPSSQVTSWETVQSSKTQGX 180
K+ +D + + +EF+ S SWE + T+
Sbjct: 114 ELRNLEEEKAKKKKDANLKRKFLDT---LDPKAREFLKLSSSISNSRSWENEEVFDTE-- 168
Query: 181 XXXXXXXXVGEMSSNPLLSQALALKGNSRDADEDTDMFKLPGNESD-----------DEY 229
+NP++ D DE D+ +E D D
Sbjct: 169 ------------ITNPVIPA-------DEDDDEYQDLPAAKRHEGDSIKSTEHDSTLDSG 209
Query: 230 VSLNGGSNNANTDEPEPQMMSLDTFDTAGPTSTDDMAKDEAVSDLDWLKNRRVRIKD--- 286
V ++G +++ E + + DTA + TD A +SD +WL+ R RIK+
Sbjct: 210 VVIDGREKSSSELHEEESEQAAEG-DTAKNSGTDAQAP---LSDDEWLRLHRTRIKEKQP 265
Query: 287 --------------GADTPVSKXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKKIRETGRL 332
+ ++++ I ET RL
Sbjct: 266 EEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRL 325
Query: 333 FLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELD 392
FLRN+ Y+ EDD + LF P+G+LE+VH+ +D +T KGFAY+ F +AD+A A++ELD
Sbjct: 326 FLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELD 385
Query: 393 KQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNSLYMNQDA 452
+ FQGRLLH+LPA A+ S LD++ L LPLKKQRELKRK +A TFSWNSLYMN DA
Sbjct: 386 AKPFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKNTAASSTFSWNSLYMNADA 445
Query: 453 VLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLTKFAQLKNSE 512
V++S+A +LG+KK++++D +S SAVKQAL E VI + + FFE GVDL F KN+
Sbjct: 446 VVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQETKNFFEEHGVDLDAF---KNAA 502
Query: 513 RDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAARAAFSKIS 572
R D V+LVKNFPYGT+ EE+ LF PFG+L R+L+PP+GTIAI++F + P R AFSK++
Sbjct: 503 RSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSKLA 562
Query: 573 YKRFKDGIIYLEKGPSDCFT---RDAQGDELVESETDIQKATAKEAKISGADLLEAQSLP 629
Y R K I+YLEK P D FT + + EL + ++ T+++ + L+
Sbjct: 563 YTRIKSSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTEDIESLD----- 617
Query: 630 AAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPK 689
T +I++KNLNFST ++ + FKP G++ A ++ KPDPK
Sbjct: 618 --------------------TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPK 657
Query: 690 QPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXX 749
+PGK LSMGFGF EFK K A A + AM G +LDGHKL++KLSH QG
Sbjct: 658 RPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH-QGVDAAAEVRKQDSS 716
Query: 750 --XXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAEN 807
LPFEAT+KDV L ++GQL+SVRVPKKFD+SARGFAF EF+ +EA N
Sbjct: 717 KPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAAN 776
Query: 808 AMDQLQGVHLLGRRLVMEFVEQ-DPEDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKID 866
AM L+ HLLGR LV+++ +D++ IEKM ++ + I +GKR I+
Sbjct: 777 AMRALKNTHLLGRHLVLQYASNATMDDMQHAIEKMAKEANAEAAAPSI-----TGKRLIE 831
Query: 867 LD 868
D
Sbjct: 832 TD 833
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 317 bits (811), Expect = 7e-86
Identities = 199/559 (35%), Positives = 305/559 (53%), Gaps = 30/559 (5%)
Query: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
+ E+GRLF+RN+ YT+TE+D KLFS YG L E+H +D+ T + KGFA++ F ++A
Sbjct: 398 LAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 386 TAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNS 445
A+ E+D Q+FQGR+LH+LP+ KK D L + KK++E + KANSA + +WN+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSA-SSHNWNT 516
Query: 446 LYMNQDAVLSSVADKLGMKKSELIDAENSSS-AVKQALAEASVIGDVRKFFETRGVDLTK 504
L+M +AV ++A K KS++ D E S AV+ AL E ++ +VR+F GV L
Sbjct: 517 LFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDS 576
Query: 505 FAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAA 564
F+Q +ER VILVKN P GT E+ E F FG L R+LLP GT AI++F + A
Sbjct: 577 FSQAA-AERSKTVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEA 635
Query: 565 RAAFSKISYKRFKDGIIYLEKGPSDCFTRDA-QGDELVESETD-IQKATAKEAKISGADL 622
R AF ++Y +F +YLE P F+ A Q +L ++ ++ ++K A+ + +
Sbjct: 636 RKAFRHLAYSKFHHVPLYLEWAPVGVFSSAAPQKKKLQDTPSEPMEKDPAEPETVPDGET 695
Query: 623 LEAQSLP------AAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNG 676
E ++ ++ ++ P ++FIKNLNF TT ++L E F
Sbjct: 696 PEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGT 755
Query: 677 FVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHR-- 734
+ K + + G LSMGFGF E++ EQA + ++G ++DGHKL++++S R
Sbjct: 756 VKSCSISKKKN--KAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERAT 813
Query: 735 -QGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA-- 791
+PF+A +++ ELFS+FG+LK+VR+PKK +
Sbjct: 814 KPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTH 873
Query: 792 RGFAFVEFLLPKEAENAMDQL-QGVHLLGRRLVMEFVEQDPEDVEQQIEKMTRKVKKQVN 850
RGF FV+FL ++A+ A + L HL GRRLV+E+ D E ++ + RK +
Sbjct: 874 RGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA-----DSEVTLQALRRKTAAHFH 928
Query: 851 TTKIANMRNSGKRKIDLDE 869
KR + LDE
Sbjct: 929 EPP------KKKRSVVLDE 941
Score = 75.5 bits (184), Expect = 3e-13
Identities = 42/98 (42%), Positives = 56/98 (56%), Gaps = 11/98 (11%)
Query: 1 MSRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGF 60
MSR+IVK LP +KE+R R L T L+D L +DG+ R+F FIGF
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGT-----------LTDCSLKFTKDGKFRKFGFIGF 49
Query: 61 RDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQ 98
+ EE+A +FN +F+DTS+I V KSF DP P+
Sbjct: 50 KSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPR 87
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 314 bits (805), Expect = 3e-85
Identities = 189/520 (36%), Positives = 292/520 (55%), Gaps = 19/520 (3%)
Query: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
+ E+GRLF+RN+ YT+TE+D KLFS YG L E+H +D+ T + KGFA++ F ++A
Sbjct: 398 LAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 386 TAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNS 445
A+ E+D Q+FQGR+LH+LP+ KK D L + KK++E + KANSA + +WN+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSA-SSHNWNT 516
Query: 446 LYMNQDAVLSSVADKLGMKKSELIDAENSSS-AVKQALAEASVIGDVRKFFETRGVDLTK 504
L+M +AV ++A K KS++ D E S AV+ AL E ++ +VR+F GV L
Sbjct: 517 LFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDS 576
Query: 505 FAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAA 564
F+Q +ER VILVKN P GT E+ E F FG L R+LLP G AI++F + A
Sbjct: 577 FSQAA-AERSKTVILVKNLPAGTLAAELQETFGHFGSLGRVLLPEGGITAIVEFLEPLEA 635
Query: 565 RAAFSKISYKRFKDGIIYLEKGPSDCFTRDA-QGDELVESETD-IQKATAKEAKISGADL 622
R AF ++Y +F +YLE P F+ A Q +L ++ ++ ++K A+ + +
Sbjct: 636 RKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGET 695
Query: 623 LEAQSLP------AAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNG 676
E ++ ++ ++ P ++FIKNLNF TT ++L E F
Sbjct: 696 PEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGT 755
Query: 677 FVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHR-- 734
+ K + + G LSMGFGF E++ EQA + ++G ++DGHKL++++S R
Sbjct: 756 VKSCSISKKKN--KAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERAT 813
Query: 735 -QGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA-- 791
+PF+A +++ ELFS+FG+LK+VR+PKK +
Sbjct: 814 KPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTH 873
Query: 792 RGFAFVEFLLPKEAENAMDQL-QGVHLLGRRLVMEFVEQD 830
RGF FV+FL ++A+ A + L HL GRRLV+E+ + +
Sbjct: 874 RGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSE 913
Score = 75.5 bits (184), Expect = 3e-13
Identities = 42/98 (42%), Positives = 56/98 (56%), Gaps = 11/98 (11%)
Query: 1 MSRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGF 60
MSR+IVK LP +KE+R R L T L+D L +DG+ R+F FIGF
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGT-----------LTDCSLKFTKDGKFRKFGFIGF 49
Query: 61 RDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQ 98
+ EE+A +FN +F+DTS+I V KSF DP P+
