ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4615 check: MH A KOG0342 RNA processing and modification ATP-dependent RNA helicase pitchoune
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4615 1576217 1574163 -685
(685 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 472 e-133
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 203 8e-52
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 196 1e-49
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 194 5e-49
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 194 5e-49
SPAC1093.05 [A] KOG0343 RNA Helicase 189 9e-48
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 188 2e-47
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 184 3e-46
7299006 [A] KOG0345 ATP-dependent RNA helicase 183 9e-46
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 181 3e-45
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 181 4e-45
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 179 1e-44
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 179 2e-44
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 177 6e-44
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 176 8e-44
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 174 3e-43
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 174 4e-43
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 172 1e-42
YJL033w [A] KOG0343 RNA Helicase 172 2e-42
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 170 8e-42
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 169 1e-41
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 166 1e-40
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 166 1e-40
CE27553 [A] KOG0337 ATP-dependent RNA helicase 165 2e-40
7303950 [A] KOG0340 ATP-dependent RNA helicase 165 2e-40
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 164 3e-40
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 164 5e-40
7298204 [A] KOG0335 ATP-dependent RNA helicase 164 5e-40
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 162 1e-39
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 162 1e-39
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 162 1e-39
7299061 [A] KOG0335 ATP-dependent RNA helicase 162 1e-39
7293348 [A] KOG0348 ATP-dependent RNA helicase 162 1e-39
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 161 4e-39
YGL078c [A] KOG0331 ATP-dependent RNA helicase 160 5e-39
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 160 6e-39
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 160 8e-39
Hs13514831 [A] KOG0343 RNA Helicase 159 1e-38
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 159 1e-38
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 159 1e-38
YPL119c [A] KOG0335 ATP-dependent RNA helicase 159 1e-38
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 159 1e-38
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 159 2e-38
YHR065c [A] KOG0330 ATP-dependent RNA helicase 158 2e-38
YBR142w [A] KOG0347 RNA helicase 158 2e-38
ECU10g1680 [A] KOG0343 RNA Helicase 158 2e-38
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 157 7e-38
YBR237w [A] KOG0334 RNA helicase 156 1e-37
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 156 1e-37
7293369 [A] KOG0343 RNA Helicase 156 1e-37
SPBC4F6.07c [A] KOG0347 RNA helicase 154 3e-37
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 154 6e-37
YLL008w [A] KOG0338 ATP-dependent RNA helicase 153 7e-37
YOR204w [A] KOG0335 ATP-dependent RNA helicase 153 1e-36
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 152 2e-36
CE25231 [A] KOG0343 RNA Helicase 152 2e-36
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 151 3e-36
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 151 4e-36
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 151 4e-36
SPCC10H11.01 [A] KOG0334 RNA helicase 150 5e-36
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 150 6e-36
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 150 8e-36
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 149 1e-35
YNL112w [A] KOG0331 ATP-dependent RNA helicase 149 1e-35
7298752 [A] KOG0330 ATP-dependent RNA helicase 149 1e-35
YFL002c [A] KOG0345 ATP-dependent RNA helicase 149 2e-35
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 149 2e-35
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 148 2e-35
Hs7662318 [A] KOG0334 RNA helicase 148 3e-35
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 148 3e-35
CE23832 [A] KOG0341 DEAD-box protein abstrakt 148 3e-35
CE23814 [A] KOG0340 ATP-dependent RNA helicase 148 3e-35
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 148 3e-35
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 147 4e-35
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 147 4e-35
7294797 [A] KOG0339 ATP-dependent RNA helicase 147 5e-35
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 147 7e-35
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 147 7e-35
CE17559 [A] KOG0339 ATP-dependent RNA helicase 147 7e-35
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 146 9e-35
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 146 9e-35
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 146 1e-34
CE03821 [A] KOG0345 ATP-dependent RNA helicase 146 1e-34
7304081 [A] KOG0338 ATP-dependent RNA helicase 146 1e-34
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 145 2e-34
7293060 [A] KOG0334 RNA helicase 145 2e-34
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 145 3e-34
YKR024c [A] KOG0348 ATP-dependent RNA helicase 144 3e-34
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 144 4e-34
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 144 6e-34
At5g54910 [A] KOG0343 RNA Helicase 144 6e-34
7296891 [A] KOG0341 DEAD-box protein abstrakt 144 6e-34
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 143 8e-34
CE07736 [A] KOG0335 ATP-dependent RNA helicase 143 8e-34
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 143 1e-33
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 143 1e-33
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 142 1e-33
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 142 2e-33
7298989 [A] KOG0336 ATP-dependent RNA helicase 142 2e-33
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 142 2e-33
CE11190 [A] KOG0347 RNA helicase 142 2e-33
CE09012 [A] KOG0335 ATP-dependent RNA helicase 142 2e-33
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 142 2e-33
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 141 3e-33
At1g20920 [A] KOG0334 RNA helicase 141 4e-33
CE18785 [A] KOG0331 ATP-dependent RNA helicase 140 5e-33
CE00337 [A] KOG0330 ATP-dependent RNA helicase 140 5e-33
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 140 6e-33
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 140 8e-33
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 140 8e-33
YDL031w [A] KOG0337 ATP-dependent RNA helicase 139 1e-32
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 139 1e-32
YGL171w [A] KOG0344 ATP-dependent RNA helicase 139 2e-32
CE25121 [A] KOG0335 ATP-dependent RNA helicase 139 2e-32
YHR169w [A] KOG0340 ATP-dependent RNA helicase 138 2e-32
CE27030 [A] KOG0338 ATP-dependent RNA helicase 138 2e-32
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 137 4e-32
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 136 9e-32
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 136 9e-32
CE28369 [A] KOG0335 ATP-dependent RNA helicase 136 9e-32
CE24451 [A] KOG0335 ATP-dependent RNA helicase 136 9e-32
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 136 9e-32
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 135 2e-31
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 134 4e-31
7295314 [A] KOG0331 ATP-dependent RNA helicase 134 4e-31
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 133 1e-30
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 132 1e-30
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 132 1e-30
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 132 1e-30
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 132 2e-30
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 131 3e-30
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 130 5e-30
7290853 [A] KOG0331 ATP-dependent RNA helicase 130 5e-30
CE28031 [A] KOG0334 RNA helicase 130 7e-30
CE27427 [A] KOG0334 RNA helicase 130 7e-30
CE22474 [A] KOG0336 ATP-dependent RNA helicase 130 7e-30
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 130 7e-30
At4g34910 [A] KOG0346 RNA helicase 130 7e-30
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 130 7e-30
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 129 1e-29
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 129 2e-29
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 128 3e-29
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 127 7e-29
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 126 1e-28
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 126 1e-28
CE29052 [A] KOG0335 ATP-dependent RNA helicase 125 2e-28
CE06239 [A] KOG0344 ATP-dependent RNA helicase 125 3e-28
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 124 4e-28
CE28485 [K] KOG4284 DEAD box protein 124 6e-28
7296646 [A] KOG0331 ATP-dependent RNA helicase 124 6e-28
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 123 8e-28
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 122 1e-27
At3g09620 [A] KOG0334 RNA helicase 122 2e-27
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 122 2e-27
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 121 4e-27
YDL160c [A] KOG0326 ATP-dependent RNA helicase 120 9e-27
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 119 2e-26
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 117 6e-26
