ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3941 good H KOG3310 Coenzyme transport and metabolism Riboflavin synthase alpha chain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3941 1336230 1335526 -235
(235 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR256c [H] KOG3310 Riboflavin synthase alpha chain 317 1e-86
SPCC1450.13c [H] KOG3310 Riboflavin synthase alpha chain 201 7e-52
At2g20690 [H] KOG3310 Riboflavin synthase alpha chain 160 1e-39
>YBR256c [H] KOG3310 Riboflavin synthase alpha chain
Length = 238
Score = 317 bits (811), Expect = 1e-86
Identities = 155/238 (65%), Positives = 196/238 (82%), Gaps = 3/238 (1%)
Query: 1 MFTGIVEHIGTVAEYKELDETLSGGNGVSVTIKDAAPVLSDCHIGDSIACNGICLTVTEF 60
MFTGIVE +GTV E D++ SGG GVS+TI +A +L+DCH+GDSIA NG+CLTVTEF
Sbjct: 1 MFTGIVECMGTVLENNPYDDSESGGQGVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEF 60
Query: 61 DSNSFKVGISPETVSRTDISSWKTGTKVNLERAVSQDVRFGGHYVQGHVDTVATIKSRTV 120
+++SFKVGISPET+ R++++SW GT+VNLERAVSQDVRFGGHYVQGHVDTVA I SR
Sbjct: 61 NNDSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFGGHYVQGHVDTVANIVSRRP 120
Query: 121 DGNSIVFGFKLGEQSYEKFIVEKGFISLDGTSLTVTTID---DDGTFYIAMIKHTQEHVI 177
+GNSI+FGF+L +Q Y K+IVEKGFI +DGTSLT+ +D G FYI+MIKHTQ++VI
Sbjct: 121 EGNSIIFGFQLRDQEYFKYIVEKGFICIDGTSLTIIKVDPLSQGGAFYISMIKHTQDNVI 180
Query: 178 MPLKQVGDLVNVEVDVTGKVIEKQIEVHLQAQIADSKSSLSQLIGKIVEEKVRNALNK 235
MPLK++GD VN+EVD+TGK+IEKQI + L+ QI+ S+L+ +I I+EEKVRN LNK
Sbjct: 181 MPLKKIGDEVNIEVDLTGKIIEKQILLTLENQISKKDSTLNTMISNIIEEKVRNYLNK 238
>SPCC1450.13c [H] KOG3310 Riboflavin synthase alpha chain
Length = 208
Score = 201 bits (511), Expect = 7e-52
Identities = 109/206 (52%), Positives = 136/206 (65%), Gaps = 7/206 (3%)
Query: 1 MFTGIVEHIGTVAEYKELDETLSGGNGVSVTIKDAAPVLSDCHIGDSIACNGICLTVTEF 60
MFTG+VE IG V K++ T+ G + + +A +L DCH GDSIA NG CLTVT+F
Sbjct: 1 MFTGLVEAIGVV---KDVQGTIDNGFAMKI---EAPQILDDCHTGDSIAVNGTCLTVTDF 54
Query: 61 DSNSFKVGISPETVSRTDISSWKTGTKVNLERAVSQDVRFGGHYVQGHVDTVATIKSRTV 120
D F VGI+PE++ T++ K G VNLERAV R GGH+VQGHVDTVA I +
Sbjct: 55 DRYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQ 114
Query: 121 DGNSIVFGFKLGEQSYEKFIVEKGFISLDGTSLTVTTIDDDGTFYIAMIKHTQEHVIMPL 180
DG +I F F+ + K+IV KG+I+LDGTSLT+T + DD TF I MI +TQ VIM
Sbjct: 115 DGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV-DDSTFSIMMISYTQSKVIMAK 173
Query: 181 KQVGDLVNVEVDVTGKVIEKQIEVHL 206
K VGDLVNVEVD GK EK +E H+
Sbjct: 174 KNVGDLVNVEVDQIGKYTEKLVEAHI 199
>At2g20690 [H] KOG3310 Riboflavin synthase alpha chain
Length = 197
Score = 160 bits (406), Expect = 1e-39
Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 5/190 (2%)
Query: 12 VAEYKELDETLSGGNGVSVTIKDAAPVLSDCHIGDSIACNGICLTVTEFDSNSFKVGISP 71
+ E K+L GG + + A VL D +GDSIA NG CLTVTEF++ F VG++P
Sbjct: 1 MGEVKDLGMADHGGFDLKI---GARVVLEDVKLGDSIAVNGTCLTVTEFNAEEFTVGLAP 57
Query: 72 ETVSRTDISSWKTGTKVNLERAVSQDVRFGGHYVQGHVDTVATIKSRTVDGNSIVFGFKL 131
ET+ +T + K G+ VNLERA+ R GGH VQGHVD I+S V+G+S+ K
Sbjct: 58 ETLRKTSLEELKKGSPVNLERALQPVSRMGGHVVQGHVDGTGVIESMEVEGDSLWVKVK- 116
Query: 132 GEQSYEKFIVEKGFISLDGTSLTVTTI-DDDGTFYIAMIKHTQEHVIMPLKQVGDLVNVE 190
++ K+IV KGF+++DGTSLTV + D++ F MI +TQ++V++P K++G VN+E
Sbjct: 117 ADKGLLKYIVPKGFVAVDGTSLTVVDVFDEESCFNFMMIAYTQQNVVIPTKKIGQKVNLE 176
Query: 191 VDVTGKVIEK 200
VD+ GK +E+
Sbjct: 177 VDIMGKYVER 186
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,006,777
Number of Sequences: 60738
Number of extensions: 522520
Number of successful extensions: 1362
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 30,389,216
effective HSP length: 103
effective length of query: 132
effective length of database: 24,133,202
effective search space: 3185582664
effective search space used: 3185582664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)