ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4020 good K KOG1522 Transcription RNA polymerase II, subunit POLR2C/RPB3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4020 1363732 1362812 -307
(307 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL021w [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 451 e-127
SPCC1442.10c [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 286 3e-77
7298103 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 221 1e-57
Hs14702171 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 213 2e-55
CE05370_1 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 190 2e-48
ECU06g0600 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 164 2e-40
At2g15430 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 157 1e-38
At2g15400 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3 151 1e-36
ECU01g0600 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 107 2e-23
YPR110c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 91 2e-18
7296912 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 88 1e-17
At1g60850 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 87 4e-17
Hs4759046_1 [K] KOG1521 RNA polymerase I and III subunit RPA40/R... 87 4e-17
SPBC1289.07c [K] KOG1521 RNA polymerase I and III subunit RPA40/... 84 2e-16
CE21008_2 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 84 3e-16
At1g60620 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40 82 1e-15
>YIL021w [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 318
Score = 451 bits (1159), Expect = e-127
Identities = 226/319 (70%), Positives = 257/319 (79%), Gaps = 13/319 (4%)
Query: 1 MSEEGPQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLAD 60
MSEEGPQVKIREA+KDNVDFILSNVDLA+ANSLRRVMI+EIPTLAIDSVE+ETNTTVLAD
Sbjct: 1 MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD 60
Query: 61 EFIAHRLGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQI 120
EFIAHRLGLIPLQS DI+Q+ Y RDC+CEDHCD+CSV L L A GESESTTNVY+KDL I
Sbjct: 61 EFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI 120
Query: 121 TSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEY 180
S+L GRNIGHPIIQD+E NGVLICKLRKGQE+++ C+AKKGI+KEHAKW P+AAIEFEY
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 180
Query: 181 DPWNKLKHTDYWYEQDARDEWPQSKNCXXXXXXXXXXXXXYRAKPNTFYINVESVGSITS 240
DPWNKLKHTDYWYEQD+ EWPQSKNC Y+A+ +TFY+NVESVGSI
Sbjct: 181 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV 240
Query: 241 EQVVVRGIKTLQDKVADILFSLKKMDQEKVNFAAGAVSTHVSQQVPMEEDM-------DP 293
+QVVVRGI TLQ KVA IL +L +MDQ+KVNFA+G +T S + ED+ DP
Sbjct: 241 DQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNT-ASNMLGSNEDVMMTGAEQDP 299
Query: 294 YG-----GPVGGSGYDDAW 307
Y G G GYD+AW
Sbjct: 300 YSNASQMGNTGSGGYDNAW 318
>SPCC1442.10c [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 297
Score = 286 bits (731), Expect = 3e-77
Identities = 142/305 (46%), Positives = 213/305 (69%), Gaps = 19/305 (6%)
Query: 8 VKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHRL 67
+ IR +K++VDF+L+N LA+ANSLRRV+++EIPT+AID VEI NT+V+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 68 GLIPLQSADIDQ-----VVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITS 122
G+IPL S++ID+ + Y R+C C+ +C +CSVEL L+A E T +YA+DL ++S
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSS 126
Query: 123 DLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEYDP 182
+ ++GHPI+ D ++ G LICKLRK QEI ++CIAKKGI+KEHAKWSP++A+ FEYDP