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 117 8e-26
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 114 4e-25
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 114 5e-25
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 114 5e-25
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 113 1e-24
At3g16840 [A] KOG0347 RNA helicase 113 1e-24
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 2e-24
Hs9506931 [A] KOG0346 RNA helicase 112 2e-24
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 2e-24
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 111 3e-24
7302399 [A] KOG0347 RNA helicase 111 3e-24
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 110 5e-24
Hs9966805 [A] KOG0347 RNA helicase 109 2e-23
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 109 2e-23
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 109 2e-23
7294824 [K] KOG4284 DEAD box protein 108 2e-23
7296165 [A] KOG0330 ATP-dependent RNA helicase 108 3e-23
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 5e-23
YOR046c [A] KOG0332 ATP-dependent RNA helicase 107 6e-23
CE03025 [A] KOG0329 ATP-dependent RNA helicase 107 6e-23
CE00839 [A] KOG0326 ATP-dependent RNA helicase 107 6e-23
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 107 8e-23
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 106 1e-22
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 106 1e-22
7296990 [A] KOG0329 ATP-dependent RNA helicase 106 1e-22
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 106 1e-22
7297629 [A] KOG0326 ATP-dependent RNA helicase 106 1e-22
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 105 2e-22
7293941 [A] KOG0344 ATP-dependent RNA helicase 105 2e-22
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 105 3e-22
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 104 5e-22
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 103 1e-21
YDL084w [A] KOG0329 ATP-dependent RNA helicase 102 1e-21
CE27728 [A] KOG0346 RNA helicase 102 1e-21
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 102 1e-21
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 102 2e-21
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 102 2e-21
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 101 3e-21
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 101 3e-21
CE18221 [A] KOG0332 ATP-dependent RNA helicase 101 4e-21
CE18220 [A] KOG0332 ATP-dependent RNA helicase 101 4e-21
CE18219 [A] KOG0332 ATP-dependent RNA helicase 101 4e-21
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 101 4e-21
YLR276c [A] KOG0346 RNA helicase 100 7e-21
7295505 [A] KOG0346 RNA helicase 99 2e-20
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 98 5e-20
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 97 1e-19
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 96 2e-19
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 94 5e-19
Hs14251212 [K] KOG4284 DEAD box protein 94 5e-19
SPCC1494.06c [A] KOG0346 RNA helicase 92 3e-18
CE29051 [A] KOG0335 ATP-dependent RNA helicase 90 1e-17
CE26264 [A] KOG0335 ATP-dependent RNA helicase 87 8e-17
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 86 2e-16
CE11402 [A] KOG0334 RNA helicase 86 2e-16
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 84 5e-16
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 84 9e-16
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 82 2e-15
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 80 1e-14
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 79 2e-14
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 74 6e-13
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 74 6e-13
YGL064c [A] KOG0335 ATP-dependent RNA helicase 73 2e-12
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 73 2e-12
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 73 2e-12
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 72 2e-12
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 72 3e-12
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 70 8e-12
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 69 2e-11
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 64 8e-10
Hs22045464 [A] KOG0343 RNA Helicase 62 2e-09
7290730 [A] KOG0331 ATP-dependent RNA helicase 60 1e-08
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 60 1e-08
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 55 3e-07
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 51 5e-06
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 472 bits (1215), Expect = e-133
Identities = 249/584 (42%), Positives = 373/584 (63%), Gaps = 7/584 (1%)
Query: 106 QDENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQ 165
++++ ++ K+ + + E ++VT+DSLLEE +LD +HKAI+ M+F LTPVQ
Sbjct: 74 REDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQ 133
Query: 166 QRTIKPILTTEN-DVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLA 224
Q+TIKPIL++E+ DV+A+AKTGTGKT AFL P+FQHLI+TK + VKAVIV PTRDLA
Sbjct: 134 QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLA 193
Query: 225 IQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRV 284
+QI +EVKK+ N LK Y ++L+GGT+ ++ ++ L PNI++ TPGR+ D+L++
Sbjct: 194 LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 253
Query: 285 GAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQ 344
K+F+ VD+KVLDEAD LL+IGF+ +L IS LNE N++ ++I+TLLFSAT+D VQ
Sbjct: 254 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ 313
Query: 345 ELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQK-KN 403
+LA IMNKK+CLF+DTVDKN+ EAH+ IDQ +VI++ FA S+ A ++ I+ ++ ++ N
Sbjct: 314 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSN 373
Query: 404 FKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCT 463
+KAI+F PTVKF F L K + I++FHGKI Q KRT LV RFKK GI VCT
Sbjct: 374 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 433
Query: 464 DVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
DVGARGM FP+V V Q+ VP+ L NYIHRIGRTAR+G+ G++ +F+ ++EL FV EL
Sbjct: 434 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 493
Query: 524 DTNVVIKNQEDYLNQDKENFDMISSIITNNPDFPEALKSIIGFYKGVQNEYRLN-YKVAQ 582
N+VI QE Y ++ +++ ++ D + + S+I Y+ EYR + ++
Sbjct: 494 AKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILP 553
Query: 583 NVLRSFSELHSDSSMLLRFRPSEINNFFSNRDM--RFVSDLIDVKNPHSFGKDREFDDED 640
+ ++ L +D + + ++ +R + + ++ D + K ++DD+
Sbjct: 554 EIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDS 613
Query: 641 RYTXXXXXXXXXXXXXXXXXFEGRNDYSNSRR--SHANQKRNFT 682
+ E +N+RR S +N K N++
Sbjct: 614 EISFRGNKNYNNRSQNRDYDDEPFRRSNNNRRSFSRSNDKNNYS 657
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 203 bits (516), Expect = 8e-52
Identities = 130/385 (33%), Positives = 199/385 (50%), Gaps = 19/385 (4%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E + L + ++S FE +TPVQQR + + E + V +AKTGTGKTLAFL F+
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKD 100
Query: 201 LISTKLQ-NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
++ K + N + +VI++PTR+LA+QI E +KL SY IGG + +
Sbjct: 101 VLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYA----IGGNSKMREE 156
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
+ N N+++ TPGR+ D L D +LDEAD L+ +GF + I +
Sbjct: 157 NAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAV 216
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
T R L FSATM V + I+ D I+ +D N+ H+ + Q ++
Sbjct: 217 TTTKT------RKLCFSATMPPKVSNVFRGILGT-DFKLINCLDPNEPPTHERVPQFVIE 269
Query: 380 TK--SFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
TK S ++L+Q + S + + I+FLPT+ VDF L L +I H
Sbjct: 270 TKLDKVFSSSLSLLQQLTSS---NPSSRIIVFLPTISMVDFVGGVLENHL--KIPCFILH 324
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
+ +R + + F+K GI TDV ARGM FP++ V Q+ P++ +YIHRIGRT
Sbjct: 325 SGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRT 384
Query: 498 ARAGESGAATIFLFREELKFVDELR 522
RAG++G A + L +E F++ ++
Sbjct: 385 GRAGKTGEAYLILLEQEKPFLNSIK 409
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 196 bits (498), Expect = 1e-49
Identities = 136/392 (34%), Positives = 207/392 (52%), Gaps = 22/392 (5%)
Query: 132 EQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTL 191
EQ T EE L KAI M F ++T VQ RTI P+L DV+ AKTG+GKTL
Sbjct: 36 EQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGR-DVLGAAKTGSGKTL 94
Query: 192 AFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIG 251
AFL P + L S K + +++TPTR+LA+QI ++L + + S +IG
Sbjct: 95 AFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFH----SQTFGIVIG 150
Query: 252 GTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTE 311
G N + + L N+++ TPGR+ D L FK++ ++DEAD +L+IGF+ E
Sbjct: 151 GANRRQEAEKLMK-GVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDE 209
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
+ I + L + Q ++LFSAT V++LA I + LFI+ V + D+ D
Sbjct: 210 MRQIIKILPNEDRQ------SMLFSATQTTKVEDLAR-ISLRPGPLFINVVPETDNSTAD 262
Query: 372 SIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRI 431
++Q V+ S ++ S L + + K I+FL + V +++E L+ +
Sbjct: 263 GLEQGYVVCDSDKRFLLLF-----SFLKRNQKKKIIVFLSSCNSVKYYAELLNYI---DL 314
Query: 432 DIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
+++ HGK Q+KRT F GI +CTDV ARG+ P+V+ + Q P +YI
Sbjct: 315 PVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYI 374
Query: 492 HRIGRTARAGE-SGAATIFLFREELKFVDELR 522
HR+GRTAR + G + +FL EL F+ L+
Sbjct: 375 HRVGRTARGTKGKGKSLMFLTPNELGFLRYLK 406
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 194 bits (492), Expect = 5e-49
Identities = 130/388 (33%), Positives = 207/388 (52%), Gaps = 20/388 (5%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
E L ++ +A++ FE TPVQ TI P+L + DV A TG+GKTLAF+ PL + L
Sbjct: 20 EPPLSGDIIEALNQSDFEFCTPVQAATI-PLLCSYKDVAVDAATGSGKTLAFVVPLVEIL 78
