ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4316 good L KOG3069 Replication, recombination and repair Peroxisomal NUDIX hydrolase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4316 1470254 1469268 -329
(329 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR151c [L] KOG3069 Peroxisomal NUDIX hydrolase 312 4e-85
At1g28960 [L] KOG3069 Peroxisomal NUDIX hydrolase 84 4e-16
At5g45940 [L] KOG3069 Peroxisomal NUDIX hydrolase 68 2e-11
7292934 [L] KOG3069 Peroxisomal NUDIX hydrolase 64 3e-10
At2g33980 [L] KOG3069 Peroxisomal NUDIX hydrolase 59 1e-08
SPAC6G9.05 [L] KOG3069 Peroxisomal NUDIX hydrolase 52 1e-06
CE07570 [L] KOG3069 Peroxisomal NUDIX hydrolase 51 2e-06
>YLR151c [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 340
Score = 312 bits (800), Expect = 4e-85
Identities = 155/323 (47%), Positives = 220/323 (67%), Gaps = 9/323 (2%)
Query: 7 RMIGNLSKFSRLNLSLPTPCTWPASRRSAVLVLLFVGTRGELRVLLTKRSRKLRSFAGQV 66
++I NL ++ WP R SAV++LLF+G +GELRVLLTKRSR LRSF+G V
Sbjct: 13 QLIENLIRYKFHKTPYTRSSIWPFKRNSAVIILLFIGMKGELRVLLTKRSRTLRSFSGDV 72
Query: 67 SLPGGKADNGFESFQEVALRETEEEIGLPRDPVVLRDEYGLQIDPVCETLPHYLSKTFLS 126
S PGGKAD E+F+ VA RE EEEIGLP DP VL E+G+++D + +P YLS+TFLS
Sbjct: 73 SFPGGKADYFQETFESVARREAEEEIGLPHDPEVLHKEFGMKLDNLVMDMPCYLSRTFLS 132
Query: 127 VKPLVCFMYNSKFASENGRRFEEPLNISKIFAKLNAGETSSLFSIPLSDLICH----EHK 182
VKP+VCF+Y K ++ +++ PL+I K F KLN GETSSLFS+PL+DL+ H +
Sbjct: 133 VKPMVCFLYKDKL-EKHEDKYKVPLDIRKFFGKLNPGETSSLFSVPLNDLVIHLLPEADE 191
Query: 183 EWKGYKPEYIAREQHIYKWGGLKWPLRYYYYPMENIGESQWVKDVIDESSGDE---QFNS 239
+ K Y+ EY R+++ WGG+KW + +Y++ + N E W++ + D SS DE
Sbjct: 192 DVKSYQAEYFERKEYKLNWGGIKWLIMHYHFHVANNNEMPWLQTIEDLSSSDEDGVDGGI 251
Query: 240 ILCKNVWGLTAKILYDVARIAHGIVTGENSDSQIGHEELIYGLHEFGSQMRDRSRSDWEI 299
+++WGLT KIL+DV+ IA+G++ E ++GHE+LI GLH++G+QM+ RS+WEI
Sbjct: 252 FRFRDLWGLTCKILFDVSCIANGLM-DEKLKGELGHEDLIVGLHDYGNQMQPNGRSEWEI 310
Query: 300 GMIENSRHFKYADVIPSFYLDHV 322
GMI R+ KY+DVIP +Y+ H+
Sbjct: 311 GMINGDRNLKYSDVIPEYYMKHL 333
>At1g28960 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 321
Score = 83.6 bits (205), Expect = 4e-16
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 62/230 (26%)
Query: 32 RRSAVLVLLFVGTRGELRVLLTKRSRKLRSFAGQVSLPGGKADNGFESFQEVALRETEEE 91
+R+AVL+ LF G G+LRV+LTKRS KL + +G+VSLPGGKA+ + A RE EEE
Sbjct: 77 KRAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEE 136
Query: 92 IGLPRDPVVLRDEYGLQIDPVCETLPHYLSKTFLSVKPLVCFMYNSKFASENGRRFEEPL 151
IGL DP ++ V +L +LSK L V P++ + +
Sbjct: 137 IGL--DPSLV---------DVVTSLEPFLSKHLLRVIPVIGILRDK-------------- 171
Query: 152 NISKIFAKLNAGETSSLFSIPLSDLICHEHKEWKGYKPEYIAREQHIYKWGGLKWPLRYY 211
+K N GE ++F PL + E+ R +W G K+ + Y+
Sbjct: 172 --NKFNPIPNPGEVEAVFDAPLEMFLKDEN------------RRSEEREWMGEKYLIHYF 217
Query: 212 YYPMENIGESQWVKDVIDESSGDEQFNSILCKNVWGLTAKILYDVARIAH 261
D +GD+ + +WGLTA IL A + +
Sbjct: 218 -----------------DYRTGDKDY------MIWGLTAGILIRAASVTY 244
>At5g45940 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 222
Score = 68.2 bits (165), Expect = 2e-11
Identities = 68/235 (28%), Positives = 104/235 (43%), Gaps = 65/235 (27%)
Query: 31 SRRSAVLVLLFVGTR---GELRVLLTKRSRKLRSFAGQVSLPGGKADNGFESFQEVALRE 87