Sbjct: 127 N---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP 183
Query: 183 WNKLKHTDYWYEQDARDEWPQSKNCXXXXXXXXXXXXXYRAKPNTFYINVESVGSITSEQ 242
WNKL+HTDYW+E DA EWP+SKN ++ +P FY++VESVGSI +
Sbjct: 184 WNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNE 243
Query: 243 VVVRGIKTLQDKVADILFSLKKMDQEKVNFAAGAVSTHVSQQVPMEEDMDPYGGPVGGSG 302
++V+G++ LQ+K+A + ++ +D+E+ + + ++ MEE+ + P +G
Sbjct: 244 IMVQGLRILQEKLAVL---VRDLDEEQPTQLS-------ANELNMEENAEMNWSPY-QNG 292
Query: 303 YDDAW 307
++ W
Sbjct: 293 EENTW 297
>7298103 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 275
Score = 221 bits (562), Expect = 1e-57
Identities = 120/268 (44%), Positives = 170/268 (62%), Gaps = 11/268 (4%)
Query: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
P V+I E T DNV F+L + +L++ANSLRRV I+E PTLAID V++E N+TVL+DEF+AH
Sbjct: 7 PSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAH 66
Query: 66 RLGLIPLQSAD-IDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITS-- 122
R+GLIPL S D ++++ Y RDC C D C CSVE L E T +V DL+ ++
Sbjct: 67 RIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAK 126
Query: 123 --DLKGRNIGHPIIQDREANG-VLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFE 179
+ RN G + E+N +LI KLRKGQE++++ AKKG KEHAKW+P+A + FE
Sbjct: 127 VLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFE 186
Query: 180 YDPWNKLKHTDYWYEQDARDEWPQSKNCXXXXXXXXXXXXXYRAKPNTFYINVESVGSIT 239
YDP N ++HT Y DEWP+S++ + AKPN F+ NVES G++
Sbjct: 187 YDPDNSMRHTLY----PKPDEWPKSEH-TELEDDQYEAPYNWEAKPNKFFFNVESAGALK 241
Query: 240 SEQVVVRGIKTLQDKVADILFSLKKMDQ 267
E +VV G++ L++K++++ L Q
Sbjct: 242 PENIVVMGVQVLKNKLSNLQTQLSHESQ 269
>Hs14702171 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 275
Score = 213 bits (543), Expect = 2e-55
Identities = 121/270 (44%), Positives = 162/270 (59%), Gaps = 10/270 (3%)
Query: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
P V+I E T +NV FI+ N DLA+ANS+RRV I+E+P +AID V+I+ N++VL DEFIAH
Sbjct: 7 PTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAH 66
Query: 66 RLGLIPLQSADI-DQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITS-- 122
RLGLIPL S DI D++ Y RDC CE+ C CSVE L + T +V ++DL S
Sbjct: 67 RLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPR 126
Query: 123 --DLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEY 180
+ RN + E + +LI KLRKGQE+R++ AKKG KEHAKW+P+A + FEY
Sbjct: 127 VIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 186
Query: 181 DPWNKLKHTDYWYEQDARDEWPQSKNCXXXXXXXXXXXXXYRAKPNTFYINVESVGSITS 240
DP N L+HT Y +EWP+S+ KP FY NVES GS+
Sbjct: 187 DPDNALRHTVY----PKPEEWPKSE-YSELDEDESQAPYDPNGKPERFYYNVESCGSLRP 241
Query: 241 EQVVVRGIKTLQDKVADILFSLKKMDQEKV 270
E +V+ + L+ K++D+ L Q V
Sbjct: 242 ETIVLSALSGLKKKLSDLQTQLSHEIQSDV 271
>CE05370_1 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 303
Score = 190 bits (483), Expect = 2e-48
Identities = 104/269 (38%), Positives = 155/269 (56%), Gaps = 16/269 (5%)
Query: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
P +++ E T D + F+L + DL++ANSLRRV ++E+PT+AID V+IETNT+VL DEFIAH
Sbjct: 7 PNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAH 66
Query: 66 RLGLIP-LQSADIDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITSDL 124
R+GLIP + ++++ Y RDC C + CD CS+ IL + E+T V + L +L
Sbjct: 67 RMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHLMPMHNL 126
Query: 125 KG----------RNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSA 174
R G + +LI KLRKGQE+ +K KKG KEHAKW+P+
