ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4326 suspect: LH S KOG2722 Function unknown Predicted membrane protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4326 1473182 1471347 -612 
         (612 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65980 [S] KOG2722 Predicted membrane protein                       57   6e-08
At2g17500 [S] KOG2722 Predicted membrane protein                       54   9e-07

>At5g65980 [S] KOG2722 Predicted membrane protein
          Length = 395

 Score = 57.4 bits (137), Expect = 6e-08
 Identities = 47/182 (25%), Positives = 86/182 (46%), Gaps = 31/182 (17%)

Query: 424 LEYVLINFFRPASLGALLGIICSMIPWVQALFVNTYVHVHNAPDGLPVLNFIMDATEYIG 483
           L  +L   F P ++GA+LG +     W++ L +       NAP     L  I D+ + +G
Sbjct: 226 LHQILEELFAPPTIGAILGFVFGATNWLRNLIIG-----ENAP-----LRVIQDSVKLLG 275

Query: 484 NACVPLGLLLLGGTIAR-LEVKSIPQGFIFVAIAMATVRLAVIPIIGVLWTNKIFNMNWI 542
              +P   L+LGG + + L   ++ +    V + +  VR  ++P++GV       N+ ++
Sbjct: 276 EGTIPCITLILGGNLIQGLRSSAVKKS---VIVGVIIVRYILLPVVGVGVVQLAGNLGYL 332

Query: 543 ESD-IAKLVIILTFAMP-----SATAQIYFTAFFTPMEGPHLQMDCLSVLFVVQYIFLFI 596
             D + + V++L FA+P     S  AQ++  A          Q +C SV+F+  Y+   +
Sbjct: 333 PPDPLFRYVLMLQFALPPAMNISTMAQLFDVA----------QDEC-SVIFLWTYLVASL 381

Query: 597 TL 598
            L
Sbjct: 382 AL 383


>At2g17500 [S] KOG2722 Predicted membrane protein
          Length = 396

 Score = 53.5 bits (127), Expect = 9e-07
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 28/224 (12%)

Query: 384 DDETFAVPESDTN-----SMHLVKTATNKSLR--KMDTWFQRHSLGQLEYVLINFFRPAS 436
           + E  A+  S+++       HL+    +K  +  K  T F R  +  L  +L     P +
Sbjct: 180 ESEKIAIKSSNSDLEADHKTHLLGAPEDKENKVVKEKTGFWRKGVDFLHEILEELLAPPT 239

Query: 437 LGALLGIICSMIPWVQALFVNTYVHVHNAPDGLPVLNFIMDATEYIGNACVPLGLLLLGG 496
           LGA++G I   + W++ L +       +AP     L  +    + +G+  +P   ++LGG
Sbjct: 240 LGAIIGFIFGAVRWLRNLIIG-----DDAP-----LRIVQSTAKLLGDGTIPCMTIILGG 289

Query: 497 TIAR-LEVKSIPQGFIFVAIAMATVRLAVIPIIGVLWTNKIFNMNWIESD-IAKLVIILT 554
            + + L   ++      V + +  VR   +PIIG+       N+ ++ +D + + V++L 
Sbjct: 290 NLIQGLRSSAVKP---MVVLGIVCVRYIAMPIIGIGIVLTAANLGFLPADPLFQYVLMLQ 346

Query: 555 FAMPSATAQIYFTAFFTPMEGPHLQMDCLSVLFVVQYIFLFITL 598
           F +P A      T  +      ++  D  SVL +  Y+   + L
Sbjct: 347 FTLPPAMNIGTMTQLY------NVAQDECSVLMLWTYLVAILAL 384


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,207,856
Number of Sequences: 60738
Number of extensions: 1306967
Number of successful extensions: 3982
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3978
Number of HSP's gapped (non-prelim): 4
length of query: 612
length of database: 30,389,216
effective HSP length: 112
effective length of query: 500
effective length of database: 23,586,560
effective search space: 11793280000
effective search space used: 11793280000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)