ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV4185   suspect: LH   F     KOG1018  Nucleotide transport and metabolism                            Cytosine deaminase FCY1 and related enzymes

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4185 1418383  1419348 322  
         (322 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.16 [F] KOG1018 Cytosine deaminase FCY1 and related enzymes     64   4e-10

>SPCC4G3.16 [F] KOG1018 Cytosine deaminase FCY1 and related enzymes
          Length = 405

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 77/291 (26%)

Query: 32  DLGILSRNESELEIDIGPHRLVTRKKKAPERDEYTFSIHQNLTSLNSNRDNNNSTTGYVI 91
           DLG+L   + ++ + IG   +                + Q+L SL+ +R     +TG V+
Sbjct: 31  DLGMLDSKQEQIALTIGNKPI---------------KVKQSLQSLHQSR----GSTGSVL 71

Query: 92  WTTSTFILKWLLYNDNATIFTRGGVKDEVDITSIFQCQQDDKLRYVLELGTGTSPMFPIV 151
           W TS  ++ WLL                    S F      K   +LELG+G S +  I+
Sbjct: 72  WKTSVKVVPWLLQQ------------------SWFMNSLTPKTS-ILELGSGISGLAGIL 112

Query: 152 FSNYVDKYVATDQKDILPRLKDNIQENQSECRRRLLKSNTIALDDLKRRTELECQIDIAL 211
            S +V  YVA+D++  L ++++N+ +N +                          +++  
Sbjct: 113 LSPFVGNYVASDKQLYLKKIRENLDQNNAS------------------------DVEVHE 148

Query: 212 LDWELFSGSKKSRNDPVLQCGPNFHLTIIAMDVIYNEYLIVPFLTTLESLFVWYTEQRVT 271
           LDW+     K    D        F   ++  D IYN +L    ++ L SL     E+   
Sbjct: 149 LDWKSTPYPKDWTFD--------FLDYVLFFDCIYNPHLNAHLVSCLASL----AERYPG 196

Query: 272 VSALIGIQLRTQDVLEMFLEEAIIERQFIVHAVDEKELNKSRFILLHVNLP 322
           +  L   +LR Q+ L  FLE   +   F V  +  +E+NK+  +    NLP
Sbjct: 197 MQCLFAQELRDQETLVDFLER--VRPYFEVDLIKMEEINKTS-VASSTNLP 244


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,172,837
Number of Sequences: 60738
Number of extensions: 832423
Number of successful extensions: 2217
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2216
Number of HSP's gapped (non-prelim): 2
length of query: 322
length of database: 30,389,216
effective HSP length: 106
effective length of query: 216
effective length of database: 23,950,988
effective search space: 5173413408
effective search space used: 5173413408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)