++ SAVLV L+ R ELRV+LTKRS L S G+V+LPGGK D + ALRE
Sbjct: 31 AKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATALRE 90
Query: 88 TEEEIGLPRDPVVLRDEYGLQIDPVCETLPHYLSKTFLSVKPLVCFMYNSKFASENGRRF 147
EEIGL DP ++ + L +++K +SV P++ F+++
Sbjct: 91 AREEIGL--DPSLV---------TIISVLEPFVNKKGMSVAPVIGFLHD----------- 128
Query: 148 EEPLNISKIFAKL-NAGETSSLFSIPLSDLICHEHKEWKGYKPEYIAREQHIYKWGGLKW 206
K F +L N E +F +PL + ++ + + E G ++
Sbjct: 129 ------KKAFKQLPNPAEVEEIFDVPLEMFLKDRNRRAEEREHE------------GERY 170
Query: 207 PLRYYYYPMENIGESQWVKDVIDESSGDEQFNSILCKNVWGLTAKILYDVARIAH 261
L+Y+ Y E D++ + I +W LTA IL VA I +
Sbjct: 171 LLQYFDYYSE-----------------DKERSFI----IWALTAGILIRVASIVY 204
>7292934 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 283
Score = 63.9 bits (154), Expect = 3e-10
Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 21 SLPTPCTWPASRR----SAVLVLLFV--GTRGELRVLLTKRSRKLRSFAGQVSLPGGKAD 74
+ P P SRR SAVL+ L GT E+ +L T+RSR LRS + Q+S PGG+ D
Sbjct: 67 AFPRPKALTPSRREKQTSAVLIALCQERGTN-EISLLYTRRSRHLRSHSFQISFPGGRRD 125
Query: 75 NGFESFQEVALRETEEEIGLPR 96
+ S+ + ALRETEEEIGLPR
Sbjct: 126 DHDSSYVDCALRETEEEIGLPR 147
>At2g33980 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 187
Score = 58.9 bits (141), Expect = 1e-08
Identities = 35/72 (48%), Positives = 45/72 (61%), Gaps = 9/72 (12%)
Query: 32 RRSAVLVLLFVGTRGELRVLLTKRSRKLRSF---------AGQVSLPGGKADNGFESFQE 82
+++AVL+ LF G G+LRV+LTKRS L + AG+VSLPGGKA+ +
Sbjct: 74 KKAAVLICLFEGDDGDLRVILTKRSSTLSTHSVQTLNKIVAGEVSLPGGKAEEHDKDDGI 133
Query: 83 VALRETEEEIGL 94
A RE EEEIGL
Sbjct: 134 TATREAEEEIGL 145
>SPAC6G9.05 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 285
Score = 52.0 bits (123), Expect = 1e-06
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 21 SLPTPCTWPASRRSAVLVLLFVGTRGELRVLLTKRSRKLRSFAGQVSLPGGKADNGFESF 80
+LP T +R ++VL+ L V T +LLT+RS LRS AGQ+ PGG+ + S
Sbjct: 104 TLPLKPTNQPTRFASVLMPL-VNTSQGASLLLTQRSPNLRSHAGQMCFPGGRVEPSDGSH 162
Query: 81 QEVALRETEEEIGLPRDPVVLRDEYGLQIDPVCETLPHYLSKTFLSVKPLVCFMYNSKFA 140
ALRET EEIG LP++ T+L+ P + F + K
Sbjct: 163 YYAALRETYEEIGF---------------------LPNFF--TYLTTFPPL-FTRDEKTE 198
Query: 141 SENGRRFEEPLNISKIFAKLNAGETSSLFSIPLSDLICHEHKE 183
F ++ L GE LF +PL+ + +H++
Sbjct: 199 IRAYLAF----SVQTSLPSLGTGEVKDLFYVPLTSFLNPKHQK 237
>CE07570 [L] KOG3069 Peroxisomal NUDIX hydrolase
Length = 188
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 37 LVLLFVGTRGELRVLLTKRSRKLRSFAGQVSLPGGKADNGFESFQEVALRETEEEIGLPR 96
+++ V G VLLTKRS LRS G+V PGG+ D G E+ E ALRET EEIG+
Sbjct: 3 VLIPLVTVDGRDSVLLTKRSIHLRSHRGEVCFPGGRMDPG-ETTTETALRETFEEIGVNA 61
Query: 97 DPV--------VLRDEYGLQIDPV 112
+ V V+R + + P+
Sbjct: 62 ESVEIWGHLKSVIRRQADFNVTPI 85
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,403,159
Number of Sequences: 60738
Number of extensions: 903617
Number of successful extensions: 1942
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1927
Number of HSP's gapped (non-prelim): 10
length of query: 329
length of database: 30,389,216
effective HSP length: 107
effective length of query: 222
effective length of database: 23,890,250
effective search space: 5303635500
effective search space used: 5303635500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)