Sbjct: 50 KSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPR 87
>CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 872
Score = 305 bits (780), Expect = 3e-82
Identities = 204/605 (33%), Positives = 308/605 (50%), Gaps = 62/605 (10%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
+KI ETGRLFLRN+ Y EDD + LF YGE+ EV + +D +TG KGFA V F +
Sbjct: 273 EKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEA 332
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKLDE------------------FDLKNLPLK 425
A A+ LD +F+GR++HILP D K++ + +E + K K
Sbjct: 333 AVAAYSALDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDDPDNPLKAEAKKEKKKKSFK 392
Query: 426 KQRELKRKANSAQQTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSA-VKQALAE 484
++++ ++KA++ + SWN+L++ +A+ ++A +L +KKS+L+ ++ SA V+ ALAE
Sbjct: 393 EEKDEQKKASAGKTAHSWNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLALAE 452
Query: 485 ASVIGDVRKFFETRGVDLTKFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQR 544
++ + R FF GV L F++ +R D V+L KN P G EE+ +F FG +
Sbjct: 453 TRLVRETRDFFLENGVKLDAFSK-PAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTK 511
Query: 545 LLLPPSGTIAILQFRDVPA-ARAAFSKISYKRFKDGIIYLEKGPSDCF------------ 591
+L+P G ++ L P A+ AF ++Y RF+ +YLE P D
Sbjct: 512 VLMPTEGGVSALVIMGNPVDAKKAFRALAYSRFRSQPLYLEWAPYDVMGATAPPAEDKTA 571
Query: 592 ---------TRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLP----AAXXXXXXX 638
R+ +E + + Q+ +E K G +++E + P A
Sbjct: 572 EVADKPKLSKREMTYEEKRKERKNRQQGITEEEKDDG-EVIEEEEKPKEVEAEDKKKSSK 630
Query: 639 XXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVV--AQVKTKPDPKQPGKTLS 696
+++G T +F+KNL F TT L F+ G +V AQ+ K +P +P K LS
Sbjct: 631 KQSEKEIESGST--LFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLS 688
Query: 697 MGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQ----GXXXXXXXXXXXXXXXX 752
MGFGF +F T A + M+G +LDGH L+LK+SHR+ G
Sbjct: 689 MGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENADKGALKRKEVKQKEQGECT 748
Query: 753 XXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKK--FDKSARGFAFVEFLLPKEAENAMD 810
LPFEA+ K+V LF +FG +K++R+PKK + RGF FV+F+ EA A D
Sbjct: 749 KLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFD 808
Query: 811 QL-QGVHLLGRRLVMEFVEQDPEDVEQQIEKMTRKV---KKQVNTTKIANMRNSGKRKID 866
L HL GRRLV+E+ + D E VE+ EK K KK V +K + +I
Sbjct: 809 SLVHSTHLYGRRLVLEWAKDD-ETVEELREKTAEKFAGNKKGVKKSKAQTEEFQQQLQIA 867
Query: 867 LDEDD 871
DE D
Sbjct: 868 DDEKD 872
Score = 53.9 bits (128), Expect = 1e-06
Identities = 32/97 (32%), Positives = 47/97 (47%), Gaps = 11/97 (11%)
Query: 2 SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61
+R+IVK LP E +LR EK +SD L ++G+ R FAF+GF
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEK-----------YGQISDASLKYTKEGKFRGFAFVGFL 51
Query: 62 DEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQ 98
DE A + + N TF ++ K+ V + F D P+
Sbjct: 52 DEGSASNALAKSNQTFFNSKKLTVEECRPFGDANKPR 88
>7294907 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 918
Score = 289 bits (740), Expect = 1e-77
Identities = 183/569 (32%), Positives = 294/569 (51%), Gaps = 31/569 (5%)
Query: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
I E+GR+F RN+ YT TE+D RKLF +G + EV++ +D T + KGF V + ++A
Sbjct: 360 ISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHAL 419
Query: 386 TAFVELDKQIFQGRLLHILPA-DAKKSHK--LDEFDLKNLPLKKQRELKRKANSAQQTFS 442
AF LD F GRLLH+LP+ D +K+ K LDE D +L K+++ LK K N AQ+
Sbjct: 420 KAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDEND-ASLSFKEKKALKLKKN-AQKPIG 477
Query: 443 WNSLYMNQDAVLSSVADKLGMKKSELIDAEN--SSSAVKQALAEASVIGDVRKFFETRGV 500
WN+L++ +AV +A + K ++D + SS+AV+ AL E V+ ++++F E GV
Sbjct: 478 WNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGV 537
Query: 501 DLTKFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRD 560
L F + +R + VIL KN P T EI +F FG + R++LPPSG A++++ D
Sbjct: 538 RLDAFDE-PAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLPPSGVTALIEYCD 596
Query: 561 VPAARAAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKATAKEAKISGA 620
AR AF K++Y +FK+ +YLE P FT+ G+ ++ K K
Sbjct: 597 PLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPE----- 651
Query: 621 DLLEAQSLPAAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVA 680
E + A + P ++F++NLNF T + + + F+
Sbjct: 652 ---EKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTV 708
Query: 681 QVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHR-----Q 735
++ + DP+ P + S+G+GF +FK A + ++ T +DG+ ++LK S R
Sbjct: 709 EIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQD 768
Query: 736 GXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKF---DKSAR 792
+PF+A ++V ++F +FG+L+S+R+PKK + + R
Sbjct: 769 NDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHR 828
Query: 793 GFAFVEFLLPKEAENAMDQLQ-GVHLLGRRLVMEF-VEQDPEDVEQQIEKMTRKVKKQVN 850
GF FV+++ EA+ A D L HL GRRLV+E+ D +DVE+ ++ K
Sbjct: 829 GFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSANDDNQDVEELRKRTAAKFDGSQA 888
Query: 851 TTKIANMRNS-----GKRKIDLDEDDEND 874
T R S G + + D+D+E +
Sbjct: 889 ATAAKRSRKSFFDVEGSVQPNQDDDEEEE 917
Score = 63.2 bits (152), Expect = 2e-09
Identities = 81/424 (19%), Positives = 147/424 (34%), Gaps = 89/424 (20%)
Query: 1 MSRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGF 60
MSR+IVK LP ++ ED+LR + Q ++D++L DG+ R+F F+G+
Sbjct: 1 MSRIIVKQLPKHITEDKLRQIF-----------GAQGTITDLQLKYTPDGKFRQFCFVGY 49
Query: 61 RDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMXXXXXXXXXXXXXXXXXXXX 120
EE+A + +F+ T + TS++ V + PQ
Sbjct: 50 STEEEAQSAIRHFDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKERE 109
Query: 121 XXXXXXXXXXXXXXXXGGKKHDIDAEIAKNKQLQEFINTMKPSSQVTSWETVQSSKTQGX 180
K I + + + QEF+ E S+T
Sbjct: 110 AAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFL------------EAHDKSRT--- 154
Query: 181 XXXXXXXXVGEMSSNPLLSQALALKGNSRDADEDTDMFKLPGNESDDEYVSLNGGSNNAN 240
L L + N + +ED + + DD V + G + +
Sbjct: 155 ----------------LWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDEDGS 198
Query: 241 TDEPEPQMMSLDTFDTAGPTSTDDMAKDEAVSDLDWLKNRRVRIKDGADTPVSKXXXXXX 300
DE + + TD +A ++ +SDL+++K+ A K
Sbjct: 199 GDEADEE------------EDTDKLA-EKPISDLEYMKSLMATTSGEATAKKPK------ 239
Query: 301 XXXXXXXXXXXXXXXXXXXXKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVH 360
K+ K E + + N+ Y + K F P L+
Sbjct: 240 -------------------AKADKSNLELFTIKIHNVPYNTKRQEVLKFFKP---LKPYS 277
Query: 361 IAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLK 420
+ + ++ GF YV FK + A ++ +K +G+ + +D + +K+ +
Sbjct: 278 VRLPSKV---HGFCYVGFKTEKDMAKGMLK-NKSFIKGK--QVFFSDFTEKNKVTKASKS 331
Query: 421 NLPL 424
PL
Sbjct: 332 GQPL 335
>At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 772
Score = 213 bits (543), Expect = 8e-55
Identities = 160/496 (32%), Positives = 237/496 (47%), Gaps = 69/496 (13%)
Query: 379 KNADNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLP--LKKQRELKRKANS 436
+N ATA ELD FQGRLLHILPA +++ D NLP K++RE +RKA+
Sbjct: 266 RNLPYTATAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASE 325
Query: 437 AQ-QTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFF 495
A T +WNSL+M D + S G+ KSEL+D E AV+ AL E VI + ++
Sbjct: 326 AGGDTKAWNSLFMRPDTLASFRV--YGVSKSELLDREAEDPAVRLALGETKVIAETKEAL 383
Query: 496 ETRGVDLT---KFAQLKNSE--RDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPS 550
GV++T KFA E R ++LVKN P+ +T +E+A++F FG L +++LPP+
Sbjct: 384 AKAGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPT 443
Query: 551 GTIA---------------ILQFRDVPAARAAFSKISYKRFKDGIIYLEKGPSDCF---- 591
T+A I F + ARAA ++YKR+KD +YLE P +
Sbjct: 444 KTMALVLFFPCVLRQYIGRIAVFLEPAEARAALKGMAYKRYKDAPLYLEWAPGNILEPKN 503
