ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4493 good CU KOG4097 Energy production and conversion Succinate dehydrogenase membrane anchor subunit and related proteins
r_klactIV4493 good CU KOG4097 Intracellular trafficking, secretion, and vesicular transport Succinate dehydrogenase membrane anchor subunit and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4493 1529251 1529742 164
(164 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR164w [CU] KOG4097 Succinate dehydrogenase membrane anchor sub... 166 2e-41
YDR178w [CU] KOG4097 Succinate dehydrogenase membrane anchor sub... 164 4e-41
SPBP23A10.16 [CU] KOG4097 Succinate dehydrogenase membrane ancho... 105 2e-23
YOR297c [CU] KOG4097 Succinate dehydrogenase membrane anchor sub... 81 6e-16
>YLR164w [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
related proteins
Length = 168
Score = 166 bits (419), Expect = 2e-41
Identities = 79/157 (50%), Positives = 100/157 (63%)
Query: 8 LTQARAFQTTARKNLTIPFLSTLPQAPGGVKGNVNDAYVPPAPEKLHGSLHWDFERVLAI 67
L + RAF T+ ++ TIPFL +PQ PGGV G ND+ P + GS HW ER L++
Sbjct: 10 LCRIRAFHTSIARSFTIPFLPKIPQKPGGVSGTANDSSYMPPESRAQGSYHWIVERGLSL 69
Query: 68 SLIPLVTVPLAATGSISTVLDTALASVLLGHCYVGFQSCIIDYIPSRVYGKNHTYAMYXX 127
+++PL+ VPL TG IST DT L+ VLLGHC++GFQSCIIDYI RVYGK H YAMY
Sbjct: 70 AVLPLIAVPLVTTGPISTFTDTFLSLVLLGHCHIGFQSCIIDYISERVYGKVHHYAMYLL 129
Query: 128 XXXXXXXXXXIYHMETKEGGLIGVLKNIWSKPSTEKK 164
IY +E++E GLI LK++W EKK
Sbjct: 130 SLGSFLSFVGIYKLESQEAGLIASLKSLWDNKPVEKK 166
>YDR178w [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
related proteins
Length = 181
Score = 164 bits (416), Expect = 4e-41
Identities = 77/152 (50%), Positives = 102/152 (66%), Gaps = 2/152 (1%)
Query: 12 RAFQTTARKNLTIPFLSTLPQAPGGVKGNVNDAYVPPAPEKLHGSLHWDFERVLAISLIP 71
RAFQ+TA+K+LTIPFL LPQ PGGV+G NDAYVPP KL GS HW E++ A+S++P
Sbjct: 22 RAFQSTAKKSLTIPFLPVLPQKPGGVRGTPNDAYVPPPENKLEGSYHWYMEKIFALSVVP 81
Query: 72 LVTVPLAATGSISTVLDTALASVLLGHCYVGFQSCIIDYIPSRVYGKNHTYAMYXXXXXX 131
L T + TG +ST D+ + +LLG+CY+ F SCI DYI RVYG H YAMY
Sbjct: 82 LATTAMLTTGPLSTAADSFFSVMLLGYCYMEFNSCITDYISERVYGVWHKYAMYMLGLGS 141
Query: 132 XXXXXXIYHMETKEGGLIGVLKNIWSKPSTEK 163
IY +ET+ G++G++K++W S+EK
Sbjct: 142 AVSLFGIYKLETENDGVVGLVKSLWD--SSEK 171
>SPBP23A10.16 [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
related proteins
Length = 186
Score = 105 bits (263), Expect = 2e-23
Identities = 55/149 (36%), Positives = 81/149 (53%), Gaps = 8/149 (5%)
Query: 8 LTQARAFQTTARKNLTIPFLSTLPQAPGGVKGNVNDAYVPPAPEKLHGSLHWDFERVLAI 67
L ++F TT+ + P P +KG VNDA V P KLHGS HWDFER++AI
Sbjct: 44 LFAVKSFSTTSVAKI-------FPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDFERIIAI 96
Query: 68 SLIPLVTVPLAATGSISTVLDTALASVLLGHCYVGFQSCIIDYIPSRVYGKNHTYAMYXX 127
+++P V +PL TG+ ++D ALA L+ H ++GF+SC+IDY P+R + K +
Sbjct: 97 AMVPQVMIPL-FTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKKLSPLMHWIL 155
Query: 128 XXXXXXXXXXIYHMETKEGGLIGVLKNIW 156
+Y T + GL +K +W
Sbjct: 156 RGCTVLTLIGVYEFNTNDIGLTEGIKKLW 184
>YOR297c [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
related proteins
Length = 192
Score = 81.3 bits (199), Expect = 6e-16
Identities = 42/117 (35%), Positives = 63/117 (52%), Gaps = 3/117 (2%)
Query: 45 YVPPAPEKLHGSLHWDFERVLAISLIPLVTVPLAAT---GSISTVLDTALASVLLGHCYV 101
+ PP + S D+ER+ +LIPL VP A+ G I+ +LD +L+S+ L +
Sbjct: 65 FKPPEFSQFKDSYQKDYERIAKYTLIPLTMVPFYASFTGGVINPLLDASLSSIFLIYLQY 124
Query: 102 GFQSCIIDYIPSRVYGKNHTYAMYXXXXXXXXXXXXIYHMETKEGGLIGVLKNIWSK 158
GF SCIIDYIP Y + H A+Y IY +ETK G + ++K +W++
Sbjct: 125 GFTSCIIDYIPKGKYPRWHKLALYCLYGGSMLSLYGIYELETKNNGFVDLVKKLWNE 181
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,149,589
Number of Sequences: 60738
Number of extensions: 333364
Number of successful extensions: 600
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 30,389,216
effective HSP length: 98
effective length of query: 66
effective length of database: 24,436,892
effective search space: 1612834872
effective search space used: 1612834872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)