Sbjct: 127 DTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHAKWNPTC 186
Query: 175 AIEFEYDPWNKLKHTDYWYEQDARDEWPQSKNCXX-XXXXXXXXXXXYRAKPNTFYINVE 233
+ FEYDP N L+HT Y +EWP+S + KPN F+ ++E
Sbjct: 187 GVAFEYDPDNALRHTIY----PNVEEWPRSDHSSLPEDSTEKEAPFEPDNKPNKFWFSIE 242
Query: 234 SVGSITSEQVVVRGIKTLQDKVADILFSL 262
G++ ++++V GI L+ K+ ++ +L
Sbjct: 243 GTGALPAQRIVTMGIGILKRKLEELNMAL 271
>ECU06g0600 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 240
Score = 164 bits (414), Expect = 2e-40
Identities = 94/262 (35%), Positives = 141/262 (52%), Gaps = 32/262 (12%)
Query: 10 IREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHRLGL 69
+ E T +++ F LSN + AN+LRR++ISE+PT+AID VEIE N TVL DE +AHRLGL
Sbjct: 6 VEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 70 IPLQSADIDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITSDLKGRNI 129
IP+ S ++ Y +C C C CSV + + ++ V +D
Sbjct: 66 IPIYSK--RELKYKEECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRD------------ 111
Query: 130 GHPIIQDRE----ANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEYDPWNK 185
I+ D E +G +I KL + Q ++ +CI +KG+ K HAKWSP +AI FEYD N
Sbjct: 112 ---IVCDEEDVIIKSGPVITKLARDQGLKARCIGRKGVGKTHAKWSPVSAISFEYDKDNV 168
Query: 186 LKHTDYWYEQDARDEWPQSKNCXXXXXXXXXXXXXYRAKPNTFYINVESV-GSITSEQVV 244
+ T+YW+E+ +EWP + K + ++ VE V G VV
Sbjct: 169 RRETNYWFEESIEEEWPGVRQ----------GEANLMQKIDKIHMCVEVVEGGAGPLAVV 218
Query: 245 VRGIKTLQDKVADILFSLKKMD 266
+ G++ L++KVA + + + MD
Sbjct: 219 LEGLRILKEKVATLSSAAETMD 240
>At2g15430 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 319
Score = 157 bits (398), Expect = 1e-38
Identities = 86/183 (46%), Positives = 118/183 (63%), Gaps = 6/183 (3%)
Query: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
P++KIRE D F L D+++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 10 PKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 69
Query: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDL---Q 119
RLGLIPL S + + RDC D C+ CSVE L + ++ T +V ++DL
Sbjct: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDLYSAD 129
Query: 120 ITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFE 179
T I + E G++I KLR+GQE++++ IA+KGI K+HAKWSP+A + F
Sbjct: 130 PTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFM 189
Query: 180 YDP 182
Y+P
Sbjct: 190 YEP 192
>At2g15400 [K] KOG1522 RNA polymerase II subunit POLR2C/RPB3
Length = 319
Score = 151 bits (381), Expect = 1e-36
Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 6/183 (3%)
Query: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
P VKIRE D F L D+++AN+LRRVMISE+PT+AI V+IE N++VL DEFIA
Sbjct: 10 PTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQ 69
Query: 66 RLGLIPLQSADIDQVVYCRDCY-C--EDHCDRCSVELILHAIGESESTTNVYAKDL---Q 119
RL LIPL S + +C+DC C ++HC+ CSVE L A ++ T +V ++DL
Sbjct: 70 RLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDLYSAD 129
Query: 120 ITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFE 179
T E G++I KLR+GQE+++K +A+KGI K+HAKWSP+A + +
Sbjct: 130 PTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYM 189
Query: 180 YDP 182
Y+P
Sbjct: 190 YEP 192
>ECU01g0600 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 305
Score = 107 bits (268), Expect = 2e-23
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
+++I E + + ++F L NVD ++AN+LRR++ SE+PT+A+ + ++ N +V DEFIAHR
Sbjct: 31 EIRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHR 90
Query: 67 LGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITSDLKG 126