Query: 202 I-STKLQ-NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
ST P V VI++PTR+L+ QI + + +L + S+ L+GG + +
Sbjct: 79 RRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVS---TLANVNSVLLVGGREVKADM 135
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
K + N+++GTPGR++DI++R+ F++++ +LDEAD LL++GFQ +++ I +L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+ RT LFSAT V+ELA + ++ + ++ K+ SE+ +
Sbjct: 196 -------PKQRRTGLFSATQTEGVEELAKAGL--RNPVRVEVRAKSKSESSQQLTNSKTP 246
Query: 380 TKSFAESMVALIQSIESEL----LQKKNFKAILFLPTVKFVDFFSETLSE-SLTKRIDII 434
+ E M S+L ++ + K I+F T VD++ LS+ K I +I
Sbjct: 247 SGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLI 306
Query: 435 KFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG + Q R K + F K + G +CTDV ARG+ P +++V Q P + HR
Sbjct: 307 PIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRA 366
Query: 495 GRTARAGESGAATIFLFREELKFVDELR 522
GRTAR G G A +FL +E +V+ +R
Sbjct: 367 GRTARLGRQGRAIVFLLPKEEAYVEFMR 394
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 194 bits (492), Expect = 5e-49
Identities = 125/381 (32%), Positives = 201/381 (51%), Gaps = 21/381 (5%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L ++ +A+ FE TPVQ TI P L + DVV A TG+GKTLAFL P + + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETI-PFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 81
Query: 205 KLQ--NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
P V VI++PTR+L+ QI + P++ S + L+GG ++ + L
Sbjct: 82 NSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNS---VLLVGGREVEADMNTL 138
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
N+++GTPGR++D++ R+ F++++ +LDEAD LL +GFQ +++ I +L
Sbjct: 139 EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL--- 195
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ RT LFSAT V +LA + ++ + +S++ S K
Sbjct: 196 ----PKQRRTGLFSATQTQAVADLAKAGLRNA----MEVISGAESKSKTSSGLYCEYLKC 247
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLT-KRIDIIKFHGKID 441
A+ + + + L++ KN K ++F T VD++ LS+ T K I HGK+D
Sbjct: 248 EADQKSSQLVHL---LIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMD 304
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAG 501
QK R + F + + G+ +CTDV ARG+ P +++V Q P +IHR+GRTAR
Sbjct: 305 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARME 364
Query: 502 ESGAATIFLFREELKFVDELR 522
G A +FL +E +V+ +R
Sbjct: 365 RQGRAIVFLMPKETDYVEFMR 385
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 189 bits (481), Expect = 9e-48
Identities = 133/406 (32%), Positives = 206/406 (49%), Gaps = 23/406 (5%)
Query: 116 KSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTT 175
K + + LN + T+D E L A+ F +LT +Q++ I P
Sbjct: 18 KEEEEEIEELNSQIEALSETVDHFAELPLTQPT-KSALKNAHFITLTEIQKQCI-PSALK 75
Query: 176 ENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQ 235
D++ AKTG+GKTLAF+ PL ++L K + + A++++PTR+LAIQ + K+
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
Query: 236 QCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFK 295
+ L S+ + +IGG N + + L +N I+V TPGR+ +D+ +
Sbjct: 136 R----LHSFSAGLIIGGNNYKEEKERLSRMN--ILVCTPGRLLQHIDQAVNFDTSGLQML 189
Query: 296 VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKD 355
+LDEAD +L +GF+T L I L H +T+LFSAT +V++LA + D
Sbjct: 190 ILDEADRILDMGFRTTLDAIVSSL-------PVHRQTMLFSATQTKSVKDLARLSLQNPD 242
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
+ +V +ND+ + S + +T E + L I + L FK I+FL + K
Sbjct: 243 FI---SVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHL----KFKTIVFLSSCKQ 295
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
V F ET + I ++ HGK Q RT++ +F + H + CTD+ ARG+ FP+V
Sbjct: 296 VRFVYETFRR-MRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAV 354
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+ V QL P + YIHR+GRTAR SG A + L E F+ L
Sbjct: 355 DWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRL 400
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 188 bits (478), Expect = 2e-47
Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 45/424 (10%)
Query: 107 DENSDIEVFKSKSFNVT-TLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQ 165
+EN D V KS + N + T + E F + L N+ KAI M FE++T +Q
Sbjct: 67 NENEDERVQKSVNLNASSTSDIEKF----------SDLQLSENIQKAIKEMGFETMTEIQ 116
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAI 225
+R+I P+L DV+ AKTG+GKTLAFL P + L + K + +I++PTR+LA+
Sbjct: 117 KRSIPPLLAGR-DVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELAL 175
Query: 226 QIASEVKKLQQCNPSLKSYRSL--TLIGGTN----LDKSLKDLHTLNPNIIVGTPGRIND 279
QI K+L LK + +IGG N DK +K + N++V TPGR+ D
Sbjct: 176 QIFGVAKEL------LKYHHQTFGIVIGGANRRAEADKLVKGV-----NLLVATPGRLLD 224
Query: 280 ILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATM 339
L F+++ V+DEAD +L+IGF+ E+ I + L N Q TLLFSAT
Sbjct: 225 HLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ------TLLFSATQ 278
Query: 340 DHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELL 399
V++LA I K L+++ + + ++Q V+ S + L+ S L
Sbjct: 279 TTKVEDLAR-ISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDS--DKRFLLLFSFLKRNL 335
Query: 400 QKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGI 459
+KK I+F+ + V + +E L+ + ++ HGK Q++RT F GI
Sbjct: 336 KKK---VIVFMSSCASVKYMAELLNYI---DLPVLDLHGKQKQQRRTNTFFEFCNAEKGI 389
Query: 460 FVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGE-SGAATIFLFREELKFV 518
+CT+V ARG+ P+V+ + Q P +YIHR+GRTAR + +G + +FL EL F+
Sbjct: 390 LLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFL 449
Query: 519 DELR 522
L+
Sbjct: 450 RYLK 453
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 184 bits (468), Expect = 3e-46
Identities = 135/429 (31%), Positives = 214/429 (49%), Gaps = 31/429 (7%)
Query: 107 DENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVH-----KAISAMKFESL 161
DEN + + K+ S + + T DS L ++ D KAI FE++
Sbjct: 323 DENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETM 382
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST------KLQNPLAVKAV 215
T VQ+ T+ PI+ DV+AKAKTGTGKT+AFL P + +I + Q P+ V +
Sbjct: 383 TVVQEATL-PIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIV--L 439
Query: 216 IVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPG 275
+V PTR+LA Q A+E L + +PS+ +IGGT L + + T I+V TPG
Sbjct: 440 VVCPTRELASQAAAEANTLLKYHPSIGVQ---VVIGGTKLPTEQRRMQTNPCQILVATPG 496
Query: 276 RINDILDRVG--AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTL 333
R+ D ++ A V VLDEAD LL +GF+ ++ I + + +T
Sbjct: 497 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAV-------PKQRQTF 549
Query: 334 LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQS 393
LFSAT+ V+++ + K+D FI+ V + E H + Q +I S L
Sbjct: 550 LFSATVPEEVRQICHVAL-KRDHEFINCVQEGSGETHQKVTQMYMIA-SLDRHFSLLHVL 607
Query: 394 IESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFK 453
++ + ++K I+F T ++ LS+ +++ + H + Q RT++ D F+
Sbjct: 608 LKEHIADNVDYKVIIFCTTAMVTRLVADLLSQL---SLNVREIHSRKPQSYRTRVSDEFR 664
Query: 454 KTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFRE 513
K+ I V +DV ARG+ +P V V Q+ +P+ YIHR+GRT R G+ G + L
Sbjct: 665 KSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPW 724
Query: 514 ELKFVDELR 522
E F+ ++
Sbjct: 725 EEYFMSSVK 733
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 183 bits (464), Expect = 9e-46
Identities = 131/415 (31%), Positives = 215/415 (51%), Gaps = 27/415 (6%)
Query: 138 SLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPL 197
S L++ L V + + + F+ +TPVQ I P+L DV A+A TG+GKTLAFL P+
Sbjct: 7 SSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAI-PLLLARKDVSAEAVTGSGKTLAFLVPM 65
Query: 198 FQHLISTKLQNPLAVK---AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
+ L + P K A++++PTR+LA QI+ + + + + L+ ++GG +
Sbjct: 66 LEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLE-HEDLEHLNQQLIVGGNS 124
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDRVG-----AKYFKDVDFKVLDEADTLLQIGFQ 309
+++ + L P I+V TPGR+ D+ R G A K ++F VLDEAD LL +GF+
Sbjct: 125 IEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFK 184
Query: 310 TELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEA 369
T ++ I L RT LFSAT V +L + + + ++ A
Sbjct: 185 TSVNNILGYL-------PRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPA 237
Query: 370 HDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
++V + VAL++ + S K ++F PT V++++E L L K
Sbjct: 238 RLQNFYRIVEPEL---KFVALLEFLSSPATVIG--KVMVFFPTCACVEYWAEALPPLLPK 292
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
R ++ HGK+ + KR +V++F+ T + +CTDV ARG+ P +E V Q P++ +
Sbjct: 293 RT-VLGIHGKM-KNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASS 350
Query: 490 YIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFD 544
++HR+GRTAR G G A +FL E +V L+ + V + L ++ E+ D
Sbjct: 351 FVHRVGRTARQGNEGNALVFLLPSEDAYVHFLKINQKVELTK---LLTEEAEDAD 402
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 181 bits (460), Expect = 3e-45
Identities = 140/465 (30%), Positives = 228/465 (48%), Gaps = 50/465 (10%)
Query: 134 VTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAF 193
VT DSL L AI M F+ +T +Q +I+P+L + DV+ A+TG+GKTLAF
Sbjct: 89 VTFDSLD----LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK-DVLGAARTGSGKTLAF 143
Query: 194 LAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGT 253
L P + L + +++ PTR+LAIQ + ++L + + S +IGG
Sbjct: 144 LIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSM----VIGGN 199
Query: 254 NLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELS 313
N + + + N+++ TPGR+ D L A +K + V+DEAD +L+ F+ +++
Sbjct: 200 NRRSEAQRIAS-GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMN 258
Query: 314 LISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSI 373
I + L + +T LFSAT V++LA + + +D D ++ +
Sbjct: 259 KILKILPKTR-------QTALFSATQTSKVKDLARVSLTSP--VHVDVDDGRRKVTNEGL 309
Query: 374 DQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDI 433
+Q + S + ++ LI ++ L N K ++F T K V F +E + S +D+
