ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3990 good J KOG3504 Translation, ribosomal structure and biogenesis 60S ribosomal protein L29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3990 1354437 1354252 -62
(62 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFR032c-a [J] KOG3504 60S ribosomal protein L29 102 1e-22
SPBC776.01 [J] KOG3504 60S ribosomal protein L29 78 3e-15
Hs4506629 [J] KOG3504 60S ribosomal protein L29 75 2e-14
CE15559 [J] KOG3504 60S ribosomal protein L29 71 3e-13
At3g06700 [J] KOG3504 60S ribosomal protein L29 69 1e-12
At3g06680 [J] KOG3504 60S ribosomal protein L29 69 1e-12
7291277 [J] KOG3504 60S ribosomal protein L29 64 3e-11
Hs20550589 [J] KOG3504 60S ribosomal protein L29 64 5e-11
Hs20555958 [J] KOG3504 60S ribosomal protein L29 63 9e-11
Hs22060941 [J] KOG3504 60S ribosomal protein L29 54 4e-08
CE25306 [J] KOG3504 60S ribosomal protein L29 48 3e-06
>YFR032c-a [J] KOG3504 60S ribosomal protein L29
Length = 59
Score = 102 bits (254), Expect = 1e-22
Identities = 46/50 (92%), Positives = 48/50 (96%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFALHGT 50
MAKSKNHTAHNQT+KAHRNGIKKPKTYKYPSLKGVD KFRRNH+ ALHGT
Sbjct: 1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHALHGT 50
>SPBC776.01 [J] KOG3504 60S ribosomal protein L29
Length = 61
Score = 77.8 bits (190), Expect = 3e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFALHGT 50
MAKSKNHT HNQ KKAHRNGIK+P+ ++Y SLK DAKFRRN +FA GT
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGT 50
>Hs4506629 [J] KOG3504 60S ribosomal protein L29
Length = 159
Score = 75.1 bits (183), Expect = 2e-14
Identities = 34/46 (73%), Positives = 39/46 (83%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
MAKSKNHT HNQ++K HRNGIKKP++ +Y SLKGVD KF RN RFA
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>CE15559 [J] KOG3504 60S ribosomal protein L29
Length = 62
Score = 70.9 bits (172), Expect = 3e-13
Identities = 33/46 (71%), Positives = 38/46 (81%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
MAKSKNHT HNQ KKAHRNGI KPK + + S+KGVDAKF +N RF+
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFS 46
>At3g06700 [J] KOG3504 60S ribosomal protein L29
Length = 61
Score = 68.9 bits (167), Expect = 1e-12
Identities = 29/46 (63%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
MAKSKNHTAHNQ+ KAH+NGIKKP+ +++ +G+D KF RN R+A
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 46
>At3g06680 [J] KOG3504 60S ribosomal protein L29
Length = 61
Score = 68.9 bits (167), Expect = 1e-12
Identities = 29/46 (63%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
MAKSKNHTAHNQ+ KAH+NGIKKP+ +++ +G+D KF RN R+A
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 46
>7291277 [J] KOG3504 60S ribosomal protein L29
Length = 76
Score = 64.3 bits (155), Expect = 3e-11
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFALHG 49
MAKSKNHT HNQ KKAHRNGIK+P ++ S G+D KF N R+A G
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKG 49
>Hs20550589 [J] KOG3504 60S ribosomal protein L29
Length = 209
Score = 63.5 bits (153), Expect = 5e-11
Identities = 30/46 (65%), Positives = 35/46 (75%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
MAKSKNH H+Q +K HRNGIKKP++ + SLKGVD KF RN FA
Sbjct: 21 MAKSKNHNTHDQFQKRHRNGIKKPQSQRSVSLKGVDPKFLRNMPFA 66
>Hs20555958 [J] KOG3504 60S ribosomal protein L29
Length = 220
Score = 62.8 bits (151), Expect = 9e-11
Identities = 30/45 (66%), Positives = 34/45 (74%)
Query: 1 MAKSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRF 45
MAKSKNHT HNQ++K HRN IKKP + +Y SLKGVD KF N F
Sbjct: 1 MAKSKNHTTHNQSRKWHRNVIKKPLSQRYKSLKGVDPKFLGNMCF 45
>Hs22060941 [J] KOG3504 60S ribosomal protein L29
Length = 162
Score = 53.9 bits (128), Expect = 4e-08
Identities = 23/42 (54%), Positives = 29/42 (68%)
Query: 5 KNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRFA 46
KNH HNQ+ K HRNGI+KP++ +Y L GVD KF R+ A
Sbjct: 42 KNHNTHNQSPKWHRNGIRKPRSQRYKCLNGVDLKFLRSMHLA 83
>CE25306 [J] KOG3504 60S ribosomal protein L29
Length = 87
Score = 47.8 bits (112), Expect = 3e-06
Identities = 21/43 (48%), Positives = 30/43 (68%)
Query: 3 KSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDAKFRRNHRF 45
K +NHT HN+ KAHRNGI KPK + + S++G +F ++ RF
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRF 56
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,139,021
Number of Sequences: 60738
Number of extensions: 85425
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 11
length of query: 62
length of database: 30,389,216
effective HSP length: 38
effective length of query: 24
effective length of database: 28,081,172
effective search space: 673948128
effective search space used: 673948128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)