LGL+PL ++D ++ + E+ +R S+ L ESE NVY+ D++
Sbjct: 91 LGLVPL---EVDPEMF--EFAGEELDERNSLRFTLDVRNESEGVLNVYSDDIRWNPVGSQ 145
Query: 127 RNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEYDP 182
R I + + ++ VL+ +L +GQ+I + + K + K HAKWSP + P
Sbjct: 146 REIFRDV---KFSSRVLMFRLARGQKISAELVCTKNVGKVHAKWSPVCPATYRLMP 198
>YPR110c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 335
Score = 91.3 bits (225), Expect = 2e-18
Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 52/292 (17%)
Query: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
+V I +F L N+D ++AN+ RR+MISE+P++A + V NT+V+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 67 LGLIPLQSADIDQVVYCRDCYCEDH--CDRCSVELILHA--------------IGESEST 110
+GL+PL+ D D + + +D D ++ L L+ E +
Sbjct: 101 IGLVPLK-VDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNN 159
Query: 111 TNVYAKDLQITSDLKGRN----IGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKE 166
+VYA+DL+ + +GR P++ +L+ KLR GQEI +K GI +
Sbjct: 160 AHVYARDLKF--EPQGRQSTTFADCPVVP--ADPDILLAKLRPGQEISLKAHCILGIGGD 215
Query: 167 HAKWSPSAAIEFEYDPWNKL------------------------KHTDYWYEQDARDEWP 202
HAK+SP + + P + + +D Y +DAR +
Sbjct: 216 HAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDTV 275
Query: 203 QSKNCXXXXXXXXXXXXXYRAKPNTFYINVESVGSITSEQVVVRGIKTLQDK 254
+ R N F NVES G++T E++ + ++ L++K
Sbjct: 276 SREVLRYEEFADKVKLGRVR---NHFIFNVESAGAMTPEEIFFKSVRILKNK 324
>7296912 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 333
Score = 88.2 bits (217), Expect = 1e-17
Identities = 62/198 (31%), Positives = 105/198 (52%), Gaps = 15/198 (7%)
Query: 3 EEGPQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEF 62
+E +KI +D ++F L V A+AN+ RR+M+S++P++AI+ V I NT+++ DE
Sbjct: 38 KEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEV 97
Query: 63 IAHRLGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELILHA-------IGESEST-TNVY 114
+AHR+GL+PL+ AD Y + E ++ ++E L G+ +S ++Y
Sbjct: 98 LAHRMGLLPLR-ADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIY 156
Query: 115 AKDLQITSDLKGRNIGH--PIIQDREAN----GVLICKLRKGQEIRVKCIAKKGISKEHA 168
+ LK G I + N +LI +LR G E+ ++ +A KG+ ++HA
Sbjct: 157 KNHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHA 216
Query: 169 KWSPSAAIEFEYDPWNKL 186
K+SP A + P KL
Sbjct: 217 KFSPVATATYRLLPMIKL 234
>At1g60850 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 375
Score = 86.7 bits (213), Expect = 4e-17
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 38/206 (18%)
Query: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
+V + TK +++F + +D A AN+ RR++I+E+P++AI+ V I NT+V+ DE +AHR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 67 LGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITSDLKG 126
+GLIP+ + D ++ Y +H I+ + K L TSDLK
Sbjct: 135 MGLIPIAA---DPRLF---EYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVL--TSDLKW 186
Query: 127 RNIGHPIIQDRE----------------------ANG--------VLICKLRKGQEIRVK 156
G ++++ E AN +LI KL GQEI ++
Sbjct: 187 LPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELE 246
Query: 157 CIAKKGISKEHAKWSPSAAIEFEYDP 182
A KGI K HAKWSP + P
Sbjct: 247 AHAVKGIGKTHAKWSPVGTAWYRMHP 272
>Hs4759046_1 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 314
Score = 86.7 bits (213), Expect = 4e-17
Identities = 58/194 (29%), Positives = 102/194 (51%), Gaps = 16/194 (8%)
Query: 3 EEGPQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEF 62
E+ +V + +++++F + +D A+AN+ RR++++E+PT+A++ V + NT+++ DE