Query: 592 TRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLPAAXXXXXXXXXXXXXVQAGPTV 651
D + E +++ ++ D+ E + + V
Sbjct: 504 LPDTNEERSDIEENGVRRVNLEQQVEIDPDVTETKKV--------------------AYV 543
Query: 652 SIFIKNLNFSTTSQQLTEKFKPF--NGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709
S+ NL+F TT + L + F G +++ K K+ K LS G+GF EF + E
Sbjct: 544 SLNWYNLSFKTTDEGLKKHFTKLVKQGKILSVTIIK--HKKNEKYLSSGYGFVEFDSVET 601
Query: 710 ANAVISAM---------------EGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXX 754
A +V + +GT+LDGH L L+ +
Sbjct: 602 ATSVYRDLQLIGLDGVEWHFLLWQGTVLDGHALILRFCENK-RSDKVGKDSNKDKPCTKL 660
Query: 755 XXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQG 814
+ FEAT++++ +LFS FGQ+KS+R+PKK G+AFVEF+ +EA NA L
Sbjct: 661 HVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALAS 720
Query: 815 VHLLGRRLVMEFVEQD 830
H GR LV+E+ D
Sbjct: 721 THFYGRHLVLEWANDD 736
Score = 55.8 bits (133), Expect = 3e-07
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 45 MKNRDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQP 99
M++ DG+SR+F FIGFR ++A + YFN T++ TS I V +A D P+P
Sbjct: 1 MRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENAPRP 55
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 73.9 bits (180), Expect = 1e-12
Identities = 88/406 (21%), Positives = 167/406 (40%), Gaps = 49/406 (12%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L++ ++ TE + FSP G + + + D T +S G+AYV F+ +A A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 392 DKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKK-QRELKRKANSAQQTFSWNSLYMNQ 450
+ + +G+ + I+ +++ L + + N+ +K + + KA TFS ++
Sbjct: 73 NFDVIKGKPIRIM--WSQRDPSLRKSGVGNVFIKNLDKSIDNKA--LYDTFSAFGNILS- 127
Query: 451 DAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVD-LTKFAQLK 509
V D+ G K + E +A K ++ + RK F R + A+L
Sbjct: 128 ---CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 510 NSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAARAAFS 569
++ + +KNF E + ELF FGK T+++ RD F
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGK----------TLSVKVMRDPNGKSKGFG 234
Query: 570 KISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLP 629
+SY++ +D K + ++ G + QK ++A++
Sbjct: 235 FVSYEKHEDA----NKAVEEMNGKEISGKIIFVGRA--QKKVERQAELK----------- 277
Query: 630 AAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPK 689
+ V+++IKNL+ + ++L ++F PF A+V
Sbjct: 278 -----RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML----- 327
Query: 690 QPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQ 735
+ G+ S GFGF F + E+A ++ M G I+ L + L+ R+
Sbjct: 328 EDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 62.4 bits (150), Expect = 3e-09
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 16/223 (7%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++FIKNL+ S ++ L + F F + +V + S G+ F F+T+E A+
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYAFVHFETQEAAD 152
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFEL 771
I M G +L+ K + + + E + + EL
Sbjct: 153 KAIEKMNGMLLNDRK--VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 772 FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
FS FG+ SV+V + + ++GF FV + ++A A++++ G + G+ + FV +
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII---FVGRAQ 267
Query: 832 EDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKIDLDE--DDE 872
+ VE+Q E + RK +Q+ +I+ + +LD+ DDE
Sbjct: 268 KKVERQAE-LKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDE 308
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 73.2 bits (178), Expect = 2e-12
Identities = 48/186 (25%), Positives = 88/186 (46%), Gaps = 9/186 (4%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IF+ L++S + L ++F+ G + A+V + G S G+G+ +F+ K A
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIY-----ERGTDRSRGYGYVDFENKSYAE 223
Query: 712 AVISAMEGTILDGHKLQLKLSHRQ---GXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDV 768
I M+G +DG + +S + L F A R +
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAI 283
Query: 769 FELFSSFGQLKSVRVPKKFD-KSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFV 827
FELF+ G++ SVR+P + + +GF +V+F ++A+ A+D LQG ++ R + ++F
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
Query: 828 EQDPED 833
P +
Sbjct: 344 SPRPNN 349
>ECU08g0520 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 432
Score = 72.8 bits (177), Expect = 2e-12
Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 43/276 (15%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
+ I+ + ++F+RN+ A E R +F YGE+EEV + +D R G+ AYV F +
Sbjct: 108 RMIKYSRKIFIRNVPAEANEQFVRDVFKEYGEIEEVGL-LDRREGKG---AYVKFSRGEC 163
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSW 443
A A+ +K + + P K + E +Q +
Sbjct: 164 ALEAY--------------------RKVQFIGGVKARMCPWKDRAE-------KRQYEHY 196
Query: 444 NSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLT 503
N+L+ + ++++ + + + +++D + + A E ++ + +KF E+ G+ L
Sbjct: 197 NTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLD 256
Query: 504 KFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPA 563
D +++V+N E+ + ++ + PS +A+L+F
Sbjct: 257 HL----TGSVDRNMLIVRNM-------ELMKCLDLVDDRCKISVAPSKCLALLKFDKEED 305
Query: 564 ARAAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDE 599
AR + K+S KR K+ ++Y E P C ++ G+E
Sbjct: 306 ARRCYRKLSLKRVKEHVVYCEYAPI-CSVPESTGEE 340
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 70.5 bits (171), Expect = 1e-11
Identities = 50/206 (24%), Positives = 93/206 (44%), Gaps = 12/206 (5%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++F+KNL S T+ L + FK F V +V T D K S G+GF +F+ ++ A+
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK------SRGYGFVQFEQEDAAH 166
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFEL 771
A I + TI+ ++ + G L + + + E
Sbjct: 167 AAIQTLNSTIVADKEIYV------GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREK 220
Query: 772 FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
F+ FG++ S+ + K ++ RG+AFV F P++A A + + G + L + ++
Sbjct: 221 FAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKA 280
Query: 832 EDVEQQIEKMTRKVKKQVNTTKIANM 857
E + E+ K ++Q K++N+
Sbjct: 281 EREQLLREQFKEKHEEQKMIAKVSNI 306
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/91 (29%), Positives = 47/91 (50%), Gaps = 1/91 (1%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
K I + ++++N+ TE++ RK FS G + + D + G+SKGF +V F +
Sbjct: 298 KMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEE 356
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKL 414
A A Q+F G+ L++ A K+ K+
Sbjct: 357 AIDAVKTFHGQMFHGKPLYVAIAQKKEDRKM 387
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 70.1 bits (170), Expect = 1e-11
Identities = 49/173 (28%), Positives = 80/173 (45%), Gaps = 12/173 (6%)
Query: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709
T +IF+KNL T + L + F F V +V T K S G+GF +FK K+
Sbjct: 95 TGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGK------SKGYGFVQFKEKKA 148
Query: 710 ANAVI---SAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRK 766
A VI S+++G +L G+++ ++L + + PF+A+
Sbjct: 149 AKKVIKNFSSLDGLLLGGNRIVVELYNPE---IKKGESKKTSATFTNCFIKNFPFDASEA 205
Query: 767 DVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLG 819
++ EL +G++ S+ P K + +GFAF F + A NA+ L G G
Sbjct: 206 ELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFG 258
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 69.3 bits (168), Expect = 2e-11
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IFIKNL S ++ L + F F + +V S GFGF F+T E A
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-------SRGFGFVHFETHEAAQ 152
