ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV4419.1   suspect: LH  L     KOG2851   Replication, recombination and repair                          Eukaryotic-type DNA primase, catalytic (small) subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4419.1 1503224  1503391 56   
         (56 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41880 [L] KOG2851 Eukaryotic-type DNA primase catalytic (sma...    27   4.0  
SPAC6B12.10c [L] KOG2851 Eukaryotic-type DNA primase catalytic (...    27   6.9  

>At5g41880 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
          Length = 407

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)

Query: 23  VISTTWHENYSF---LWIFKGRRG 43
           VI T+  E++ F   LW+F GRRG
Sbjct: 151 VIDTSLREDFGFKHILWVFSGRRG 174


>SPAC6B12.10c [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
          Length = 454

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)

Query: 23  VISTTWHENYSF---LWIFKGRRG 43
           V+   +HE++ F   LW++ GRRG
Sbjct: 163 VLDICFHEDFGFKHILWVYSGRRG 186


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.325    0.139    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,448
Number of Sequences: 60738
Number of extensions: 90376
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 30,389,216
effective HSP length: 32
effective length of query: 24
effective length of database: 28,445,600
effective search space: 682694400
effective search space used: 682694400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)