Sbjct: 310 EQGYCVVPS-KQRLILLISFLKKNL----NKKIMVFFSTCKSVQFHTEIMKIS---DVDV 361
Query: 434 IKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHR 493
HG +DQ +RTK F K GI +CTDV ARG+ PSV+ + Q P YIHR
Sbjct: 362 SDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHR 421
Query: 494 IGRTARA-GESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSIITN 552
+GRTAR G G A + L EEL+F+ L+ V +K L +++ + S +
Sbjct: 422 VGRTARGEGAKGKALLVLIPEELQFIRYLKA-AKVPVKE----LEFNEKRLSNVQSALE- 475
Query: 553 NPDFPEALKSIIGFYKGVQNEYRLNYKVAQNVLRSFSELHSDSSM 597
K V +Y LN K+A++ R++ ++ S+
Sbjct: 476 ---------------KCVAKDYNLN-KLAKDAYRAYLSAYNSHSL 504
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 181 bits (458), Expect = 4e-45
Identities = 149/480 (31%), Positives = 236/480 (49%), Gaps = 47/480 (9%)
Query: 116 KSKSFNVTTLNPESFHEQVTI--DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPIL 173
KS+ V E E+ +I + E L N +K+I M F +T +Q + I P++
Sbjct: 130 KSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLM 189
Query: 174 TTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKK 233
E DV+ A+TG+GKTLAFL P + L K +++ PTR+LAIQ K+
Sbjct: 190 MGE-DVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Query: 234 LQQCNPSLKSYRSLTL---IGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFK 290
L + Y S T+ IGG K+ ++ N++V TPGR+ D L+ FK
Sbjct: 249 LLK-------YHSQTVGKVIGGEKR-KTEAEILAKGVNLLVATPGRLLDHLENTNGFIFK 300
Query: 291 DVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATI 350
++ F V+DEAD +L+ F+ +L I L + +T LFSAT V++LA
Sbjct: 301 NLKFLVMDEADRILEQNFEEDLKKILNLLPKTR-------QTSLFSATQSAKVEDLARVS 353
Query: 351 MNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFL 410
+ ++ID + ++ ++Q + S A ++ L+ ++ +KK ++F
Sbjct: 354 LTSP--VYIDVDEGRKEVTNEGLEQGYCVVPS-AMRLLFLLTFLKRFQGKKK---IMVFF 407
Query: 411 PTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGM 470
T K F +E + D ++ G IDQ KRT +F K GI +CT+V ARG+
Sbjct: 408 STCKSTKFHAELFRYI---KFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGL 464
Query: 471 HFPSVEHVYQLCVPTSLPNYIHRIGRTARA-GESGAATIFLFREELKFVDELRRDTNVVI 529
FP V+ + Q P + +YIHR+GRTAR G G A + L +ELKF+ L+ V
Sbjct: 465 DFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPV- 523
Query: 530 KNQEDYLNQDKENFDM---ISSIITNN----PDFPEALKSIIGFY-----KGVQNEYRLN 577
E++ ++K+ D+ + ++I+ N EA K+ I Y K V N ++LN
Sbjct: 524 ---EEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSMKDVFNVHQLN 580
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 179 bits (454), Expect = 1e-44
Identities = 135/439 (30%), Positives = 223/439 (50%), Gaps = 34/439 (7%)
Query: 113 EVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPI 172
++ K KS + + H+ + +ES + KA+SA +T VQ T+
Sbjct: 303 DLSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSEC 362
Query: 173 LTTENDVVAKAKTGTGKTLAFLAPLFQHLI----STKLQNPLA-VKAVIVTPTRDLAIQI 227
L + D + KAKTGTGK++AFL P + ++ S K N +A + A+I+ PTR+LA QI
Sbjct: 363 LDGK-DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
Query: 228 ASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAK 287
A+E K L + + + TLIGGT + L + I++ TPGR+ D ++
Sbjct: 422 AAEGKALLKFHDGIGVQ---TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGL 478
Query: 288 YFKDVDFK--VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQE 345
+ + K ++DEAD LL +GF+ ++ I L ++LLFSAT+ V+
Sbjct: 479 TSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCL-------PRQRQSLLFSATIPKEVRR 531
Query: 346 LAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKK-NF 404
++ ++ K+D +IDT+ E HD + Q ++ ES L+ + E + ++
Sbjct: 532 VSQLVL-KRDHSYIDTIGLGCVETHDKVRQSCIVAPH--ESHFHLVPHLLKEHINNTPDY 588
Query: 405 KAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTD 464
K I+F T L E ++++ + H + Q RT++ D FK++N I V +D
Sbjct: 589 KIIVFCSTGMVTSLMYTLLREM---KLNVREIHARKPQLHRTRVSDEFKESNRLILVTSD 645
Query: 465 VGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELR-- 522
V ARGM++P V V Q+ +P+ YIHR+GRT R G+ G + + E F+DEL+
Sbjct: 646 VSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDL 705
Query: 523 -------RDTNVVIKNQED 534
D + ++K+Q D
Sbjct: 706 PLEPIPAPDLDSIVKHQVD 724
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 179 bits (453), Expect = 2e-44
Identities = 131/432 (30%), Positives = 217/432 (49%), Gaps = 31/432 (7%)
Query: 106 QDENSDIEVFKSKSFNVTTLNPESFHE----QVTIDSLLEESLLDANVH-----KAISAM 156
++E+ D + K K+ + + E+ E + DS L ++ D KAI
Sbjct: 13 EEEDQDYDFLKKKAVSAFGFDKENVIEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDA 72
Query: 157 KFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNP----LAV 212
+E++T VQ+ T+ PI+ DV+AKAKTGTGKT+AFL P + ++ + +P +
Sbjct: 73 GYETMTVVQEATL-PIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPI 131
Query: 213 KAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVG 272
A+++ PTR+LA Q A+E L + +PS+ +IGGT L K + T I+V
Sbjct: 132 LALVICPTRELANQAATEANTLLKYHPSIGVQ---VVIGGTRLGLEQKRMQTNPCQILVA 188
Query: 273 TPGRINDILDRVG--AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
TPGR+ D ++ A K V VLDEAD LL +GF+ ++ I + +
Sbjct: 189 TPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAV-------PKER 241
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+T LFSAT+ V+++ + ++D F++ V + E H + Q +I S L
Sbjct: 242 QTFLFSATVPEEVRQICLVAL-RRDHEFVNCVHEGTIETHQQVRQMHMIA-SLDRHFSLL 299
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
+ ++ ++K I+F T ++ L E +++ + H + Q RT++ +
Sbjct: 300 YTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGEL---NLNVREIHSRKPQSYRTRVSN 356
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
F+K+ I V +DV ARG+ +P V V Q+ +P YIHR+GRT R G+ G + L
Sbjct: 357 EFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLL 416
Query: 511 FREELKFVDELR 522
E F+ L+
Sbjct: 417 APWEEYFLSSLK 428
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 177 bits (448), Expect = 6e-44
Identities = 124/399 (31%), Positives = 208/399 (52%), Gaps = 35/399 (8%)
Query: 132 EQVTIDSL-LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKT 190
E V D L + E + + KA+S+ E L P+Q+ ++P + D++ +A+TGTGKT
Sbjct: 97 ESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKT 155
Query: 191 LAFLAPLFQHLISTKLQ-----NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYR 245
LAF P+ +I + NPL + ++ PTR+LA Q+ E ++ S S
Sbjct: 156 LAFGIPIIDKIIKYNAKHGRGRNPLCL---VLAPTRELARQVEKEFRE------SAPSLD 206
Query: 246 SLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ 305
++ L GGT + + ++ L ++ VGTPGR+ D++ R GA +V F VLDEAD +LQ
Sbjct: 207 TICLYGGTPIGQQMRQLD-YGVDVAVGTPGRVIDLMKR-GALNLSEVQFVVLDEADQMLQ 264
Query: 306 IGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKN 365
+GF ++ +I KL E ++++FSATM ++ L +N L +D V +
Sbjct: 265 VGFAEDVEIILEKLPEKR-------QSMMFSATMPSWIRSLTKKYLNNP--LTVDLVGDS 315
Query: 366 DSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSE 425
D + D I +I S+ + ++I + +E K K I+F T + D LS
Sbjct: 316 DQKLADGITTYSIIADSYGRA--SIIGPLVTE--HAKGGKCIVFTQTKRDAD----RLSY 367
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
+L + HG I Q +R + + F+ + I V TDV ARG+ P+V+ + +P
Sbjct: 368 ALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPN 427
Query: 486 SLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRD 524
+ ++HR GRT RAG+ G+A + +++ + V + R+
Sbjct: 428 NTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIERE 466
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 176 bits (447), Expect = 8e-44
Identities = 144/469 (30%), Positives = 228/469 (47%), Gaps = 51/469 (10%)
Query: 143 SLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI 202
+L++ N KAI M F ++T +Q ++I+P+L D++A AKTG+GKTLAFL P + ++
Sbjct: 184 NLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGR-DLLAAAKTGSGKTLAFLIPAVELIV 242
Query: 203 STKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
+ +I++PTR+LA+Q +K+L + + +Y ++GG+N + L
Sbjct: 243 KLRFMTRNGTGVLILSPTRELAMQTFGVLKELMTHH--VHTYG--LIMGGSNRSAEAQKL 298
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
NIIV TPGR+ D + +K++ V+DEAD +L +GF+ EL I + L
Sbjct: 299 GN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL--- 354
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+T+LFSAT V++LA I KK+ L++ D + D ++Q V+ S
Sbjct: 355 ----PTRRQTMLFSATQTRKVEDLAR-ISLKKEPLYVGVDDDKANATVDGLEQGYVVCPS 409
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
E L+ + L + + K ++F + V + E L+ + ++ HGK Q
Sbjct: 410 --EKRFLLLFTF---LKKNRKKKLMVFFSSCMSVKYHYELLNYI---DLPVLAIHGKQKQ 461
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA-G 501
KRT +F + G +CTDV ARG+ P V+ + Q P YIHR+GRTAR
Sbjct: 462 NKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 521
Query: 502 ESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDK---ENFDMISSIITNNPDFPE 558
G A + L EEL F+ YL Q K FD S I+ D
Sbjct: 522 GRGHALLILRPEELGFL---------------RYLKQSKVPLSEFDFSWSKIS---DIQS 563
Query: 559 ALKSIIGFYKGVQNEYRLNYKVAQNVLRSFSELHSDSSMLLRFRPSEIN 607
L+ +I + Y L +K AQ +S+ + S+ F + +N
Sbjct: 564 QLEKLI------EKNYFL-HKSAQEAYKSYIRAYDSHSLKQIFNVNNLN 605
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 174 bits (442), Expect = 3e-43
Identities = 133/397 (33%), Positives = 207/397 (51%), Gaps = 34/397 (8%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
+D + A++A F+ +TPVQ I P+ D+V +A TG+GKTLA+L P F ++
Sbjct: 8 IDKWLKNAVAAQGFKKMTPVQANAI-PLFLKNKDLVVEAVTGSGKTLAYLLPCFDK-VTR 65
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNP-SLKSYRSLTL---IGGTN-LDKSL 259
+ + + A+IV PTR+LA QI + K+L P SL + L IGG L L
Sbjct: 66 RDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDL 125
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
NP++++GTPGR+N++L + +K+ ++ +LDEADTL+ +GFQ R L
Sbjct: 126 ASFREKNPSVVIGTPGRLNEMLSHISSKH---LEILILDEADTLIDMGFQ-------RTL 175
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELA--ATIMNKKDCLFIDTVDKNDSEAHDSID-QK 376
+Q + RT LFSATM+ V A + N T K D+ S+ Q
Sbjct: 176 QSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQS 235