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFEL 771
I+ M G +L+ K+ + H + LP + + + +L
Sbjct: 153 QAINTMNGMLLNDRKVFV--GHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 772 FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
FS FG++ SV+V + +R F FV F +EA+ A+ + G + GR L + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL---YAGRAQ 267
Query: 832 EDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKIDLDEDDENDGLQ 877
+ VE+Q E R +Q+ ++ + +LD+ ++D L+
Sbjct: 268 KRVERQNELKRR--FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
>At5g05720 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 433
Score = 69.3 bits (168), Expect = 2e-11
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 12/89 (13%)
Query: 1 MSRVIVKGLPI-YLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIG 59
MS +IVK LP ++ E+RLRD+ ++ ++DVKL + DG+SR+FA+IG
Sbjct: 1 MSWIIVKNLPSKHVTEERLRDVFSRK-----------GEIADVKLKRKSDGKSRQFAYIG 49
Query: 60 FRDEEDAFDCVNYFNGTFVDTSKIEVSMA 88
FR E++A D + Y N F+DT +I V +A
Sbjct: 50 FRTEQEAQDAITYVNKCFIDTYRISVEVA 78
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 64.7 bits (156), Expect = 6e-10
Identities = 86/419 (20%), Positives = 160/419 (37%), Gaps = 75/419 (17%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L++ ++ + T+ F G + V + D T +S G+ YV F N +AA A EL
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 392 DKQIFQGRLLHILPADAKKSHK---LDEFDLKNLPLKKQRELKRKANSAQQTFSWNSLYM 448
+ G+ + ++ + S + +KNL + KA TFS +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNL----DESIDHKA--LHDTFSSFGNIV 151
Query: 449 NQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLTKFAQL 508
+ + S G + + E++ A+++ ++ D + V + F L
Sbjct: 152 SCKVAVDSSGQSKGYGFVQYANEESAQKAIEK--LNGMLLND-------KQVYVGPF--L 200
Query: 509 KNSERDDRV-------ILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGT-----IAIL 556
+ ERD + VKN TT +++ F +GK+ ++ G +
Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 260
Query: 557 QFRDVPAARAAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKATAKEAK 616
F + A A ++ +F D Y+ + + E ET+++ + K
Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYV-----------GRAQKKSERETELRVRYEQNLK 309
Query: 617 ISGADLLEAQSLPAAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNG 676
AD ++ +L ++KNL+ S + ++L E F PF
Sbjct: 310 -EAADKFQSSNL-------------------------YVKNLDPSISDEKLKEIFSPFG- 342
Query: 677 FVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQ 735
V K DP K G GF F T E+A +S + G +++ L + ++ R+
Sbjct: 343 -TVTSSKVMRDPNGTSK----GSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 54.7 bits (130), Expect = 6e-07
Identities = 51/233 (21%), Positives = 94/233 (39%), Gaps = 16/233 (6%)
Query: 630 AAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPK 689
AA Q G T S+++ +L+F+ T QL + F V +V +
Sbjct: 16 AAVTSAPATSGGATATQFGNT-SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTR 74
Query: 690 QPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXX 749
+ S+G+G+ F + A I + L G +++ SHR
Sbjct: 75 R-----SLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIK 129
Query: 750 XXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAM 809
L K + + FSSFG + S +V ++G+ FV++ + A+ A+
Sbjct: 130 N--------LDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181
Query: 810 DQLQGVHLLGRRL-VMEFVEQDPEDVEQQIEKMTR-KVKKQVNTTKIANMRNS 860
++L G+ L +++ V F+ + D K T VK +T +++N+
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 48/197 (24%), Positives = 89/197 (44%), Gaps = 9/197 (4%)
Query: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709
T ++FIKNL+ + ++ L + F F + +V + G + G+GF F + E
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD----ELGN--AKGYGFVHFDSVES 220
Query: 710 ANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVF 769
ANA I + G +L+ K+ + H L E T ++
Sbjct: 221 ANAAIEHVNGMLLNDKKVYV--GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 770 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQ 829
+LF FG++ S+ + K + RGF FV + + A+ A+D+L G++L + ++
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Query: 830 DPEDVEQQIEKMTRKVK 846
E E+++ K ++K
Sbjct: 339 KHER-EEELRKRYEQMK 354
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 63.2 bits (152), Expect = 2e-09
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++++KNL+ S TS L F PF + +V ++ G+ S GFGF +F T++ A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVV-----EENGQ--SKGFGFVQFDTEQSAV 165
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFEL 771
+ SA+ G+++ G KL + + + T + L
Sbjct: 166 SARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETV----TDDCLHTL 221
Query: 772 FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL 822
FS +G + SV V + +RGF FV F P+ A+ AM+ L G+ L ++L
Sbjct: 222 FSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 62.0 bits (149), Expect = 4e-09
Identities = 55/228 (24%), Positives = 96/228 (41%), Gaps = 25/228 (10%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IFIKNL+ ++ L + F F + +++ T + K S GFGF F+ + A
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK------SKGFGFVHFEEEGAAK 180
Query: 712 AVISAMEGTILDGHKLQLK--LSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVF 769
I A+ G +L+G ++ + LS ++ + E T +
Sbjct: 181 EAIDALNGMLLNGQEIYVAPHLSRKE----RDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 770 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQ 829
ELF+ FG + S + K D +GF FV + ++A A++ L L G +L + ++
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 830 DPEDVEQQIEKMTRKVKKQVNTTKIANMR-----NSGKRKIDLDEDDE 872
E + +KKQ ++ M N + +D DDE
Sbjct: 297 KNERM--------HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 61.6 bits (148), Expect = 5e-09
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
RL++ ++ + TED R +F P+G+++ + + +DT TG+SKG+ ++ + NAD+A A +
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 391 LDKQIFQGRLLHI 403
L+ GRL+ +
Sbjct: 396 LNGFELAGRLMKV 408
>YHR015w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 659
Score = 61.2 bits (147), Expect = 7e-09
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 36/253 (14%)
Query: 321 KSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKN 380
K + K +T LF+ N+ T TE+ RK+F Y E + D T +S G+ Y+ FK+
Sbjct: 102 KYITKTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKD 161
Query: 381 ADNAATAFVELDKQIFQGRLLHILPADA----KKSHKLDEFDLKNLPLKKQRELKRKANS 436
++A +A E + +F G+ + I+P+ +K+ + F NLPL+ N
Sbjct: 162 KNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVF-FSNLPLE---------NP 211
Query: 437 AQQTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGD------ 490
T S+ + + VLS + ++ D + S+ V + G+
Sbjct: 212 QLTTRSFYLIMIEYGNVLSCLLERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGL 271
Query: 491 -------VRKFFETR----GVDLTKFAQL--KNSERDD---RVILVKNFPYGTTREEIAE 534
R F R G D+ +L N+ D+ + ILVKN P TT+EE+ +
Sbjct: 272 HFDKEVRTRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLD 331
Query: 535 LFLPFGKLQRLLL 547
F G ++ + +
Sbjct: 332 YFSTIGPIKSVFI 344
>At5g64200 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 303
Score = 60.8 bits (146), Expect = 9e-09
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
I +T L + NI + T DD LF+ YG++ +V I D RTG S+GFA+V +K D A
Sbjct: 12 ISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAH 71
Query: 386 TAFVELDKQIFQGRLLHILPAD-AKKSHKLDEFDLKNLPLKKQRELKR 432
A LD ++ GR + + A + K+ + + P K +R R
Sbjct: 72 KAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSR 119
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 58.9 bits (141), Expect = 3e-08
