ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV4503   suspect: LH   A     KOG1919  RNA processing and modification                                RNA pseudouridylate synthases

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4503 1533227 1532331 -299 
         (299 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR165c [A] KOG1919 RNA pseudouridylate synthases                     142   8e-34

>YLR165c [A] KOG1919 RNA pseudouridylate synthases
          Length = 254

 Score =  142 bits (357), Expect = 8e-34
 Identities = 100/247 (40%), Positives = 131/247 (52%), Gaps = 20/247 (8%)

Query: 42  LWRDKHHVIFNKPPLALSQLPDKRTWYNTH-DYDPPVLLDIVQSSSGSILKDGTYEPSYY 100
           ++ + H+ I NKPP   SQ PD RTW  TH + DP  LL+  ++    I           
Sbjct: 10  IFENTHYFIVNKPPGIPSQPPDCRTWGRTHPNLDPTPLLERFKA----IYYSHREVELCR 65

Query: 101 PIHRIDTPVSGGIVYAVNKQSAQQFSRNLRYGGNKGFSLTRKYVAKVGKSKTAN-----E 155
            +HR+D  V+GG++ A  K  + +FSR L+ GGN G+ L RKYVA V  S   N     E
Sbjct: 66  TVHRLDHCVTGGMLIAKTKDGSVKFSRFLQKGGNNGYKLQRKYVAIVESSGRFNKPNNYE 125

Query: 156 CKEG-----LIKWNGA-ITYFQRVDNEHLILQLVTGKKHQIRKLTQQVLDSPIYNDLKYG 209
            K G     LI   G  IT F+ VD   ++LQLVTGKKHQIR    Q+L+ PI ND ++G
Sbjct: 126 IKYGPKYNFLISHGGREITKFKEVDENCIVLQLVTGKKHQIRNHVSQILNQPILNDKRHG 185

Query: 210 GKKVFDSDF--QIALHSAYIRTKIGFNIHEQIIPVP-DGFRMIWGES-VDQNGNFNEDIT 265
               F   F  QIALHSA I TKIG      +IP+  +    +W    V++ G F   I 
Sbjct: 186 STVNFPELFNDQIALHSACIITKIGLQTKTHLIPMEHNNTGQLWSRKYVNEEGEFTLPIK 245

Query: 266 RVLKEDW 272
            VL E+W
Sbjct: 246 EVLLENW 252


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,272,056
Number of Sequences: 60738
Number of extensions: 857034
Number of successful extensions: 1842
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 1
length of query: 299
length of database: 30,389,216
effective HSP length: 106
effective length of query: 193
effective length of database: 23,950,988
effective search space: 4622540684
effective search space used: 4622540684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)