ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4484 suspect: LH J KOG3933 Translation, ribosomal structure and biogenesis Mitochondrial ribosomal protein S28
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4484 1524401 1523493 -303
(303 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR175c [J] KOG3933 Mitochondrial ribosomal protein S28 306 2e-83
SPAC2F7.15 [J] KOG3933 Mitochondrial ribosomal protein S28 68 2e-11
>YDR175c [J] KOG3933 Mitochondrial ribosomal protein S28
Length = 319
Score = 306 bits (785), Expect = 2e-83
Identities = 164/305 (53%), Positives = 202/305 (65%), Gaps = 17/305 (5%)
Query: 6 SVQRTAFFCSRRLNSTVTKEVATI------SSTLYKDPSKWIGLDSKDIITLHNERKARL 59
S Q+ SR LNS E T+ S+ LY P KW GL + I+ L+ ER ARL
Sbjct: 17 STQKRVLTMSRCLNSDAGNEAKTVREGPAFSADLYMHPEKWKGLPPQRILELYWERMARL 76
Query: 60 GPLYKPCEEELKALLPTAEASGIPAKLFKEYYHKTPEEVEAEMGIARGLDEHVNLDQ--- 116
G YKP ++EL ALL T+E S +P K+ YH+ E G +VN D
Sbjct: 77 GSEYKPNKDELNALLTTSEYSNVPVNDIKKLYHR------GEQGAIDIKGGNVNRDNSLR 130
Query: 117 -YQFDDLPSQSQILVHQHREQRFYNRLAAFELPLLAQYRQEYKRPSTKTHPVAYRYTTYL 175
+ FD+LPSQ+Q LV QHREQRFYNRLAA+ELPLLAQYRQEYKRPS ++HPV YRYT+Y+
Sbjct: 131 PFMFDELPSQAQELVAQHREQRFYNRLAAYELPLLAQYRQEYKRPSPESHPVTYRYTSYV 190
Query: 176 GEEHPNSRKVVLSVKTSDLGLEQRELHKLRLLAKTRYDSTTDTLRMSSDRYEEPAQNAKY 235
GEEHPNSRKVVLSVKT +LGLE++ LHK R+LA++RYD TTD +MSSD++E +QNA+Y
Sbjct: 191 GEEHPNSRKVVLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARY 250
Query: 236 LNSI-XXXXXXXXXXXXXXXXXVPLDKRHIIARQLRKKKRGYEFPEEWKRPQDAPRKTVD 294
L+ I VPLD RH IA+ LRKKKR YEFPE WKRP+DAP+K D
Sbjct: 251 LHDILQRLLAESKDLTEDDFSDVPLDTRHTIAKSLRKKKRDYEFPEHWKRPEDAPKKKFD 310
Query: 295 LVELL 299
+V+ L
Sbjct: 311 IVDQL 315
>SPAC2F7.15 [J] KOG3933 Mitochondrial ribosomal protein S28
Length = 258
Score = 67.8 bits (164), Expect = 2e-11
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 107 GLDEHVNLDQYQFDDLPSQSQIL---VHQHREQRFYNRLAAFELPLLAQYRQEYKRPSTK 163
G++ H + DD + + + +H R R AA+ELP L Y Q +K+P+
Sbjct: 51 GIEPHDEKELKTIDDNVHSNNLSWQKIQEHEVIRELYRKAAYELPGLTPYTQSFKKPAD- 109
Query: 164 THPVAYRYTTYLGEEHPNSRKVVLSVKTSDLGL-EQRELHKLRLLAKTRYDSTTDTLRMS 222
+ + + + KVV++ K +++ L E+++ H LRLL RY+ D +R+S
Sbjct: 110 SQIFRFESDVQMSSFEKMNPKVVVTFKVTNIPLLEEKQRHVLRLLVGPRYNPEEDLVRIS 169
Query: 223 SDRYEEPAQNAKYLNSIXXXXXXXXXXXXXXXXXVPLDKRHIIARQLRKKKRGYEFPEEW 282
SD+Y QN +L I VPL+ H + KK P+EW
Sbjct: 170 SDKYSSALQNKYHLIKILTSLIEESKRNAEKFSHVPLNTGH-----WKYKKCDKRMPQEW 224
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,273,031
Number of Sequences: 60738
Number of extensions: 701973
Number of successful extensions: 1795
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 2
length of query: 303
length of database: 30,389,216
effective HSP length: 106
effective length of query: 197
effective length of database: 23,950,988
effective search space: 4718344636
effective search space used: 4718344636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)