Query: 377 LVITKSF-AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRI--DI 433
LVI + + M+ L+ +IE E KAI+F + V++F+ LT ++ +I
Sbjct: 236 LVIPPIYKVQCMIHLLCTIEYE-------KAIVFFSSCASVEYFNSLF---LTYKLPFEI 285
Query: 434 IKFHGKIDQKKRTKLVDRFKKTNHG-IFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
+ HG+ Q R++ ++FKK+N + TD+ +RG+ P+V+ V QL P ++ H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 493 RIGRTARAGESGAATIFLFREELKFVDELRRDTNVVI 529
R GR RAG +G A + L + +EL R V I
Sbjct: 346 RCGRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPI 382
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 174 bits (441), Expect = 4e-43
Identities = 120/379 (31%), Positives = 193/379 (50%), Gaps = 24/379 (6%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI-----STK 205
K I F+++T VQ+ T+ P++ D++AKAKTGTGKT+AFL P + +I S
Sbjct: 93 KGIEDAGFKTMTVVQEATL-PLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRD 151
Query: 206 LQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTL 265
++P + ++V PTR+LA Q A+E L + +PS+ +IGGT L + L
Sbjct: 152 NRHPPII-VLVVCPTRELACQAAAEANILLKYHPSIGVQ---VVIGGTKLPTEQRRLQKS 207
Query: 266 NPNIIVGTPGRINDILDRVG--AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFN 323
I+V TPGR+ D +D A V VLDEAD LL +GF+ E+ I +
Sbjct: 208 PCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAV---- 263
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
+ +T LFSAT+ V+++ + K+D F++ V + E H + Q +I S
Sbjct: 264 ---PKQRQTFLFSATVSDEVRQICHVAL-KRDHEFVNCVQEGAGETHQKVSQMYMIA-SL 318
Query: 384 AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
L ++ + +K I+F T ++ L + +++ + H + Q
Sbjct: 319 DRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKL---SLNVREIHSRKPQS 375
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
RT++ D F+K+ I V +DV ARG+ +P V V Q+ +P+ YIHR+GRT R G+
Sbjct: 376 YRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKE 435
Query: 504 GAATIFLFREELKFVDELR 522
G + L E F+ ++
Sbjct: 436 GEGVLLLAPWEEYFLSSVK 454
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 172 bits (437), Expect = 1e-42
Identities = 127/421 (30%), Positives = 211/421 (49%), Gaps = 31/421 (7%)
Query: 113 EVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPI 172
++ K +S + + H+ + +ES + KA+SA +T VQ T+
Sbjct: 350 DLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSEC 409
Query: 173 LTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-----LQNPLAVKAVIVTPTRDLAIQI 227
L + D + KAKTGTGK++AFL P + ++ + + +I+ PTR+LA QI
Sbjct: 410 LDGK-DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
Query: 228 ASEVKKLQQCNPSLKSYRSL---TLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRV 284
A+E K L LK++ + TLIGGT + L + I++ TPGR+ D ++
Sbjct: 469 AAEGKAL------LKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENK 522
Query: 285 GAKYFKDVDFK--VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHN 342
+ + K ++DEAD LL +GF+ ++ I L ++LLFSAT+
Sbjct: 523 SGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCL-------PRQRQSLLFSATIPKE 575
Query: 343 VQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKK 402
V+ ++ ++ K+D +IDT+ E HD + Q ++ ES L+ + E +
Sbjct: 576 VRRVSQLVL-KRDHSYIDTIGLGCVETHDKVKQSCIVAPH--ESHFHLVPHLLKEHINNM 632
Query: 403 -NFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFV 461
++K I+F T L E ++++ + H + Q RT + D FK++N I V
Sbjct: 633 PDYKIIVFCSTGMVTSLMYTLLREM---KLNVREIHARKPQLHRTCVSDEFKESNRLILV 689
Query: 462 CTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+DV ARGM++P V V Q+ +P+ YIHR+GRT R G+ G + + E F+DEL
Sbjct: 690 TSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDEL 749
Query: 522 R 522
+
Sbjct: 750 K 750
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 172 bits (436), Expect = 2e-42
Identities = 132/414 (31%), Positives = 206/414 (48%), Gaps = 34/414 (8%)
Query: 106 QDENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQ 165
Q E+ IE K+K + + ++T ++ + K + F LT +Q
Sbjct: 17 QKEDEYIENLKTKI--------DEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQ 68
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAI 225
+I P+ +DV+A AKTG+GKTLAFL P+ + L K + A+I++PTR+LA+
Sbjct: 69 ADSI-PVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAM 127
Query: 226 QIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVG 285
QI + K+ S S+ + +IGG ++ L+ + +N I++GTPGRI LD+
Sbjct: 128 QIYEVLTKIG----SHTSFSAGLVIGGKDVKFELERISRIN--ILIGTPGRILQHLDQAV 181
Query: 286 AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQE 345
++ VLDEAD L +GF+ L I L+ +TLLFSAT +V +
Sbjct: 182 GLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSR-------QTLLFSATQSQSVAD 234
Query: 346 LAATIMNKKDCLFIDTVDKNDSEAHDSID-----QKLVITKSFAESMVALIQSIESELLQ 400
LA ++ D + T D D + Q+ I A+ + L I+S L
Sbjct: 235 LAR--LSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHL-- 290
Query: 401 KKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIF 460
K I+FL + K V F ET + + I ++ HG+ Q+ RT+ +D+F +
Sbjct: 291 --KCKMIVFLSSSKQVHFVYETFRK-MQPGISLMHLHGRQKQRARTETLDKFNRAQQVCL 347
Query: 461 VCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREE 514
TDV ARG+ FP+V+ V Q+ P + YIHR+GR AR G+ G + I L +E
Sbjct: 348 FATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQE 401
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 170 bits (430), Expect = 8e-42
Identities = 119/387 (30%), Positives = 200/387 (50%), Gaps = 38/387 (9%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
+ + KA+ E L P+Q+ ++P + D++ +A+TGTGKTLAF P+ +I
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKIIKF 181
Query: 205 KLQ-----NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
+ NP + +++ PTR+LA Q+ E ++ S S ++ L GGT + + +
Sbjct: 182 NAKHGRGKNP---QCLVLAPTRELARQVEKEFRE------SAPSLDTICLYGGTPIGQQM 232
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
++L+ ++ VGTPGRI D++ R GA +V F VLDEAD +LQ+GF ++ +I +KL
Sbjct: 233 RELN-YGIDVAVGTPGRIIDLMKR-GALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
++++FSATM ++ L +N L ID V +D + D I +
Sbjct: 291 PAKR-------QSMMFSATMPSWIRSLTKKYLNNP--LTIDLVGDSDQKLADGITMYSIA 341
Query: 380 TKSFAESMVALIQSIESELLQK--KNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
S+ + SI L+++ K K I+F T + D L+ L K H
Sbjct: 342 ADSYGRA------SIIGPLVKEHGKGGKCIVFTQTKRDAD----RLAFGLAKSYKCEALH 391
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
G I Q +R + + F+ N I V TDV ARG+ P+V+ V +P + ++HR GRT
Sbjct: 392 GDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRT 451
Query: 498 ARAGESGAATIFLFREELKFVDELRRD 524
RAG+ G+A + +++ + V + ++
Sbjct: 452 GRAGKKGSAILIHGQDQTRAVKMIEKE 478
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 169 bits (428), Expect = 1e-41
Identities = 120/380 (31%), Positives = 193/380 (50%), Gaps = 37/380 (9%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQN 208
V + I F+ TP+Q + PI+ D++ A+TGTGKTL +L P F HL+ LQ
Sbjct: 253 VMENIKKAGFQKPTPIQSQAW-PIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV---LQP 308
Query: 209 PLAVKA-----VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
L + +++TPTR+LA+Q+ E C S K RS+ + GG N D+ +++L
Sbjct: 309 SLKGQRNRPGMLVLTPTRELALQVEGEC-----CKYSYKGLRSVCVYGGGNRDEQIEELK 363
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFN 323
+II+ TPGR+ND L K++ + VLDEAD +L +GF+ ++ I +
Sbjct: 364 K-GVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDR 421
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
+T++ SAT H+V LA + + + +++ T+D A S+ Q +++T
Sbjct: 422 -------QTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDL---VAVSSVKQNIIVTTEE 471
Query: 384 AE--SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKID 441
+ M +QS+ S K I+F+ D S S+ + I + HG +
Sbjct: 472 EKWSHMQTFLQSMSS------TDKVIVFVSRKAVADHLS---SDLILGNISVESLHGDRE 522
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAG 501
Q+ R K ++ FK I + TD+ +RG+ V HVY P ++ Y+HRIGRT RAG
Sbjct: 523 QRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAG 582
Query: 502 ESGAATIFLFREELKFVDEL 521
+G + L R + + EL
Sbjct: 583 RTGVSITTLTRNDWRVASEL 602
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 166 bits (420), Expect = 1e-40
Identities = 125/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 123 TTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAK 182
T L S H+ EE+ L ++ I+ + LTPVQ+ +I PI+ D++A
Sbjct: 273 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSI-PIILAGRDLMAC 331
Query: 183 AKTGTGKTLAFLAPLFQHLIST--------KLQNPLAVKAVIVTPTRDLAIQIASEVKKL 234
A+TG+GKT AFL P+ H++ +LQ P + +IV PTR+L QI E +K
Sbjct: 332 AQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP---ECIIVAPTRELVNQIYLEARKF 388
Query: 235 QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDIL--DRVGAKYFKDV 292
R++ + GGT L S++ + NI+ TPGR+ DI+ +++G K K
Sbjct: 389 SFGT----CVRAVVIYGGTQLGHSIRQI-VQGCNILCATPGRLMDIIGKEKIGLKQIK-- 441
Query: 293 DFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMN 352
+ VLDEAD +L +GF E+ + ++ +E +TL+FSAT +Q LAA +
Sbjct: 442 -YLVLDEADRMLDMGFGPEMKKL---ISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFL- 496
Query: 353 KKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA--ESMVALIQSIESELLQKKNFKAILFL 410
K + LF+ V + D + Q ++ F+ E +V ++++I E + ++F+
Sbjct: 497 KSNYLFV-AVGQVGGACRD-VQQTVLQVGQFSKREKLVEILRNIGDE-------RTMVFV 547
Query: 411 PTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGM 470
T K DF + L + ++I HG +Q++R + + F+ + V T V ARG+
Sbjct: 548 ETKKKADFIATFLCQ---EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGL 604
Query: 471 HFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF 509
+V+HV +P+++ Y+HRIGRT R G +G A F
Sbjct: 605 DIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 643
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 166 bits (419), Expect = 1e-40
Identities = 130/435 (29%), Positives = 220/435 (49%), Gaps = 41/435 (9%)
Query: 142 ESL-LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