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 329 TGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAF 388
+ +LF+ + Y+ ED R+ F+ YGE+ + + +D TG+S+GF +V F +++ A++A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 389 VELDKQIFQGRLLHILPADAKKS 411
LD + GR++ + A+ + S
Sbjct: 99 QALDGRDLHGRVVKVNYANDRTS 121
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 58.5 bits (140), Expect = 4e-08
Identities = 57/223 (25%), Positives = 97/223 (42%), Gaps = 19/223 (8%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IFIKNL+ S ++ L + F F + +V + S G+GF F+T+E A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAE 152
Query: 712 AVISAMEGTILDGHKLQL-KLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFE 770
I M G +L+ K+ + + R+ + KD+
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL-- 210
Query: 771 LFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQD 830
FG SV+V ++GF FV F ++A+ A+D++ G L G+++ +V +
Sbjct: 211 ----FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI---YVGRA 263
Query: 831 PEDVEQQIE-KMTRKVKKQVNTTKIANMRNSGKRKIDLDEDDE 872
+ VE+Q E K + KQ T+ + N + +D DDE
Sbjct: 264 QKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 305
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 58.2 bits (139), Expect = 6e-08
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 11/221 (4%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IFIKNL+ S ++ L E F F + +V + S G+GF +F+ +E A
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR------SKGYGFVQFEKEESAQ 190
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFEL 771
A I + G +++ Q+ + H LP E ++ +
Sbjct: 191 AAIDKLNGMLMNDK--QVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKT 248
Query: 772 FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
F FG + S V + ++R F FV F + A +A++++ G+ L L +V +
Sbjct: 249 FGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL---YVGRAQ 305
Query: 832 EDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKIDLDEDDE 872
+ E++ E + ++++N + + N + +D DDE
Sbjct: 306 KKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 3/83 (3%)
Query: 323 LKKIR--ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKN 380
L+ IR + ++F+ I Y+ E R+ FS YGE+ + I VD TG+S+GFA+V F +
Sbjct: 25 LQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTS 84
Query: 381 ADNAATAFVELDKQIFQGRLLHI 403
+ A+ A ++LD Q GR + +
Sbjct: 85 TEEASNA-MQLDGQDLHGRRIRV 106
>YBR212w [R] KOG0118 FOG: RRM domain
Length = 672
Score = 57.0 bits (136), Expect = 1e-07
Identities = 50/228 (21%), Positives = 93/228 (39%), Gaps = 20/228 (8%)
Query: 332 LFLRNILYTATEDDFRKLFSP-YGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
LF+ ++ TATE D LF + ++ V + D TG S+ F +V F + D A +E
Sbjct: 194 LFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIE 253
Query: 391 LDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNSLYMNQ 450
+ + FQGR L + A + + L L++Q++ +++ Q N
Sbjct: 254 MSGKWFQGRALRVAYATPRNNMMLQ--------LQEQQQQQQQLQQQHQQLDQED---NN 302
Query: 451 DAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLTKFAQLKN 510
+L A+ L S ++ +A L E + V+ + + N
Sbjct: 303 GPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGI--------SNMRVNDSLPSNTYN 354
Query: 511 SERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQF 558
++ + + V TT ++ LF PFG + + +P ++F
Sbjct: 355 TDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKF 402
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 57.0 bits (136), Expect = 1e-07
Identities = 47/182 (25%), Positives = 72/182 (38%), Gaps = 12/182 (6%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++F++NL F T LT F A V T P+ + + G+GF F E A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGE-----NRGYGFVTFSMLEDAQ 60
Query: 712 AVISAMEGTILDGHKLQL------KLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATR 765
++ L G L+L K S LP+ +
Sbjct: 61 RAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKK 120
Query: 766 KDVFEL-FSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVM 824
E FS FG+++ +++P K GFAFV K AE AM+ L G + GR + +
Sbjct: 121 PQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 825 EF 826
++
Sbjct: 181 DW 182
Score = 52.4 bits (124), Expect = 3e-06
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ + +DD FS G ++ + + TG+++G+ +V F ++A A EL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 392 DKQIFQGRLLHILPADAKKSHKLD 415
+ GR+L + A +K ++D
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVD 90
>At3g15010 [R] KOG0118 FOG: RRM domain
Length = 404
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/65 (41%), Positives = 39/65 (59%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
+LF+R + T + R LFS YG+LEE + +D TG+SKG+ +V F + D A A E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 391 LDKQI 395
K+I
Sbjct: 136 PSKKI 140
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 56.2 bits (134), Expect = 2e-07
Identities = 29/75 (38%), Positives = 45/75 (59%), Gaps = 1/75 (1%)
Query: 338 LYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQ 397
LYT TE D R++FS YG L V++ D RTG+S+GFA+V F+ D++ A +
Sbjct: 128 LYT-TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD 186
Query: 398 GRLLHILPADAKKSH 412
GR + + + K++H
Sbjct: 187 GRRIRVDYSITKRAH 201
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++FIKNL+ S ++ L E F F + ++V + S G+ F F+ + A+
Sbjct: 216 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-------SKGYAFVHFQNQSAAD 268
Query: 712 AVISAMEGTILDGHKLQL-KLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKDVFE 770
I M G +L G K+ + + +R+ + KDVF
Sbjct: 269 RAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF- 327
Query: 771 LFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQD 830
S +G+ SV+V ++GF FV F + A+ A++++ G + G+ + FV +
Sbjct: 328 --SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI---FVGRA 382
Query: 831 PEDVEQQIE--KMTRKVKKQ 848
+ VE+Q E +M ++K++
Sbjct: 383 QKKVERQAELKQMFEQLKRE 402
>7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1045
Score = 55.8 bits (133), Expect = 3e-07
Identities = 87/425 (20%), Positives = 163/425 (37%), Gaps = 56/425 (13%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
++ ++ RL +RNI Y +TED R+ F +G LE+VHI + G+ G A+V ++ +
Sbjct: 270 RRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQ 328
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSW 443
A A + + + GR + + A K DE+ KN ++ E K K ++
Sbjct: 329 ATKAILNSNGKELLGRKVFVDWALGK-----DEYVSKNPKDEEPDEKKPKVEVKEENGDE 383
Query: 444 NSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAE--------ASVIGDVRKFF 495
+ DA + + G E DAE+ +E +++
Sbjct: 384 KEVKEESDAEVGKEDESSG----EDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKL 439
Query: 496 ETRGVDLTKFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLL------PP 549
+ + V K Q+ N ++ + +KN P+ ++ + FG + ++
Sbjct: 440 DIKNVKREK--QISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGH 497
Query: 550 SGTIAILQFRDVPAARAAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQK 609
S A ++F+ +A + + D ++ P +R+ + +
Sbjct: 498 SKGTAFVKFKAKESADLCLQAGTEFKLMDEVL----DPHPALSREEMKSKQSQENKKDDA 553
Query: 610 ATAKEAKISGADLLEAQSLPAAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLT- 668
++ ++ L+ A + A Q V +KNLN + +L+
Sbjct: 554 KDSRNLYLAREGLIMAGAKAADGVSASDMAKRHELEQVKTQV---LKNLNRFVSRNRLSI 610
Query: 669 ---------EK----------FKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709
EK F+P V+ + K P+ Q GK S GFGF F T ++
Sbjct: 611 HNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQ-GK--SKGFGFLSFDTHQR 667
Query: 710 ANAVI 714
A A +
Sbjct: 668 ALAAL 672
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 55.1 bits (131), Expect = 5e-07