Sbjct: 46 EKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEI 105
Query: 63 IAHRLGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELIL--------HAIGESESTTNVY 114
+AHRLGLIP+ AD Y R+ E+ + +++ L HA +S +Y
Sbjct: 106 LAHRLGLIPIH-ADPRLFEY-RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 115 AKDLQITSDLKGRNIGHPIIQDREA------NGVLICKLRKGQEIRVKCIAKKGISKEHA 168
T + +G+ E + +LI +LR GQEI + KGI K+HA
Sbjct: 164 VNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 169 KWSPSAAIEFEYDP 182
K+SP A + P
Sbjct: 224 KFSPVATASYRLLP 237
>SPBC1289.07c [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 348
Score = 84.3 bits (207), Expect = 2e-16
Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
+V I ++ + F +S +D ++AN+ RR++I+EIPTLA + V I NT+++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 67 LGLIPLQSADIDQVVYCRDCYCEDHCDRCSVELILHAI------GESESTTNVYAKDLQI 120
+GL+P+ SAD D + + + ++ ++ ++ +T K L +
Sbjct: 107 IGLVPI-SADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165
Query: 121 TSDL-KGRNIGHPIIQDREA----------NGVLICKLRKGQEIRVKCIAKKGISKEHAK 169
S++ G I P + E +++ KLR GQEI ++ A GI ++HAK
Sbjct: 166 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAK 225
Query: 170 WSPSAAIEFEYDP 182
+SP A + P
Sbjct: 226 FSPVATASYRLLP 238
>CE21008_2 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 362
Score = 84.0 bits (206), Expect = 3e-16
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 18 VDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHRLGLIPLQ---- 73
++F ++ ++ +AN+LRRV+I+E+PT+A++ + + NT+V+ DE + HRLGL+PL+
Sbjct: 64 LEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPR 123
Query: 74 --SADIDQVVYCRD--CYCEDHCDRCSVELILHAIGES------ESTTNVYAKDLQITSD 123
++VV + C++ + + ++ I S T K L S
Sbjct: 124 GFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSS 183
Query: 124 LKGRNIGHPIIQDRE------------ANGVLICKLRKGQEIRVKCIAKKGISKEHAKWS 171
+ R I D++ ++ +L+ KLR GQEI C A KGI ++HAK+S
Sbjct: 184 VYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFS 243
Query: 172 PSAAIEFEYDPWNKL 186
P A + P +L
Sbjct: 244 PVATASYRLLPTIRL 258
>At1g60620 [K] KOG1521 RNA polymerase I and III subunit RPA40/RPC40
Length = 385
Score = 81.6 bits (200), Expect = 1e-15
Identities = 63/204 (30%), Positives = 97/204 (46%), Gaps = 34/204 (16%)
Query: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
+V + T+ ++ F + V +AN+ RR++++E+P++AI+ V + NT+V+ DE +AHR
Sbjct: 82 KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141
Query: 67 LGLIPL--------------QSADIDQVVYCRDCYCEDHCDRCSV------------ELI 100
LGLIP+ Q + + +V+ C R V ELI
Sbjct: 142 LGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSELI 201
Query: 101 LHAIGESESTTNVYA--KDLQITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCI 158
+ G S +T Y Q + N P ++D +LI KL GQEI ++
Sbjct: 202 KES-GGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKD-----ILIAKLGPGQEIELEAH 255
Query: 159 AKKGISKEHAKWSPSAAIEFEYDP 182
A KGI K HAKWSP A + P
Sbjct: 256 AVKGIGKTHAKWSPVATAWYRMLP 279
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,607,983
Number of Sequences: 60738
Number of extensions: 696970
Number of successful extensions: 1678
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 23
length of query: 307
length of database: 30,389,216
effective HSP length: 106
effective length of query: 201
effective length of database: 23,950,988
effective search space: 4814148588
effective search space used: 4814148588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)