ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4059 suspect: HSP K KOG1142 Transcription Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4059 1376929 1378461 511
(511 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR145w [K] KOG1142 Transcription initiation factor TFIID subuni... 213 4e-55
SPAC15A10.02 [K] KOG1142 Transcription initiation factor TFIID s... 130 6e-30
At3g10070 [K] KOG1142 Transcription initiation factor TFIID subu... 82 1e-15
Hs5032153 [K] KOG1142 Transcription initiation factor TFIID subu... 75 2e-13
At1g17440 [K] KOG1142 Transcription initiation factor TFIID subu... 68 3e-11
7299489 [K] KOG1142 Transcription initiation factor TFIID subuni... 66 1e-10
>YDR145w [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 539
Score = 213 bits (543), Expect = 4e-55
Identities = 103/170 (60%), Positives = 124/170 (72%)
Query: 335 IFKQPNPSIPISENVTASPTVSVSYRSNRPTITGGSGMNAPALTTPVMTKLPPYEVDTER 394
IFKQ P+IPISEN++ V+YRSNRPTITGGS MNA AL TP TKLPPYE+DT+R
Sbjct: 354 IFKQTEPAIPISENISTKTPAPVAYRSNRPTITGGSAMNASALNTPATTKLPPYEMDTQR 413
Query: 395 VMSKRKLRELVKTVXXXXXXXXXXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRKSDSL 454
VMSKRKLRELVKTV F+TNVT F+C+LAKHRKSD+L
Sbjct: 414 VMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNL 473
Query: 455 DVRDIQMHLERNWNIRIPGFANDEIRSTKKWNPTPSYNQMVNAINNNKTA 504
+ RDIQ+HLERNWNIRIPG++ DEIRST+KWNP+ +YNQ + +I ++K A
Sbjct: 474 EARDIQLHLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKLQSITSDKVA 523
Score = 110 bits (274), Expect = 7e-24
Identities = 67/216 (31%), Positives = 114/216 (52%), Gaps = 6/216 (2%)
Query: 6 GNVQLQNLTPASMQQLADRLKSLVNEAKRIGVDTKEGKELLRQAARIKALYEAYSKQRXX 65
G Q L P +Q++A + ++L+ EA+ +G T GKEL+ QAA+IK +Y+A + R
Sbjct: 26 GAQQNMVLQPRQLQEMAAKFRTLLTEARNVGETTPRGKELMFQAAKIKQVYDALTLNRRR 85
Query: 66 XXXXXXXXXXXVNNNATNVKSMDX----XXXXXXXXXXXXATASSNNVTNNIKVLLTPQQ 121
N+N++N S+ +SN +N IK +LTP++
Sbjct: 86 QQAAQAYNNTS-NSNSSNPASIPTENVPNSSQQQQQQQQQTRNNSNKFSNMIKQVLTPEE 144
Query: 122 REAYNRLVQKYEDDGQNIKGEFNFLKRNISVLDQEIRNRRGNSLSVQQLEVNRNELLMKI 181
+ Y +L Q ++ +IK + +LK+NI L+QEI N++ + QQL+ + ELL
Sbjct: 145 NQEYEKLWQNFQVRHTSIKEKETYLKQNIDRLEQEI-NKQTDEGPKQQLQEKKIELLNDW 203
Query: 182 RALSAQYSTLQQKYQEDRRKFYIECSQTNADLRRYL 217
+ L +Y+ L YQ ++ FY+EC++ N L ++L
Sbjct: 204 KVLKIEYTKLFNNYQNSKKTFYVECARHNPALHKFL 239
>SPAC15A10.02 [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 450
Score = 130 bits (326), Expect = 6e-30
Identities = 69/157 (43%), Positives = 97/157 (60%), Gaps = 7/157 (4%)
Query: 349 VTASPTVSVSYRSNRPTITGGSGMNAPALTTPVMTKLPPYEVDT-ERVMSKRKLRELVKT 407
V + + S +R T+TGG + L+TP +++ P YE+D R++SKRKL +L++
Sbjct: 295 VDSKSPIPFSVPPSRATLTGGYASGSIGLSTPGLSRAPHYELDNGNRLLSKRKLHDLLQQ 354
Query: 408 VXXXXXXXXXXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRKSDSLDVRDIQMHLERNW 467
+ F+ +VTNFAC+LAKHRKSD+LDVRD+Q+HLERNW
Sbjct: 355 IDSEEKIEPEVEELLLEIADE-----FVESVTNFACRLAKHRKSDTLDVRDVQLHLERNW 409
Query: 468 NIRIPGFANDEI-RSTKKWNPTPSYNQMVNAINNNKT 503
NIR+PGFA+D+I +S +K PTPSY Q NAI K+
Sbjct: 410 NIRLPGFASDDIVKSARKTGPTPSYQQKQNAIGTAKS 446
>At3g10070 [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 539