ESL L NV AI ++ TP+Q++T+ P++ + DVVA A+TG+GKT AFL P+ +
Sbjct: 31 ESLNLGPNVFNAIKKKGYKVPTPIQRKTM-PLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
L Q V+A+I++PTRDLA Q K+L + R L+GG +++ +
Sbjct: 90 LKQHVPQG--GVRALILSPTRDLAEQTLKFTKELGK----FTDLRVSLLVGGDSMEDQFE 143
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
+L T P++I+ TPGR+ +L V + V++ V DEAD+L +GF + +L+
Sbjct: 144 EL-TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGF-------AEQLH 195
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL-VI 379
+ TQ E+ +TLLFSAT+ + E A + + + +D +K S D KL +
Sbjct: 196 QILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKI------SPDLKLSFL 249
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
T E AL+ + + + + ++F+ T V+F + + I+ +G
Sbjct: 250 TVRPEEKYSALLYLVREHISSDQ--QTLIFVSTKHHVEFVNSLFK---LENIEPSVCYGD 304
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
+DQ R V RF+ + + TD+ ARG+ P +++V P ++HR+GR AR
Sbjct: 305 MDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAAR 364
Query: 500 AGESGAATIFLFREELKFVDELR----------RDTNVVIKNQEDYLNQDKENFDMISSI 549
AG +G A F+ E++ ++ +L + V+KN E+ + + + D S
Sbjct: 365 AGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAID---SG 421
Query: 550 ITNNPDFPEALKSII 564
+T FP+ +I
Sbjct: 422 VTVYGRFPQKTIDLI 436
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 165 bits (418), Expect = 2e-40
Identities = 118/402 (29%), Positives = 208/402 (51%), Gaps = 49/402 (12%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD +V+KAI F TP+Q++TI P + DVVA ++TG+GKT AF+ P+ Q L
Sbjct: 31 LDHSVYKAIEKKGFNQPTPIQRKTI-PCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL--- 86
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
K ++ ++A++V+PTR+LA+Q VK+L + R L+GG +++ +H
Sbjct: 87 KRRDTTGIRALMVSPTRELALQTFKVVKELGR----FTGLRCACLVGGDQIEEQFSTIHE 142
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
NP+I++ TPGR+ ++ + + V + V DEAD L ++GFQ +L+ +++ E
Sbjct: 143 -NPDILLATPGRLLHVIVEMDLR-LSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESR- 199
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSI------DQKLV 378
+TLLFSAT+ + + A + + +D VD+ S+ + D+KL
Sbjct: 200 ------QTLLFSATLPKMLVDFAKAGLTDPMLVRLD-VDEKVSDKLSMVFCMCRPDEKLF 252
Query: 379 ----ITKSF---------------AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFF 419
+ ++F ++ V L++ + + ++N + ++F T+K V++
Sbjct: 253 ALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVR---MDRENKQTVVFCATMKHVEYV 309
Query: 420 SETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVY 479
L + ID + ++D R + +F + + I V TDV ARG+ P ++ V
Sbjct: 310 VGILHRA---GIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVI 366
Query: 480 QLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
L P ++HR+GR ARAG SG A + +EL ++ +L
Sbjct: 367 NLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDL 408
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 165 bits (417), Expect = 2e-40
Identities = 118/377 (31%), Positives = 189/377 (49%), Gaps = 25/377 (6%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
K ++ + + TP+QQ+ I IL + D + AKTG+GKT AF P+ + L + P+
Sbjct: 20 KQLTKLGLKGATPIQQKCIPAILAGQ-DCIGAAKTGSGKTFAFALPILERLS----EEPV 74
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+ A+++TPT +LA QI+ + Q R + GGT+ + L P+I+
Sbjct: 75 SHFALVLTPTHELAYQISEQFLVAGQA----MGVRVCVVSGGTDQMVESQKLMQ-RPHIV 129
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
V PGR+ D L F ++ + V+DEAD +L F LS+I R L +
Sbjct: 130 VAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTR------- 182
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+ L FSATM ++E ++ DC + +D +++DQ+ ++ + MV L
Sbjct: 183 QNLFFSATMKDFIKE-SSIFPIASDCF--EWSQDSDVATVETLDQRYLLCADYDRDMV-L 238
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
I+++ + +N ++F T K+ S TL ID + HG + QK+R +
Sbjct: 239 IEALRKYREENENANVMIFTNTKKYCQLLSMTLKNM---EIDNVCLHGFMRQKERVAALS 295
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG-AATIF 509
RFK + TDV ARG+ PSVE V +P + YIHR+GRTARAG G + +IF
Sbjct: 296 RFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIF 355
Query: 510 LFREELKFVDELRRDTN 526
F +L+ + + + N
Sbjct: 356 RFPRDLELLAAIEEEIN 372
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 164 bits (416), Expect = 3e-40
Identities = 135/426 (31%), Positives = 217/426 (50%), Gaps = 41/426 (9%)
Query: 106 QDENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQ 165
+DE E K ++ + F + T SL E ++AN+ KA+ + F ++T +Q
Sbjct: 38 EDEEEVEEEQKHQTEESSETKVSEFLTKTTFASL--EGKVNANLLKAVQGLGFTTMTEIQ 95
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ--HLISTKLQNPLAVKAVIVTPTRDL 223
++I P+L + DV+A AKTG+GKTLAFL P + H ++ K N V +IV+PTR+L
Sbjct: 96 AKSIDPLLEGK-DVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGV--IIVSPTREL 152
Query: 224 AIQIASEVKKLQQCNPSLKSYRSLT---LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDI 280
++Q + +L + + +LT ++GG+N KD +I+V TPGR+ D
Sbjct: 153 SMQTYGVLSELLEGS-------NLTYGLVMGGSNRSAE-KDKLAKGVSILVATPGRLLDH 204
Query: 281 LDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMD 340
L +++ ++DEAD +L IGF+ E+ + R L + +++LFSAT
Sbjct: 205 LQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHL-------PKQRQSMLFSATHS 257
Query: 341 HNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQ 400
V EL ++ + + +K + + + Q ++ S ++ + L +
Sbjct: 258 PKVDELVKLALHSNP-VRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLF-----TFLKK 311
Query: 401 KKNFKAILFLPTVKFVDFFSETLSESLTKRIDI--IKFHGKIDQKKRTKLVDRFKKTNHG 458
K K ++F + V F E L+ IDI + HGK Q+KRT +F + G
Sbjct: 312 NKTKKVMVFFSSCNSVKFHHELLNY-----IDIPCMSIHGKQKQQKRTTTFFQFCQAETG 366
Query: 459 IFVCTDVGARGMHFPSVEHVYQLCVPTSLPN-YIHRIGRTAR-AGESGAATIFLFREELK 516
I +CTDV ARG+ P+V+ + Q PT P YIHR+GRTAR SG A + L EEL
Sbjct: 367 ILLCTDVAARGLDIPAVDWIVQYD-PTDEPREYIHRVGRTARGTNGSGKALLVLRPEELG 425
Query: 517 FVDELR 522
F+ L+
Sbjct: 426 FLRYLK 431
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 164 bits (414), Expect = 5e-40
Identities = 122/366 (33%), Positives = 183/366 (49%), Gaps = 27/366 (7%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-LQNPLA 211
I K+ TPVQ+ I PIL D++A A+TG+GKT AF P+ ++ + +Q P
Sbjct: 174 IRRCKYVKPTPVQRHAI-PILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRG 232
Query: 212 VK-----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
+ AVI++PTR+LA QI E KK + + GGT +++ L++L
Sbjct: 233 SRTVYPLAVILSPTRELASQIHDEAKKFSYQT----GVKVVVAYGGTPINQQLRELER-G 287
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+I+V TPGR+ND+L+R + + F LDEAD +L +GF+ ++ RK+ E
Sbjct: 288 VDILVATPGRLNDLLERARVS-MQMIRFLALDEADRMLDMGFEPQI----RKIVEQMDMP 342
Query: 327 EEHIR-TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL--VITKSF 383
+R TLLFSAT +Q LAA + L + V + D I Q++ V+
Sbjct: 343 PRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSST----DLIVQRVEFVLDSDK 398
Query: 384 AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
++ L+ + +Q K ++F+ T + D L HG Q+
Sbjct: 399 RSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLC---INGFPATSIHGDRTQQ 455
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
+R + FK I V TDV ARG+ P V HV +P + +Y+HRIGRT RAG+S
Sbjct: 456 EREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 515
Query: 504 GAATIF 509
G AT F
Sbjct: 516 GLATAF 521
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 164 bits (414), Expect = 5e-40
Identities = 115/376 (30%), Positives = 197/376 (51%), Gaps = 31/376 (8%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
L + ++D NV+K+ ++ TP+Q+ +I P++++ D++A A+TG+GKT AFL P+
Sbjct: 252 LRDIIID-NVNKS----GYKIPTPIQKCSI-PVISSGRDLMACAQTGSGKTAAFLLPILS 305
Query: 200 HLISTKLQNPLA-VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKS 258
L+ + L + VIV+PTR+LAIQI +E +K + +SY + ++ G +
Sbjct: 306 KLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF-----AFESYLKIGIVYGGTSFRH 360
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRK 318
+ T ++++ TPGR+ D +DR F+D F VLDEAD +L +GF ++ R+
Sbjct: 361 QNECITRGCHVVIATPGRLLDFVDRTFIT-FEDTRFVVLDEADRMLDMGFSEDM----RR 415
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
+ T EH +TL+FSAT +Q +A + + I V A + Q +
Sbjct: 416 IMTHVTMRPEH-QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV----GGACSDVKQTIY 470
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHG 438
+A+ + E+L ++ I+F+ T + DF + LSE K HG
Sbjct: 471 EVNKYAKRSKLI------EILSEQADGTIVFVETKRGADFLASFLSE---KEFPTTSIHG 521
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTA 498
Q +R + + FK + + + T V +RG+ +++HV +P+ + +Y+HRIGRT
Sbjct: 522 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTG 581
Query: 499 RAGESGAATIFLFREE 514
R G +G AT F E+
Sbjct: 582 RVGNNGRATSFFDPEK 597
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 162 bits (411), Expect = 1e-39
Identities = 134/423 (31%), Positives = 208/423 (48%), Gaps = 53/423 (12%)
Query: 156 MKFESLTPVQQRTIKPILTTEN-DVVAKAKTGTGKTLAFLAPLFQHLISTKLQ---NPLA 211
M + T +Q + +L T++ D +A+TG+GKTLA+L P+ Q LI
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIV 271
+ AVI+ PTR+L QI + KL NP S +IGG KS K NI++
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNN-NPLSHWIVSCNVIGGEK-KKSEKARIRKGVNILI 274
Query: 272 GTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIR 331
GTPGR+ D L+ A V + VLDE D L+ +GF+ L+ I L ++ ++ +
Sbjct: 275 GTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLS 334
Query: 332 ------TLLFSATMDHNVQELAATIMNKKDCLFIDTV---DKND--SEAHDSIDQKLVIT 380
T+L SATM V+ L+ + + KD L++ + + ND S+A + + Q+ V+
Sbjct: 335 IPSRKVTMLCSATMKDTVKRLSDSAL--KDALYLKSSIVEETNDGYSQAPEQLLQRYVVV 392
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSET------------------ 422
+V+L+ + S + K K I+FL VDF E
Sbjct: 393 PPKLR-LVSLVALLRSHVRSYK--KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKP 449
Query: 423 ------LSESLTKRID----IIKFHGKIDQKKRTKLVDRFKKTNHG---IFVCTDVGARG 469
+S + RID + + HG + Q+ RT ++ F + I +CTDV ARG
