ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV4472   suspect: LH  GOU   KOG1442   Carbohydrate transport and metabolism                          GDP-fucose transporter
r_klactIV4472   suspect: LH  GOU   KOG1442   Intracellular trafficking, secretion, and vesicular transport  GDP-fucose transporter
r_klactIV4472   suspect: LH  GOU   KOG1442   Posttranslational modification, protein turnover, chaperones   GDP-fucose transporter

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4472 gi|132471|sp|P09806|RF4_KLULA 
         (204 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE05478 [GOU] KOG1442 GDP-fucose transporter                           28   6.6  
Hs7705433 [JK] KOG3677 RNA polymerase I-associated factor - PAF67      28   8.7  

>CE05478 [GOU] KOG1442 GDP-fucose transporter
          Length = 416

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 100 ILSSISAIYIMSNKVCDFTFKYLLSGV---------WYPNVPTKETCIYLSEKDPRYSL 149
           +++++SA ++ S  +  F  KYLLS V         WY  + T   C++LS+    Y L
Sbjct: 83  VITAVSAYWVFSIGLV-FLNKYLLSSVQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGL 140


>Hs7705433 [JK] KOG3677 RNA polymerase I-associated factor - PAF67
          Length = 564

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 10  VRKKFRRHSKYRTISQFQLKICLELENNLSDYFKA 44
           V  ++ RHS Y+ +  F L   L L + L DY++A
Sbjct: 256 VAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQA 290


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.327    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,697,348
Number of Sequences: 60738
Number of extensions: 457864
Number of successful extensions: 1141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 2
length of query: 204
length of database: 30,389,216
effective HSP length: 101
effective length of query: 103
effective length of database: 24,254,678
effective search space: 2498231834
effective search space used: 2498231834
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)