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387
+ G+LF+ + + E ++FS YG++ EV + D T +S+GF +V F+N D+A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 388 FVELDKQIFQGRLLHI 403
+ ++ + GR + +
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>Hs14719414 [R] KOG0118 FOG: RRM domain
Length = 283
Score = 55.1 bits (131), Expect = 5e-07
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
R+F+ I + E D RK FS YG ++EV I V+ R G SKG+ +V F+ ++A E
Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFVTFETQEDAQKILQE 92
Query: 391 LDKQIFQGRLLHILPADAKK 410
+K ++ + L+I PA K+
Sbjct: 93 AEKLNYKDKKLNIGPAIRKQ 112
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 54.3 bits (129), Expect = 8e-07
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
RL++ ++ + TED R +F P+G +E + + +D+ TG+SKG+ ++ F +++ A A +
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 391 LDKQIFQGRLL---HILP-ADAKKSHKL---DEFDLKNLPLKKQRELKRKANSAQQT--- 440
L+ GR + H+ DA + DE + + L L+ A A+ T
Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQ 370
Query: 441 ---FSWNSLYMNQDAVLSSVAD 459
+ +L M+ +VAD
Sbjct: 371 IPPAAQQALQMSGSLAFGAVAD 392
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 54.3 bits (129), Expect = 8e-07
Identities = 28/81 (34%), Positives = 45/81 (54%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
+LF+ + + TE + FS G++ E I +D + +SKGF +V F +AD A A +E
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 391 LDKQIFQGRLLHILPADAKKS 411
+ Q GR + + A AK+S
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 53.9 bits (128), Expect = 1e-06
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 15/227 (6%)
Query: 625 AQSLPAAXXXXXXXXXXXXXVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKT 684
A + AA Q G T S+++ +L+ + T QL E F V +V
Sbjct: 20 AAAAEAAAAAAGAAAAAAGAAQQG-TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCR 78
Query: 685 KPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXX 744
++ S+G+G+ + T + A+ ++ + L+G +++ S R
Sbjct: 79 DMTTRR-----SLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVG 133
Query: 745 XXXXXXXXXXXXXXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKE 804
L K + E FS+FG + S +V ++G+ FV++ +
Sbjct: 134 NIFIKN--------LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEA 185
Query: 805 AENAMDQLQGVHLLGRRL-VMEFVEQDPEDVEQQIEKMTRKVKKQVN 850
A+ A+D+L G+ L +++ V FV + D + K T K ++
Sbjct: 186 AQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLS 232
Score = 52.4 bits (124), Expect = 3e-06
Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 33/235 (14%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
+IFIKNL+ S + L E F F + +V P + S G+GF ++ T E A
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQ------SKGYGFVQYDTDEAAQ 187
Query: 712 AVISAMEGTILDG---------HKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFE 762
I + G +L+ HKLQ S + L
Sbjct: 188 GAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK-------------VKFTNVYVKNLSES 234
Query: 763 ATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL 822
+ +++ ++F FG S + + + ++GF FV F +A A+D L G +
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEW 294
Query: 823 VMEFVEQDPEDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKIDLDEDDENDGLQ 877
+ ++ E + +K + +K+ + ++ +N+ +LDE +D L+
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK-----NLDESVTDDKLR 344
Score = 51.6 bits (122), Expect = 5e-06
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 36/245 (14%)
Query: 330 GRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFV 389
G +F++N+ + + FS +G + +AVD +GQSKG+ +V + + A A
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
Query: 390 EL------DKQIFQGRLLHILPAD-AKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFS 442
+L DKQ++ G +H L D + + K +KNL E
Sbjct: 192 KLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDE------------E 239
Query: 443 WNSLYMNQDAVLSSVADKLGMKKSE---LIDAENSSSAVKQALAEASVIGDVRKFF---- 495
N ++ S V + G KS+ ++ ENS A + A D +++F
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 496 ---ETRGVDLTKFAQLKNSERDDRV----ILVKNFPYGTTREEIAELFLPFGKLQ--RLL 546
R +L + + E D+ + VKN T +++ E F PFG + +++
Sbjct: 300 QKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVM 359
Query: 547 LPPSG 551
PSG
Sbjct: 360 RDPSG 364
>Hs21361783 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 53.5 bits (127), Expect = 1e-06
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ +D R+ F YG + +V+I +D T + +GFAYV F++ A A L
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRGAEDALYNL 71
Query: 392 DKQIFQGRLLHILPAD----------AKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTF 441
+++ GR + I A +K+ H D + QR + +++
Sbjct: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSS------ 125
Query: 442 SWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVD 501
SW D++ S + KS ++ S ++ + A R+ F +RG
Sbjct: 126 SWGRNRRRSDSLKESRHRRFSYSKS-----KSRSKSLPRRSTSARQSRTPRRNFGSRGRS 180
Query: 502 LTKFAQLKN 510
+K Q ++
Sbjct: 181 RSKSLQKRS 189
>At3g10400 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 53.5 bits (127), Expect = 1e-06
Identities = 31/97 (31%), Positives = 53/97 (53%), Gaps = 2/97 (2%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L++ N+ ++ T D LFS +G++ V + D T QS+G A+VL+ + ++AA A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 392 DKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQR 428
D +I GR L + + A + + EF K + K R
Sbjct: 119 DAKILNGRKLTV--SIAADNGRASEFIKKRVYKDKSR 153
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 53.1 bits (126), Expect = 2e-06
Identities = 52/251 (20%), Positives = 102/251 (39%), Gaps = 16/251 (6%)
Query: 584 EKGPSDCFTRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLPAAXXXXXXXXXXXX 643
++G S+ + + D ++ E++ S D + ++ PA+
Sbjct: 198 KEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQ 257
Query: 644 XVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAE 703
+ T ++F+ L+++ Q L ++F+ + V A+V Q G+ S G+G+ +
Sbjct: 258 --DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG---QSGR--SKGYGYVD 310
Query: 704 FKTKEQANAVISAMEGTILDGHKLQLKLSHRQ-------GXXXXXXXXXXXXXXXXXXXX 756
F+T E A A ++A +DG + L LS+ +
Sbjct: 311 FETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFV 370
Query: 757 XXLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGV 815
L F AT D+ F G ++S+R+P +GF +V F A+ + ++ G
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGH 429
Query: 816 HLLGRRLVMEF 826
+ GR ++F
Sbjct: 430 FIAGRPCRLDF 440
>At4g20030 [R] KOG0118 FOG: RRM domain
Length = 115
Score = 53.1 bits (126), Expect = 2e-06
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 339 YTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQG 398
++ +ED ++ FS +GE+ EV + D +SKG+A++ F + D+A A +D++++ G
Sbjct: 12 FSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNG 71
Query: 399 RLLHILPADAKKSHKLDEFDLKNL--PLKKQRELKRKAN 435
R+++I D K K D L P +K E + AN
Sbjct: 72 RMIYI---DIAKPGKRDFQGLPRTSGPPEKSDEPEEAAN 107
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 52.8 bits (125), Expect = 2e-06
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 16/198 (8%)
Query: 645 VQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEF 704
V G S+++ +L+F+ T QL + F V QV + + S+G+G+ +
Sbjct: 40 VTHGALCSLYVGDLDFNVTDSQLYDYFTE-----VCQVVSVRVCRDAATNTSLGYGYVNY 94
Query: 705 KTKEQANAVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEAT 764
+ A + + + L+G +++ S R L
Sbjct: 95 SNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKN--------LDKSVD 146
Query: 765 RKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL-V 823
K + E FS G + S +V +RG+ FV+F A+NA+++L G L +++ V