Sbjct: 450 DSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARG 509
Query: 470 MHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVI 529
+ P+V+ V Q P S +Y+HRIGRTARAG +GAA +FL +E ++++ L+ + I
Sbjct: 510 LDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANI 569
Query: 530 KNQ 532
Q
Sbjct: 570 LEQ 572
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 162 bits (411), Expect = 1e-39
Identities = 133/431 (30%), Positives = 218/431 (49%), Gaps = 66/431 (15%)
Query: 154 SAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL--ISTKLQNPLA 211
+ +K S+T VQ+++I P+L D + +++TG+GKTLA+ P+ Q L + +K+Q
Sbjct: 247 TVLKMSSMTSVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDG 305
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSL---TLIGGTNLDKSLKDLHTLNPN 268
A+++ PTR+LA+Q V+KL LK + + L+GG KS K N
Sbjct: 306 PYALVLVPTRELALQSFDTVQKL------LKPFTWIVPGVLMGGEK-RKSEKARLRKGIN 358
Query: 269 IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE 328
I++ TPGR+ D + +F + + V DEAD +L +GF+ ++++I LN N + ++
Sbjct: 359 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI---LNAVNAECQK 415
Query: 329 HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK------- 381
+ +L SAT+ V LA ++ D + I +DK +HD ++ K +
Sbjct: 416 R-QNVLLSATLTEGVTRLADISLH--DPVSISVLDK----SHDQLNPKDKAVQEVCPPPA 468
Query: 382 -----SFA--ESMVALIQSIESEL---------LQKKNF----KAILFLPTVKFVDF--- 418
SFA ES+ + + S+L LQK F K ++F + + V+F
Sbjct: 469 GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYS 528
Query: 419 -FSETLSE-----------SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
F +TL S + R+ ++ HG ++Q++RT + F + G+ +CTDV
Sbjct: 529 LFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVA 588
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL-RRDT 525
ARG+ P V + Q P+S YIHRIGRTAR G G++ + L E ++V+ L
Sbjct: 589 ARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKI 648
Query: 526 NVVIKNQEDYL 536
NV ED L
Sbjct: 649 NVSEIKMEDIL 659
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 162 bits (411), Expect = 1e-39
Identities = 134/444 (30%), Positives = 218/444 (48%), Gaps = 44/444 (9%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
+E+ ++ + K I F +T VQ + I +L + DVV ++ TGTGKT+AFLAP+
Sbjct: 6 IEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGK-DVVVQSPTGTGKTMAFLAPILS 64
Query: 200 HLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
+ K + V AV++TPTR+LA+QI L + IGG ++++
Sbjct: 65 CIYDGKGRGRPGVTAVVITPTRELALQIREVA--------GLFDVKCECFIGGMSIEEDY 116
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
K + +I VGTPGR+ +I+ + K F + VLDEAD LL GF+ +L + KL
Sbjct: 117 KRMKE-EFSIAVGTPGRLLEIVGKE-TKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKL 174
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
G LFSAT + +V +L+ + +++ ++E +++ +V
Sbjct: 175 PRNRVTG-------LFSATRNDSVDKLSRVFLRNPV-----SINVGNNEMPVALEYIVV- 221
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
S E ++ L+ + + I+F T VDFFS +S + +I K HGK
Sbjct: 222 --SPMEKLLVLMDIVTGR-------RCIVFFATCSEVDFFSGLVSRAGFG--NICKIHGK 270
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
I Q +R ++ + F + + G+ CTDV ARG+ F V+ V VP + +HR GRTAR
Sbjct: 271 ISQDERNRVYEEFFQRD-GLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTAR 329
Query: 500 AGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSIITNNPDF--- 556
G G + +F+ E +V+ L+ + + Y + ++ I S+I +P+
Sbjct: 330 NGSKGESVLFVMPNERAYVEFLKLKGIPAV--ESSYRMKSSLSYQDIKSMI--SPELLGL 385
Query: 557 -PEALKSIIGFYKGVQNEYRLNYK 579
+A S I YK Y L+YK
Sbjct: 386 SVKAFVSYIRSYKEHFVSYILDYK 409
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 162 bits (411), Expect = 1e-39
Identities = 125/436 (28%), Positives = 204/436 (46%), Gaps = 38/436 (8%)
Query: 106 QDENSDIEVFKSKSFNVTTLNPESFHEQVTIDSL------LEESLLDANVHKAISAMKFE 159
+DE ++E+F + + E + T ++ ++ L + ++ +++
Sbjct: 257 RDERLEVELFGVGNTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYD 316
Query: 160 SLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI--------------STK 205
TPVQ+ I PI+ D++A A+TG+GKT AFL P+ + S +
Sbjct: 317 KPTPVQKHAI-PIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRR 375
Query: 206 LQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTL 265
Q PL + ++ PTR+LA QI E KK + R L GG N + +++L
Sbjct: 376 KQYPLGL---VLAPTRELATQIFEEAKKFAYRS----RMRPAVLYGGNNTSEQMRELDR- 427
Query: 266 NPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQ 325
++IV TPGR+ D++ R G +++ F VLDEAD +L +GF+ ++ I +LN T
Sbjct: 428 GCHLIVATPGRLEDMITR-GKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTG 486
Query: 326 GEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAE 385
+ TL+FSAT +QELA+ ++ L + V +I V
Sbjct: 487 QRQ---TLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTI--LWVYEPDKRS 541
Query: 386 SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKR 445
++ L+ SI K+ ++F+ T K D E L + + HG QK+R
Sbjct: 542 YLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQC---NHPVTSIHGDRTQKER 598
Query: 446 TKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGA 505
+ + F+ + I V T V ARG+ P V+HV +P+ + Y+HRIGRT R G G
Sbjct: 599 EEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGV 658
Query: 506 ATIFLFREELKFVDEL 521
AT F + +L
Sbjct: 659 ATSFFNEKNRNICSDL 674
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 162 bits (411), Expect = 1e-39
Identities = 131/436 (30%), Positives = 213/436 (48%), Gaps = 78/436 (17%)
Query: 156 MKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST--KLQNPLAVK 213
+ LT VQQ+TI +L + DV+ +++TG+GKTLA+ PL + L ++Q V
Sbjct: 346 LSIRELTSVQQKTIPEVLQGK-DVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVL 404
Query: 214 AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSL---TLIGGTNLDKSLKDLHTLNPNII 270
A+++ PTR+L +Q ++KL +K Y + +L+GG + KS K NI+
Sbjct: 405 ALVIVPTRELVMQTYELIQKL------VKPYTWIVPGSLLGGESR-KSEKARLRKGINIL 457
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE-- 328
+GTPGR+ D L + + F +LDEAD LL++G++ ++ + +++ + E+
Sbjct: 458 IGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKE 517
Query: 329 --HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSID--QKLVITK--- 381
++ +L SAT+ VQ+LA + K+ L+ID D+ S A S D QK I
Sbjct: 518 LPQLQRMLLSATLTSQVQQLAGLTL--KNPLYIDNSDEAASAALKSKDGYQKETIEALLE 575
Query: 382 ------SFAESMVALIQSIE------------------SELLQK------KNFKAILFLP 411
+ E + ++ E S LL K K FKAI+F+
Sbjct: 576 VDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMS 635
Query: 412 TVKFVDFFSETLSESLTKRI----------------DI--------IKFHGKIDQKKRTK 447
T + V+F + L+E+LT+R+ DI K HG + Q +R
Sbjct: 636 TTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQG 695
Query: 448 LVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAAT 507
+ F+ + + TDV RG+ P ++ V Q P + +++HR+GRTARAG G A
Sbjct: 696 VFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAV 755
Query: 508 IFLFREELKFVDELRR 523
+FL E +FV L +
Sbjct: 756 LFLTPSEAQFVRHLEK 771
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 161 bits (407), Expect = 4e-39
Identities = 136/455 (29%), Positives = 215/455 (46%), Gaps = 44/455 (9%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+AI M F +T +Q +++ P+L D+V A+TG+GKTLAFL P + + +
Sbjct: 183 RAIKEMGFTEMTEIQSKSLTPLLKGR-DLVGAAQTGSGKTLAFLIPAVELINKLRFMPRN 241
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+I++PTR+L++Q +K+L + ++GG+N + L NI+
Sbjct: 242 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGL----VMGGSNRQVESEKLGK-GINIL 296
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
V TPGR+ D L +K++ ++DE D +L+IGF+ EL I L +
Sbjct: 297 VATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLL-------PKRR 349
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+T+LFSAT ++ L+ + K + +++ D D+ D ++Q ++ S +V
Sbjct: 350 QTMLFSATQTARIEALSKLAL-KSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 408
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLS----ESLTKRID--IIKFHGKIDQKK 444
KKN K K + FFS +S L ID + HGK Q K
Sbjct: 409 T-------FLKKNRKK-------KVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTK 454
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR-AGES 503
RT +F GI +CTDV ARG+ P V+ + Q P YIHR+GRTAR +G S
Sbjct: 455 RTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTS 514
Query: 504 GAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDM-ISSIITN----NPDFPE 558
G A + + EEL F+ L+ V N+ ++ Q + + + +I N E
Sbjct: 515 GHALLLMRPEELGFLRYLK--AAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKE 572
Query: 559 ALKSIIGFYKGVQNE--YRLNYKVAQNVLRSFSEL 591
A KS + Y Q + + +N Q V +SF L
Sbjct: 573 AFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFL 607
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 160 bits (406), Expect = 5e-39
Identities = 116/371 (31%), Positives = 190/371 (50%), Gaps = 24/371 (6%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD+++ IS KF TP+Q P L + DVV A+TG+GKT AF P HL++
Sbjct: 121 LDSSIQAEIS--KFPKPTPIQA-VAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND 177
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
Q ++ ++++PTR+LA QI + L + + GG D+ L
Sbjct: 178 --QKKRGIQVLVISPTRELASQIYDNLIVLTD----KVGMQCCCVYGGVPKDEQRIQLK- 230
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
++V TPGR+ D+L G+ V++ VLDEAD +L+ GF+ ++ I R+ +
Sbjct: 231 -KSQVVVATPGRLLDLLQE-GSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKR 288
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
Q TL+F+AT V+ELA+T MN + I D+ + + ++V +
Sbjct: 289 Q------TLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKE 342
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
++ L++ S KKN K ++F K L + ++ HG + Q++
Sbjct: 343 RKLLELLKKYHSG--PKKNEKVLIFALYKKEAARVERNLKYN---GYNVAAIHGDLSQQQ 397
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
RT+ ++ FK + + TDV ARG+ P+V+ V L P ++ +Y+HRIGRT RAG++G
Sbjct: 398 RTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTG 457
Query: 505 AA-TIFLFREE 514
A T+F +E+
