ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV3987   suspect: LH   J     KOG3504  Translation, ribosomal structure and biogenesis                60S ribosomal protein L29

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV3987 1353657 1352383 -425 
         (425 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YFR032c [J] KOG3504 60S ribosomal protein L29                          80   4e-15

>YFR032c [J] KOG3504 60S ribosomal protein L29
          Length = 289

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 4/90 (4%)

Query: 7   VYISNLSFEASENQLYEYLQDYNVISVLIPSQTVRGLKNK----AVRPFGIAYAEFSNEE 62
           VYISNL F ASE  L+ +L +Y   SVLIP+QTVR    +      +P GIA+A+F+N  
Sbjct: 20  VYISNLPFTASERDLHAFLNNYGASSVLIPTQTVRRFSKRHNSNPRKPLGIAFAQFANNT 79

Query: 63  DANKVIQELNGKLFMERHLNLRMHIPIDSN 92
            A K IQ+LNG +F  + L L++H+P +++
Sbjct: 80  LALKAIQDLNGTVFQNQKLFLKLHVPYEAD 109



 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 33/92 (35%), Positives = 55/92 (58%), Gaps = 5/92 (5%)

Query: 238 IPRNTTDNQLREYFKGFDPQEIVVFKNRTYRR---GFTFHRHFTAALVTFPDAFRLND-A 293
           +P + TD+++RE F+ + PQEI +++++ YRR    F  H+  TAALVT      + D  
Sbjct: 141 LPDDITDSEIRELFQLYSPQEIWIYRSKVYRRKCIPFAPHQ-ITAALVTLQSETPIGDIC 199

Query: 294 KQFATQEKFRGKQINVKNAFIEKIEEVQRALE 325
              A     RGK I VK A++ KI+E+++ ++
Sbjct: 200 DSVAKTATLRGKSIIVKPAYVSKIQEIKQLVK 231


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,096,592
Number of Sequences: 60738
Number of extensions: 963393
Number of successful extensions: 3489
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3486
Number of HSP's gapped (non-prelim): 2
length of query: 425
length of database: 30,389,216
effective HSP length: 109
effective length of query: 316
effective length of database: 23,768,774
effective search space: 7510932584
effective search space used: 7510932584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)