Sbjct: 147 NKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Query: 824 MEFVEQDPEDVEQQIEKM 841
F+ + E+ E +KM
Sbjct: 207 GPFLRK--EERESAADKM 222
Score = 52.0 bits (123), Expect = 4e-06
Identities = 44/194 (22%), Positives = 76/194 (38%), Gaps = 24/194 (12%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++++KNL+ +TT +L F + A V D K S FGF F+ E A
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK------SRCFGFVNFENPEDAA 279
Query: 712 AVISAMEGTILDG-------------HKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXX 758
+ A+ G D +L+L + QG
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKN----- 334
Query: 759 LPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLL 818
L T + + ELF+ FG + S +V + +++G FV F EA ++++ G +
Sbjct: 335 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Query: 819 GRRLVMEFVEQDPE 832
G+ L + ++ E
Sbjct: 395 GKPLYVALAQRKEE 408
Score = 52.0 bits (123), Expect = 4e-06
Identities = 61/246 (24%), Positives = 106/246 (42%), Gaps = 36/246 (14%)
Query: 330 GRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFV 389
G LF++N+ + + FS G + +A D GQS+G+ +V F D+A A
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 390 EL------DKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSW 443
+L DKQIF G L ++ D+ N+ +K E + + TF
Sbjct: 193 KLNGKVLNDKQIFVGPFLR----KEERESAADKMKFTNVYVKNLSEATTD-DELKTTFG- 246
Query: 444 NSLYMNQDAVLSSVADKLGMKKSE---LIDAENSSSAVKQALA--------EASVIGDVR 492
++ S+V + G KS ++ EN A + A + +G +
Sbjct: 247 -----QYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQ 301
Query: 493 KFFETRGVDLTKFAQLKNSERDDRV----ILVKNFPYGTTREEIAELFLPFGKLQ--RLL 546
K E R ++L++ + +S+ ++ + VKN T E++ ELF FG + +++
Sbjct: 302 KKSE-RELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM 360
Query: 547 LPPSGT 552
PSGT
Sbjct: 361 RDPSGT 366
>At2g22100 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/82 (32%), Positives = 45/82 (53%), Gaps = 1/82 (1%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
+F+R + + T ++ + F YGE+ E + +D TG++KGF +VLFK A A
Sbjct: 117 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 176
Query: 392 DKQIFQGRLLHILPADAKKSHK 413
+K+++ R + LPA S K
Sbjct: 177 EKRMY-NRTVSCLPARPFNSGK 197
>HsM18152777 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 52.4 bits (124), Expect = 3e-06
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ +D R+ F YG + +V+I +D T + +GFAYV F++ +A A L
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 392 DKQIFQGRLLHILPAD----------AKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTF 441
+++ GR + I A +K+ H D + QR + +++
Sbjct: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSS------ 125
Query: 442 SWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVD 501
SW D++ S + +S ++ S ++ + A R+ F +RG
Sbjct: 126 SWGRNRRRSDSLKESRHRRFSYSQS-----KSRSKSLPRRSTSARQSRTPRRNFGSRGRS 180
Query: 502 LTKFAQLKN 510
+K Q ++
Sbjct: 181 RSKSLQKRS 189
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 52.4 bits (124), Expect = 3e-06
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387
+ G+LF+ I + E+ R FS YG++ E I D TG+++GF +++F AD +
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF--ADPCVSE 61
Query: 388 FVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKAN 435
V +DK I GR + +AKK+ +P Q+ LKR A+
Sbjct: 62 RVIMDKHIIDGRTV-----EAKKA----------VPRDDQQVLKRHAS 94
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 52.4 bits (124), Expect = 3e-06
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 325 KIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNA 384
K + + +++ I + TE D +FS YGE+ +V++ D TG+SKGFA++ +++ +
Sbjct: 31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90
Query: 385 ATAFVELDKQIFQGRLLHILPADAKKSHKLDE 416
A L+ + GR + + A K H+ ++
Sbjct: 91 ILAVDNLNGALVLGRTIKVDHCGAYKKHEEED 122
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 52.4 bits (124), Expect = 3e-06
Identities = 31/94 (32%), Positives = 52/94 (54%), Gaps = 7/94 (7%)
Query: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387
+ G+LF+ I + E+ ++ FS +GE+ E I D TG+++GF +V+F AD A
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF--ADPAVAE 61
Query: 388 FVELDKQIFQGRLLHILPADAKKSHKLDEFDLKN 421
V +K GRL+ +AKK+ D+ ++ N
Sbjct: 62 IVITEKHNIDGRLV-----EAKKAVPRDDQNMVN 90
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 52.0 bits (123), Expect = 4e-06
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++ KNL + T +L E F+ A+++ + GK S G + EFKT+ A
Sbjct: 394 TLLAKNLPYKVTQDELKEVFED-----AAEIRLV---SKDGK--SKGIAYIEFKTEADAE 443
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXX--XXLPFEATRKDVF 769
+GT +DG + L + +G L + AT + +
Sbjct: 444 KTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQ 503
Query: 770 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVME 825
E+F + ++VP+ + ++G+AF+EF ++A+ A++ + GR + +E
Sbjct: 504 EVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 556
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 52.0 bits (123), Expect = 4e-06
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 338 LYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQ 397
LYT TE D R++FS YG + +V I D ++ +S+GFA+V F+N D+A A +
Sbjct: 127 LYT-TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 185
Query: 398 GRLLHILPADAKKSH 412
GR + + + K+ H
Sbjct: 186 GRRIRVDFSITKRPH 200
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 52.0 bits (123), Expect = 4e-06
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711
++ KNL + T +L E F+ A+++ + GK S G + EFKT+ A
Sbjct: 394 TLLAKNLPYKVTQDELKEVFED-----AAEIRLV---SKDGK--SKGIAYIEFKTEADAE 443
Query: 712 AVISAMEGTILDGHKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXX--XXLPFEATRKDVF 769
+GT +DG + L + +G L + AT + +
Sbjct: 444 KTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQ 503
Query: 770 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVME 825
E+F + ++VP+ + ++G+AF+EF ++A+ A++ + GR + +E
Sbjct: 504 EVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 556
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 52.0 bits (123), Expect = 4e-06
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 323 LKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNAD 382
++ + G+LF+ I + E+ ++ F YG+L E I D TG+++GF +++F AD
Sbjct: 1 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF--AD 58
Query: 383 NAATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKAN 435
+ V +DK I GR + +AKK+ +P Q+ LKR A+
Sbjct: 59 PSVAERVIMDKHIIDGRTV-----EAKKA----------VPRDDQQVLKRHAS 96
>Hs5730079 [R] KOG0118 FOG: RRM domain
Length = 183
Score = 51.6 bits (122), Expect = 5e-06
Identities = 25/72 (34%), Positives = 42/72 (57%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ +D R+ F YG + +V++ +D T + +GFAYV F++ +A A L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 392 DKQIFQGRLLHI 403
D++ GR + I
Sbjct: 72 DRKWICGRQIEI 83
>Hs22059019 [R] KOG0118 FOG: RRM domain
Length = 182
Score = 51.6 bits (122), Expect = 5e-06
Identities = 25/72 (34%), Positives = 42/72 (57%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ +D R+ F YG + +V++ +D T + +GFAYV F++ +A A L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 392 DKQIFQGRLLHI 403
D++ GR + I
Sbjct: 72 DRKWICGRQIEI 83
>Hs16905517 [R] KOG0118 FOG: RRM domain
Length = 262
Score = 51.6 bits (122), Expect = 5e-06
Identities = 25/72 (34%), Positives = 42/72 (57%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
LF+RN+ +D R+ F YG + +V++ +D T + +GFAYV F++ +A A L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 392 DKQIFQGRLLHI 403
D++ GR + I
Sbjct: 72 DRKWICGRQIEI 83
