ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4561 good F KOG0833 Nucleotide transport and metabolism Cytidine deaminase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4561 1553985 1554425 147
(147 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR245c [F] KOG0833 Cytidine deaminase 144 4e-35
Hs11386157 [F] KOG0833 Cytidine deaminase 123 1e-28
SPAC1556.04c [F] KOG0833 Cytidine deaminase 107 4e-24
CE06962 [F] KOG0833 Cytidine deaminase 93 1e-19
7297361 [F] KOG0833 Cytidine deaminase 91 7e-19
CE10792 [F] KOG0833 Cytidine deaminase 88 5e-18
7297363 [F] KOG0833 Cytidine deaminase 76 1e-14
7297362 [F] KOG0833 Cytidine deaminase 76 2e-14
At4g29610 [F] KOG0833 Cytidine deaminase 57 7e-09
At4g29630 [F] KOG0833 Cytidine deaminase 48 4e-06
>YLR245c [F] KOG0833 Cytidine deaminase
Length = 142
Score = 144 bits (363), Expect = 4e-35
Identities = 68/141 (48%), Positives = 91/141 (64%)
Query: 6 KLDGIEPTQVDRAILESQKAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGATIC 65
K+ GIE Q++ + KA SYSPYS FRVGC ILT + TG+NVENA+Y IC
Sbjct: 2 KVGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCIC 61
Query: 66 AERAAIVKAVTSSHRADWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMTNCDTS 125
AER+A+++ + + HR+ W C+ I D D + PCG+CRQ I EF +D PI+M N S
Sbjct: 62 AERSAMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGS 121
Query: 126 VKKIMTLNELLPESFGPDHFH 146
K+MT+ ELLP +FGP H +
Sbjct: 122 RSKVMTMGELLPMAFGPSHLN 142
>Hs11386157 [F] KOG0833 Cytidine deaminase
Length = 146
Score = 123 bits (308), Expect = 1e-28
Identities = 64/138 (46%), Positives = 90/138 (64%), Gaps = 3/138 (2%)
Query: 10 IEPTQVDRAILESQKAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGATICAERA 69
++P V + ++ SQ+AK +Y PYS F VG +LT++G G N+ENA Y ICAER
Sbjct: 10 LKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 69
Query: 70 AIVKAVTSSHRADWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMTNCDTSVKKI 129
AI KAV+ ++ D+ +AI SDM+D++I PCG CRQ +REFG + P+ MT D +
Sbjct: 70 AIQKAVSEGYK-DFRAIAIASDMQDDFISPCGACRQVMREFG-TNWPVYMTKPD-GTYIV 126
Query: 130 MTLNELLPESFGPDHFHR 147
MT+ ELLP SFGP+ +
Sbjct: 127 MTVQELLPSSFGPEDLQK 144
>SPAC1556.04c [F] KOG0833 Cytidine deaminase
Length = 133
Score = 107 bits (268), Expect = 4e-24
Identities = 61/135 (45%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 10 IEPTQVDRAILESQKAKSGSYSPYSKFRVGCCILTKD-GTYITGSNVENATYGATICAER 68
+E +++ E +K+ SY PYS F VG C+++ D TYI G+NVENA+YG ICAER
Sbjct: 1 MEKEDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAER 60
Query: 69 AAIVKAVTSSHRADWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMTNCDTSVKK 128
AI KAV+ + +AI + PCGICRQ IREF K D+ + M + D
Sbjct: 61 VAITKAVSMGYTK---FMAIGVMSAKGRVTPCGICRQVIREFSK-DINVYMFH-DDGGYD 115
Query: 129 IMTLNELLPESFGPD 143
+ T+ ELLP+SFGPD
Sbjct: 116 MKTIEELLPDSFGPD 130
>CE06962 [F] KOG0833 Cytidine deaminase
Length = 158
Score = 92.8 bits (229), Expect = 1e-19
Identities = 58/140 (41%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 4 KSKLDGIEPTQVDRAILESQKAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGAT 63
K+ L E VD+AI A +Y YS F+VG ++ DG I G+N ENA+YGAT
Sbjct: 5 KANLTEFEQQLVDKAI----GAMENAYCKYSNFKVGAALVCDDGEIIIGANHENASYGAT 60
Query: 64 ICAERAAIVKAVTSSHRA-DWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMTNC 122
ICAER+AIV A+T HR ++ VA + PCG+CRQ + EFG D +I+ +
Sbjct: 61 ICAERSAIVTALTKGHRKFKYIVVATELEAP---CSPCGVCRQVLIEFG--DYKVILGSS 115
Query: 123 DTSVKKIMTLNELLPESFGP 142
+ T ELLP +F P
Sbjct: 116 TSDQIIETTTYELLPYAFTP 135
>7297361 [F] KOG0833 Cytidine deaminase
Length = 158
Score = 90.5 bits (223), Expect = 7e-19
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Query: 6 KLDGIEPTQVDRAILESQKAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGATIC 65
+ ++P+ + IL + +A+ +Y PYS F VG + T DGT +G N+EN Y IC