Score = 82.4 bits (202), Expect = 1e-15
Identities = 47/148 (31%), Positives = 73/148 (48%), Gaps = 19/148 (12%)
Query: 371 GMNAPALTTPVMTKLPPY--------------EVDTERVMSKRKLRELVKTVXXXXXXXX 416
G+ +T+PVM PP E +R++ KR + EL++ +
Sbjct: 361 GLVNQKVTSPVMPSQPPVAQPGNHAKTVSAETEPSDDRILGKRSIHELLQQIDPSEKLDP 420
Query: 417 XXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRKSDSLDVRDIQMHLERNWNIRIPGFAN 476
F+ ++T F C LAKHRKSD L+ +DI +H+ERNWNIR PGF++
Sbjct: 421 EVEDILSDIAED-----FVESITTFGCSLAKHRKSDILEAKDILLHVERNWNIRPPGFSS 475
Query: 477 DEIRSTKKWNPTPSYNQMVNAINNNKTA 504
DE ++ +K T + + + AI + TA
Sbjct: 476 DEFKTFRKPLTTDIHKERLAAIKKSVTA 503
>Hs5032153 [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 161
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 391 DTERVMSKRKLRELVKTVXXXXXXXXXXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRK 450
+ +V++K+KL++LV+ V FI +V AC+LA+HRK
Sbjct: 53 ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD-----FIESVVTAACQLARHRK 107
Query: 451 SDSLDVRDIQMHLERNWNIRIPGFANDEIRSTKKWNPTPSYNQMVNAI 498
S +L+V+D+Q+HLER WN+ IPGF ++EIR KK T ++ Q + I
Sbjct: 108 SSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALI 155
>At1g17440 [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 683
Score = 68.2 bits (165), Expect = 3e-11
Identities = 47/146 (32%), Positives = 73/146 (49%), Gaps = 12/146 (8%)
Query: 338 QPNPSIPISENVTASPTVSVSYRSNRPTITGGSGMNAPALTTPVMTKLPPYEVDTERVMS 397
Q N P ++ + SVS ++P T SG P ++ T+ T +++
Sbjct: 477 QINQQQPSPRMLSHAGQKSVSLTGSQPEATQ-SGTTTPGGSSSQGTEA------TNQLLG 529
Query: 398 KRKLRELVKTVXXXXXXXXXXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRKSDSLDVR 457
KRK+++LV V FI +VT+FAC LAKHRKS L+ +
Sbjct: 530 KRKIQDLVSQVDVHAKLDPDVEDLLLEVADD-----FIDSVTSFACSLAKHRKSSVLEPK 584
Query: 458 DIQMHLERNWNIRIPGFANDEIRSTK 483
DI +HLE+N ++ IPGF++++ R TK
Sbjct: 585 DILLHLEKNLHLTIPGFSSEDKRQTK 610
>7299489 [K] KOG1142 Transcription initiation factor TFIID subunit TAF12
(also component of histone acetyltransferase SAGA)
Length = 196
Score = 66.2 bits (160), Expect = 1e-10
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 344 PISENVTASPTVSVSYRSNRPTITGGSGMNAPALTTPVMTKLPPYEVDTERVMSKRKLRE 403
P+S T + +S +S+ T + N P LT P +T+L EVDT + +
Sbjct: 59 PVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTELVR-EVDTTTQLDEDVEEL 117
Query: 404 LVKTVXXXXXXXXXXXXXXXXXXXXXXXXXFITNVTNFACKLAKHRKSDSLDVRDIQMHL 463
L++ + F+ + AKHRKS+ ++VRD+Q+H
Sbjct: 118 LLQIIDD-----------------------FVEDTVKSTSAFAKHRKSNKIEVRDVQLHF 154
Query: 464 ERNWNIRIPGFANDEIRSTKKWNPTPSYNQMVNAI 498
ER +N+ IPGF DE+R K+ T ++ Q + I
Sbjct: 155 ERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALI 189
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,571,924
Number of Sequences: 60738
Number of extensions: 782701
Number of successful extensions: 2164
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 7
length of query: 511
length of database: 30,389,216
effective HSP length: 111
effective length of query: 400
effective length of database: 23,647,298
effective search space: 9458919200
effective search space used: 9458919200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)