ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3920 good U KOG3487 Intracellular trafficking, secretion, and vesicular transport TRAPP 20 K subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3920 1329234 1328761 -158
(158 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR254c [U] KOG3487 TRAPP 20 K subunit 181 5e-46
SPBC11G11.04 [U] KOG3487 TRAPP 20 K subunit 107 9e-24
Hs7657548 [U] KOG3487 TRAPP 20 K subunit 102 3e-22
CE14652 [U] KOG3487 TRAPP 20 K subunit 86 2e-17
7294178 [U] KOG3487 TRAPP 20 K subunit 84 8e-17
At1g80500 [U] KOG3487 TRAPP 20 K subunit 49 4e-06
>YBR254c [U] KOG3487 TRAPP 20 K subunit
Length = 175
Score = 181 bits (458), Expect = 5e-46
Identities = 89/168 (52%), Positives = 118/168 (69%), Gaps = 15/168 (8%)
Query: 3 YFTIIGTSDNPIYEAEFTTAKNT--FQPEIKELNPYIVHSTLDIMEYLQWQRQPQLDIN- 59
YF IIG DNP+YE EFT A+N F ++KELNP+I+H++LDI+E LQWQ P +N
Sbjct: 4 YFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNG 63
Query: 60 ------TSSGGFLRSRH-STQENSYLGKVDSFYGLAVSGFLTYGNIKFIMVHGNGT---- 108
GGFLRSR + +N YLGKVD FYGLA++ +++Y +KF+M+HGN
Sbjct: 64 NGGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSV 123
Query: 109 -VDDTVTRSFYYEVYELYLKTLMNPFYKVNDPISNSAFDSKVRVLSKR 155
+DD RSFY EV+ELY+KTLMNPFYK+ DPI + AFDS+VR L+++
Sbjct: 124 VIDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARK 171
>SPBC11G11.04 [U] KOG3487 TRAPP 20 K subunit
Length = 136
Score = 107 bits (266), Expect = 9e-24
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 24/154 (15%)
Query: 3 YFTIIGTSDNPIYEAEFTTAKNTFQPEIKE-LNPYIVHSTLDIMEYLQWQRQPQLDINTS 61
Y IIGT DNP+YE E + LN +IVHS+LDI++ LQW
Sbjct: 4 YAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQW----------- 52
Query: 62 SGGFLRSRHSTQENSYLGKVDSFYGLAVSGFLTYGNIKFIMVHGNGTVDDTVTRSFYYEV 121
T Y+ +D F+ + +S ++T N++F+++H N + D+ + F+ E+
Sbjct: 53 ----------TSNAFYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADNI--KLFFQEL 100
Query: 122 YELYLKTLMNPFYKVNDPISNSAFDSKVRVLSKR 155
+ELY+KTLM+PFY+ N PI + AFD KVR +++R
Sbjct: 101 HELYIKTLMSPFYQPNQPIRSQAFDLKVRSIARR 134
>Hs7657548 [U] KOG3487 TRAPP 20 K subunit
Length = 140
Score = 102 bits (253), Expect = 3e-22
Identities = 58/155 (37%), Positives = 84/155 (53%), Gaps = 24/155 (15%)
Query: 2 FYFTIIGTSDNPIYEAEFTTA-KNTFQPEIKELNPYIVHSTLDIMEYLQWQRQPQLDINT 60
FYF I+G DNP++E EF A K + + + LN +I H+ LD+++ W
Sbjct: 5 FYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMW---------- 54
Query: 61 SSGGFLRSRHSTQENSYLGKVDSFYGLAVSGFLTYGNIKFIMVHGNGTVDDTVTRSFYYE 120
N YL VD F VS F+T G+++FIM+H D ++F+ +
Sbjct: 55 -----------LSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGI--KNFFTD 101
Query: 121 VYELYLKTLMNPFYKVNDPISNSAFDSKVRVLSKR 155
VY+LY+K MNPFY+ N PI +SAFD KV+ L K+
Sbjct: 102 VYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKK 136
>CE14652 [U] KOG3487 TRAPP 20 K subunit
Length = 141
Score = 85.9 bits (211), Expect = 2e-17
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 27/157 (17%)
Query: 2 FYFTIIGTSDNPIYEAEFTTA-KNTFQPE-IKELNPYIVHSTLDIMEYLQWQRQPQLDIN 59
FYF IIG D PI+E +F K T + E + LN YI H+ LDI++
Sbjct: 6 FYFAIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVD------------- 52
Query: 60 TSSGGFLRSRHS-TQENSYLGKVDSFYGLAVSGFLTYGNIKFIMVHGNGTVDDTVTRSFY 118
H+ T YL VD F VS F+T I+FIM+H + D + F+
Sbjct: 53 ---------EHALTTSQMYLKMVDKFNEWYVSAFVTASRIRFIMLHTHRA--DEGIKQFF 101
Query: 119 YEVYELYLKTLMNPFYKVNDPISNSAFDSKVRVLSKR 155
E+YE Y+K MNPFY+++D I + AF+ K + ++
Sbjct: 102 QEMYETYIKHAMNPFYEIDDVIESPAFEQKATLYGRK 138
>7294178 [U] KOG3487 TRAPP 20 K subunit
Length = 158
Score = 84.0 bits (206), Expect = 8e-17
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 43/174 (24%)
Query: 2 FYFTIIGTSDNPIYEAEFTTAKNTFQ--------------------PEIKELNPYIVHST 41
+YF I+G +DNPIYE EF+T + + + L +I H+
Sbjct: 4 YYFVIVGQNDNPIYEKEFSTVNKELRVCRPGQRLIELCKYILLLQKEDHRHLTQFIAHAA 63
Query: 42 LDIMEYLQWQRQPQLDINTSSGGFLRSRHSTQENSYLGKVDSFYGLAVSGFLTYGNIKFI 101
LD+++ +W+ N L +D F VS F+T I+FI
Sbjct: 64 LDLVDEHKWKTA---------------------NMQLKSIDRFNQWFVSAFITASQIRFI 102
Query: 102 MVHGNGTVDDTVTRSFYYEVYELYLKTLMNPFYKVNDPISNSAFDSKVRVLSKR 155
+VH N +D ++F+ E+Y+ Y+K MN FY++N PI + F+ K + ++
Sbjct: 103 IVHDNK--NDEGIKNFFNEMYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRK 154
>At1g80500 [U] KOG3487 TRAPP 20 K subunit
Length = 81
Score = 48.5 bits (114), Expect = 4e-06
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 23/97 (23%)
Query: 4 FTIIGTSDNPIYEAEFTTAKNTFQPEIKELNPYIVHSTLDIMEYLQWQRQPQLDINTSSG 63
F I+G +D PIYEAE +A + + +L+ +I+H+ LD+++ L W T+S
Sbjct: 7 FIIVGRNDIPIYEAEVGSAAK--REDAAQLHQFILHAALDVVQDLAW---------TTSA 55
Query: 64 GFLRSRHSTQENSYLGKVDSFYGLAVSGFLTYGNIKF 100
FL+S VD F L VS ++T G+I F
Sbjct: 56 MFLKS------------VDRFNDLVVSVYVTAGHILF 80
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,676,538
Number of Sequences: 60738
Number of extensions: 397900
Number of successful extensions: 976
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 30,389,216
effective HSP length: 97
effective length of query: 61
effective length of database: 24,497,630
effective search space: 1494355430
effective search space used: 1494355430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)