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 51.2 bits (121), Expect = 7e-06
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAAT 386
R +F+ NI Y ATE+ + +FS G + + D TG+ KG+ + +++ + A +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 387 AFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNL 422
A L+ + F GR L + A ++K+ + +LK+L
Sbjct: 73 AMRNLNGREFSGRALRVDNAASEKNKE----ELKSL 104
>At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1003
Score = 51.2 bits (121), Expect = 7e-06
Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 210 DADEDTDMFKLPGNESDDEYVSLNGGSNNANTDEPEPQMMSLDTFDTAGPTSTDDMAKDE 269
+ DE + PG+++DD+ GSN ++ D D TD +DE
Sbjct: 444 EVDEAVESHPPPGDDTDDD----EDGSN---------KLTESDALDK--DVGTDMNFEDE 488
Query: 270 AVSDLDWLKNRRVRIKDGADTPV--------SKXXXXXXXXXXXXXXXXXXXXXXXXXXK 321
A LKN K TP SK
Sbjct: 489 ADVARKVLKNLLASSKGSTATPEGETEESDKSKLKSSSTKPVADSSGVSEPLKSGKTKVV 548
Query: 322 SLKKIRETG----RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVL 377
+ K+ ++ LF+RN+ + T+++ ++ F+ +GE+E + + + T + +G A+V
Sbjct: 549 APKETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVK 608
Query: 378 FKNADNAATAFVELDKQ-----IFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRE 429
FK AD + A D + +GR L+++ A KK+ K++ LKK E
Sbjct: 609 FKTADASVAAISAADTASGVGVLLKGRQLNVMRAVGKKA-------AKDIELKKTEE 658
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 51.2 bits (121), Expect = 7e-06
Identities = 27/82 (32%), Positives = 43/82 (51%), Gaps = 1/82 (1%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L+++N+ T +D R FSPYG + + D G+SKGF +V F A A A EL
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347
Query: 392 DKQIFQGRLLHILPADAKKSHK 413
+ ++ + L++ A K+ K
Sbjct: 348 NGRVVGSKPLYVALAQRKEERK 369
>SPBC1861.04c [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 1014
Score = 50.8 bits (120), Expect = 9e-06
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 30/262 (11%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L++ N T E D KLFS YG + +V R ++ F YV + D A A ++L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFP-SLRYNTNRRFCYVQMRKPDEAHNA-LQL 725
Query: 392 DKQ------------------------IFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQ 427
K+ +++GR L++ D K + K E ++ +
Sbjct: 726 HKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVES 785
Query: 428 RELKRKANSAQQTFSWNSLYMNQDA--VLSSVADKLGMKKSELIDAENSSSAVKQALAEA 485
+ ++ N + F + + NQDA LS+ +LG + ++ ++ S K ++ +
Sbjct: 786 VRIPKRFNQ-HKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSKPRESLEKTRVS-S 843
Query: 486 SVIGDVRKFFETRGVDLTKFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRL 545
+ + K FET + + + + + V N + LF +GKL R+
Sbjct: 844 NDNRTLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKLYRV 903
Query: 546 LLPPSGTIAILQFRDVPAARAA 567
+L P A+++F D+ A A
Sbjct: 904 VLHPEHEGAVVEFLDIHDAGKA 925
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 50.8 bits (120), Expect = 9e-06
Identities = 31/121 (25%), Positives = 62/121 (50%), Gaps = 4/121 (3%)
Query: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
RL + NI + T++D + +F P+G++E VH+ D + +SKGF Y+ ++N +A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEK 399
Query: 391 LDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNSLYMNQ 450
++ GR + + + K + + LK + +++ + Q +S Y +Q
Sbjct: 400 MNGFDLAGRNMRVCLGNDKFTTETTSSMLKRF---DETLARQERSQPSQRNGGSSTYESQ 456
Query: 451 D 451
D
Sbjct: 457 D 457
>Hs7657383 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)
Length = 471
Score = 50.8 bits (120), Expect = 9e-06
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
K + RLF+ N+ TE++ RKLF YG+ EV I D KGF ++ +
Sbjct: 68 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTL 121
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSW 443
A A VELD +G+ L + A S ++NLP EL +A S
Sbjct: 122 AEIAKVELDNMPLRGKQLRVRFACHSAS-----LTVRNLPQYVSNELLEEAFSV------ 170
Query: 444 NSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLT 503
Q + D G + I + A ++AL S + F R V +
Sbjct: 171 ----FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTF-PRPVTVE 225
Query: 504 KFAQLKNSERDDRVILVKNFPYGTTREE 531
QL + E +++KN + RE+
Sbjct: 226 PMDQLDDEEGLPEKLVIKNQQFHKEREQ 253
>Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 509
Score = 50.8 bits (120), Expect = 9e-06
Identities = 49/217 (22%), Positives = 92/217 (41%), Gaps = 18/217 (8%)
Query: 651 VSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQA 710
+ +F+ + S + ++L E F+P+ V Q+ D Q S G F F T++ A
Sbjct: 35 IKMFVGQIPRSWSEKELKELFEPYGA--VYQINVLRDRSQ-NPPQSKGCCFVTFYTRKAA 91
Query: 711 NAVISAMEGT-ILDG--HKLQLKLSHRQGXXXXXXXXXXXXXXXXXXXXXXLPFEATRKD 767
+A+ L G H +Q+K + + + D
Sbjct: 92 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSK---------KCNEND 142
Query: 768 VFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAEN---AMDQLQGVHLLGRRLVM 824
+ +FS FGQ++ R+ + D +RG AFV F A+N AM Q Q + +V+
Sbjct: 143 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 202
Query: 825 EFVEQDPEDVEQQIEKMTRKVKKQVNTTKIANMRNSG 861
+F + + ++++++ + +Q+NT N+ G
Sbjct: 203 KFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLG 239
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 50.8 bits (120), Expect = 9e-06
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAAT 386
R +F+ NI Y ATE+ + +FS G + + D TG+ KG+ + +++ + A +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 387 AFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNL 422
A L+ + F GR L + A ++K+ + +LK+L
Sbjct: 73 AMRNLNGREFSGRALRVDNAASEKNKE----ELKSL 104
>Hs22058338 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)
Length = 390
Score = 50.8 bits (120), Expect = 9e-06
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 324 KKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADN 383
K + RLF+ N+ TE++ RKLF YG+ EV I D KGF ++ +
Sbjct: 68 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTL 121
Query: 384 AATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSW 443
A A VELD +G+ L + A S ++NLP EL +A S
Sbjct: 122 AEIAKVELDNMPLRGKQLRVRFACHSAS-----LTVRNLPQYVSNELLEEAFSV------ 170
Query: 444 NSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLT 503
Q + D G + I + A ++AL S + F R V +
Sbjct: 171 ----FGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTF-PRPVTVE 225
Query: 504 KFAQLKNSERDDRVILVKNFPYGTTREE 531
QL + E +++KN + RE+
Sbjct: 226 PMDQLDDEEGLPEKLVIKNQQFHKEREQ 253
>CE27910 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 126
Score = 50.8 bits (120), Expect = 9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L + N+ Y T +D R+ F YG++ +VHI D + QSKGF +V F +A A
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 392 DKQIFQGRLLHI 403
D ++ GR L +
Sbjct: 81 DGKLVDGRELRV 92
>CE01891 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 196
Score = 50.8 bits (120), Expect = 9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
L + N+ Y T +D R+ F YG++ +VHI D + QSKGF +V F +A A
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 392 DKQIFQGRLLHI 403
D ++ GR L +
Sbjct: 81 DGKLVDGRELRV 92
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,090,845
Number of Sequences: 60738
Number of extensions: 1738999
Number of successful extensions: 7556
Number of sequences better than 1.0e-05: 64
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 6986
Number of HSP's gapped (non-prelim): 409
length of query: 878
length of database: 30,389,216
effective HSP length: 115
effective length of query: 763
effective length of database: 23,404,346
effective search space: 17857515998
effective search space used: 17857515998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)