Sbjct: 17 EFQSLDPS-IQEIILAATEARKQAYCPYSNFAVGAALRTSDGTIYSGCNIENGAYATCIC 75
Query: 66 AERAAIVKAVTSSHRADWVCVAINSDMRDNYIPPCGICRQTIREF-GKEDLPIIMTNCDT 124
AER A VKA++ R D+V A+ + + + PCG+CRQ + EF +D+P+
Sbjct: 76 AERTAAVKAISEGKR-DFVACAVVAQQDNGFTTPCGVCRQFLSEFVNGKDIPLYAAKPTN 134
Query: 125 SVKKIM--TLNELLPESF 140
+++ ++ +LLP F
Sbjct: 135 LPLRVLCTSVLQLLPNGF 152
>CE10792 [F] KOG0833 Cytidine deaminase
Length = 166
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 22 SQKAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGATICAERAAIVKAVTSSHRA 81
++ A ++ PYSKF VG +LT+ G + G NVENA+YG TICAER+AIV AV+ +
Sbjct: 19 ARAAMKRAHCPYSKFPVGAALLTESGEIVQGCNVENASYGGTICAERSAIVSAVSQGY-T 77
Query: 82 DWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMTNCDTSVKKIMTLNELLPESFG 141
+ +A+ +++ + PCG+CRQ + EFG D +++ + I + LLP +F
Sbjct: 78 KFRAIAVVTELSEP-ASPCGLCRQFLVEFG--DYKVVVGTASNNKILITSTRALLPFAFT 134
Query: 142 PD 143
P+
Sbjct: 135 PE 136
>7297363 [F] KOG0833 Cytidine deaminase
Length = 234
Score = 76.3 bits (186), Expect = 1e-14
Identities = 46/138 (33%), Positives = 69/138 (49%), Gaps = 15/138 (10%)
Query: 17 RAILESQ-KAKSGSYSPYSKFRVGCCILTKDGTYITGSNVENATYGATICAERAAIVKAV 75
R +LE+ A+ +Y+PYSKF+VG K G G N+EN + CAER A+ K +
Sbjct: 94 RELLEAALSARRCAYAPYSKFKVGAAFRAKCGRIYAGCNIENVAFTPGNCAERCALAKGI 153
Query: 76 TSSHRADWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPIIMT--------NCDTSVK 127
+ + + A+ + D + PCG+CRQ I EF + D+PI + NC S+
Sbjct: 154 SEGEK-KYTAGAVVAYHPDGFTTPCGVCRQFILEFIQNDIPIYIAKAPPPEQENCIPSIP 212
Query: 128 K-----IMTLNELLPESF 140
+ + LLP SF
Sbjct: 213 DEAEVLVTSAYHLLPHSF 230
>7297362 [F] KOG0833 Cytidine deaminase
Length = 170
Score = 75.9 bits (185), Expect = 2e-14
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 15 VDRAILESQKAKSGSYSPYSKFRVGCCILTK-DGTYITGSNVENATYGATICAERAAIVK 73
V + + + + +Y PYS F+VG K DG TG NVENA + CAER AI K
Sbjct: 27 VQELLTAAFQVRQRAYVPYSGFKVGAAFRAKVDGKIFTGCNVENAAFTPGSCAERTAIAK 86
Query: 74 AVTSSHRADWVCVAINSDMRDNYIPPCGICRQTIREFGKEDLPI 117
AV S +++ A+ + + + PCG+CRQ IREF D+PI
Sbjct: 87 AV-SEGATEFLAGAVLAYEPNVFTTPCGVCRQFIREFANADIPI 129
>At4g29610 [F] KOG0833 Cytidine deaminase
Length = 293
Score = 57.4 bits (137), Expect = 7e-09
Identities = 40/124 (32%), Positives = 61/124 (48%), Gaps = 7/124 (5%)
Query: 24 KAKSGSYSPYSKFRVGCCILTKDGTYITGSNVE--NATYGATICAERAAIVK-AVTSSHR 80
KA S + +P S F+VG LT G G NVE N TI AE+ + A+ S +
Sbjct: 27 KAMSLARAPVSTFKVGAVGLTSSGEVFLGVNVEFPNLPLHHTIHAEQFLVTNLALNSMKK 86
Query: 81 ADWVCVAINSDMRDNYIPPCGICRQTIREF-GKEDLPIIMTNCDTSVKKIMTLNELLPES 139
+ V++ + + PCG CRQ +E ++ I++ + + M+L L+PE
Sbjct: 87 LTHIAVSVTGTI---FGAPCGHCRQFYQEMRNAPEIEILIKRPKDGIDEFMSLKSLMPER 143
Query: 140 FGPD 143
FGPD
Sbjct: 144 FGPD 147
>At4g29630 [F] KOG0833 Cytidine deaminase
Length = 223
Score = 48.1 bits (113), Expect = 4e-06
Identities = 38/124 (30%), Positives = 60/124 (47%), Gaps = 5/124 (4%)
Query: 24 KAKSGSYSPYSKFRVGCCILTKDGTYITGSNVE--NATYGATICAERAAIVK-AVTSSHR 80
KA S + +P SK++VG + G G NVE +I AE+ + A+ S
Sbjct: 32 KAMSLALAPISKYKVGAVGRARSGRIYLGVNVELPGLPLHHSIHAEQFLVTNLALNSEKG 91
Query: 81 ADWVCVAINSDMRDNYIPPCGICRQTIREFGKE-DLPIIMTNCDTSVKKIMTLNELLPES 139
+ V I++D D + PCG CRQ + E K ++ I++ + + +L LLP+
Sbjct: 92 LHLLAVTISTDGND-FGAPCGNCRQFLMEISKALNIKILLKSKYEAEGSFKSLRLLLPDR 150
Query: 140 FGPD 143
F PD
Sbjct: 151 FSPD 154
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,819,032
Number of Sequences: 60738
Number of extensions: 323138
Number of successful extensions: 808
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 12
length of query: 147
length of database: 30,389,216
effective HSP length: 96
effective length of query: 51
effective length of database: 24,558,368
effective search space: 1252476768
effective search space used: 1252476768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)