Sbjct: 458 TAHTLFTEQEK 468
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 160 bits (405), Expect = 6e-39
Identities = 119/365 (32%), Positives = 184/365 (49%), Gaps = 25/365 (6%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-LQNPLA 211
I K+ TPVQ+ I PIL D++A A+TG+GKT AF P+ ++ + ++ P
Sbjct: 161 IQRCKYVKPTPVQRNAI-PILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
Query: 212 VK-----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
V+ AVI++PTR+LA QI E +K + + GGT +++ +++L
Sbjct: 220 VRGVYPLAVILSPTRELACQIHDEARKFSYQT----GVKVVVAYGGTPVNQQIRELER-G 274
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+I+V TPGR+ND+L+R G + V F LDEAD +L +GF+ ++ I +++ + G
Sbjct: 275 VDILVATPGRLNDLLER-GRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM-DMPPPG 332
Query: 327 EEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL--VITKSFA 384
+T+LFSAT +Q LA+ ++ L + V + D I Q++ V
Sbjct: 333 VR--QTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSST----DLIVQRVEFVHDSDKR 386
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
++ L+ + Q K ++F+ T K D L HG Q++
Sbjct: 387 SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLC---INGFPATTIHGDRSQQE 443
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
R + FK I V TDV ARG+ P V HV +P + +Y+HRIGRT RAG SG
Sbjct: 444 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
Query: 505 AATIF 509
AT F
Sbjct: 504 LATAF 508
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 160 bits (404), Expect = 8e-39
Identities = 124/427 (29%), Positives = 203/427 (47%), Gaps = 67/427 (15%)
Query: 156 MKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI--STKLQNPLAVK 213
M FE+ T VQ + I P++ + DV+ A TGTGKT+A+LAPL HL S K+
Sbjct: 48 MGFEAPTLVQAQAI-PVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106
Query: 214 AVIVTPTRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP--NII 270
A+++ PTR+L +Q+ ++KL + + + Y ++GG +K K+ L +I+
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFHWIVPGY----VMGG---EKKAKEKARLRKGISIL 159
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF-NTQGEE- 328
+ TPGR+ D L + K++ + + DEAD++L++G+ E+ I + L N QGEE
Sbjct: 160 IATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEED 219
Query: 329 -------HIRTLLFSATMDHNVQELAATIMNK-----------KDCLFIDTVDKNDSEAH 370
+ LL SAT++ V +LA ++ + L I++ DS+A
Sbjct: 220 DIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAE 279
Query: 371 DSIDQKLVITKSFAES-------------------MVALIQSIESELLQKKNFKAILFLP 411
D + +E +VAL+ +++ ++ + K ++F
Sbjct: 280 DMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFS 339
Query: 412 TVKFVDFFSETLSE---------------SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTN 456
T VDF LSE L + + HG ++Q+ R FK
Sbjct: 340 TRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEK 399
Query: 457 HGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
+ + TDV ARG+ FP V + Q P Y+HR+GRTAR GE G A +FL E+
Sbjct: 400 QAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEID 459
Query: 517 FVDELRR 523
++ EL++
Sbjct: 460 YLKELKK 466
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 159 bits (403), Expect = 1e-38
Identities = 122/447 (27%), Positives = 223/447 (49%), Gaps = 34/447 (7%)
Query: 131 HEQVTIDSLLEES--LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTG 188
+E++ ++ + S L K + ++ +T +Q++TI L + DV+ AKTG+G
Sbjct: 60 YEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGK-DVLGAAKTGSG 118
Query: 189 KTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT 248
KTLAFL P+ + L + + + +I++PTR+LA Q ++K+ + + + +
Sbjct: 119 KTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH----DFSAGL 174
Query: 249 LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
+IGG +L + ++ N NI+V TPGR+ +D + + D+ VLDEAD +L +GF
Sbjct: 175 IIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 232
Query: 309 QTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
++ + L + +TLLFSAT +V++LA + + +++ K +
Sbjct: 233 ADTMNAVIENLPKKR-------QTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTP 285
Query: 369 AHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLT 428
A +++Q ++ + + ++++ S L+KK+ I+F + K V + L
Sbjct: 286 A--TLEQNYIVCE--LQQKISVLYSFLRSHLKKKS---IVFFSSCKEVQYLYRVFCR-LR 337
Query: 429 KRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLP 488
+ I+ HG+ Q +R ++ + F + + TD+ ARG+ FP+V V Q P
Sbjct: 338 PGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDAN 397
Query: 489 NYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK----NQEDYLNQDKENFD 544
YIHR GRTAR E G A + L E V +L + V +K N E ++ K+
Sbjct: 398 TYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQ-KKVPVKEIKINPEKLIDVQKK--- 453
Query: 545 MISSIITNNPDFPE-ALKSIIGFYKGV 570
+ SI+ + D E A + + + + V
Sbjct: 454 -LESILAQDQDLKERAQRCFVSYVRSV 479
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 159 bits (403), Expect = 1e-38
Identities = 125/412 (30%), Positives = 204/412 (49%), Gaps = 29/412 (7%)
Query: 110 SDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTI 169
S +E+++ K VTT +T +S S L + + + + F S TP+Q +T
Sbjct: 412 SPVEIYR-KQHEVTTTGENIPAPYITFES----SGLPPEILRELLSAGFPSPTPIQAQTW 466
Query: 170 KPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIAS 229
PI D+VA AKTG+GKTL +L P F L + + +I+ PTR+LA QI
Sbjct: 467 -PIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQD 525
Query: 230 EVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF 289
E + + + L GG LK+L +I+V TPGR+NDIL+ F
Sbjct: 526 EALRFGRSS----RISCTCLYGGAPKGPQLKELER-GADIVVATPGRLNDILEMKMID-F 579
Query: 290 KDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAAT 349
+ V VLDEAD +L +GF+ ++ I +NE + + TL+++AT V+++A+
Sbjct: 580 QQVSLLVLDEADRMLDMGFEPQIRKI---VNEIPPRRQ----TLMYTATWPKEVRKIASD 632
Query: 350 IMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILF 409
++ + I VD + A+ +I Q + + E L Q + S Q++ K I+F
Sbjct: 633 LLVNPVQVNIGRVD--ELAANKAITQYVEVVPQM-EKERRLEQILRS---QERGSKVIIF 686
Query: 410 LPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARG 469
T + D L+ S+ + + HG Q +R ++++F+ + + TDV ARG
Sbjct: 687 CSTKRLCDH----LARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARG 742
Query: 470 MHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+ + V PT + +Y+HRIGRT RAG +G A F ++ K+ +L
Sbjct: 743 LDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDL 794
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 159 bits (403), Expect = 1e-38
Identities = 115/364 (31%), Positives = 185/364 (50%), Gaps = 24/364 (6%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIV 217
F + TP+Q ++ PI D+VA AKTG+GKTL +L P F HL + + + +++
Sbjct: 178 FSAPTPIQAQSW-PIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 218 TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI 277
+PTR+LA QI E K + + L GG L+DL +I+V TPGR+
Sbjct: 237 SPTRELATQIQEEAVKFGRSS----RISCTCLYGGAPKGPQLRDLER-GADIVVATPGRL 291
Query: 278 NDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSA 337
NDIL+ + + + VLDEAD +L +GF+ ++ I + E T+ + TL+++A
Sbjct: 292 NDILEMRRIS-LRQISYLVLDEADRMLDMGFEPQIRKI---VKEIPTKRQ----TLMYTA 343
Query: 338 TMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESE 397
T V+++AA ++ + I VD + A+ SI Q + + E L Q + S
Sbjct: 344 TWPKGVRKIAADLLVNPAQVNIGNVD--ELVANKSITQHIEVVAPM-EKQRRLEQILRS- 399
Query: 398 LLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNH 457
Q+ K I+F T + D L+ +LT++ HG Q +R ++++F+
Sbjct: 400 --QEPGSKVIIFCSTKRMCD----QLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRT 453
Query: 458 GIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKF 517
+ V TDV ARG+ + V P + +Y+HRIGRT RAG +G A F ++ K
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513
Query: 518 VDEL 521
+L
Sbjct: 514 ASDL 517
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 159 bits (402), Expect = 1e-38
Identities = 123/401 (30%), Positives = 201/401 (49%), Gaps = 37/401 (9%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL--- 201
LD + + I F TPVQ+ +I PI+T D++A A+TG+GKT FL PLF L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSI-PIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRS 219
Query: 202 ----ISTKLQNPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSY-RSLTLIGG 252
+ K Q+ + K A+++ PTR+LA QI E +K + +S+ R + GG
Sbjct: 220 GPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKF-----TYRSWVRPCVVYGG 274
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTEL 312
+ ++++ +++V TPGR+ND+L+R G ++ + VLDEAD +L +GF+ ++
Sbjct: 275 APIGNQMREVDR-GCDLLVATPGRLNDLLER-GKVSLANIKYLVLDEADRMLDMGFEPQI 332
Query: 313 SLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDS 372
I + E + E+ +TL+FSAT ++Q LA ++ L + V ++
Sbjct: 333 RHI---VEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTS----EN 385
Query: 373 IDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID 432
I Q+++ + AL+ + +E ++F+ T + D ++ L + +
Sbjct: 386 ITQRILYVDDM-DKKSALLDLLSAE----HKGLTLIFVETKRMADQLTDFL---IMQNFK 437
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
HG Q +R + + FK I V T V ARG+ P+V HV +P+ + +Y+H
Sbjct: 438 ATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVH 497
Query: 493 RIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQE 533
RIGRT RAG +G AT F V L N NQE
Sbjct: 498 RIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEA--NQE 536
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 159 bits (402), Expect = 1e-38
Identities = 120/376 (31%), Positives = 185/376 (48%), Gaps = 31/376 (8%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTR 221
TPVQ + IL DV+ A+TG+GKT AF P+ L ++P V A++VTPTR
Sbjct: 82 TPVQTHCVPKILAGR-DVLGLAQTGSGKTAAFALPILHRLA----EDPYGVFALVVTPTR 136
Query: 222 DLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDIL 281
+LA Q+A + K L C + R ++GG ++ L + P+I++ TPGRI +L
Sbjct: 137 ELAFQLAEQFKALGSC----LNLRCSVIVGGMDMLTQTMSLVS-RPHIVITTPGRIKVLL 191
Query: 282 DRVG--AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATM 339
+ F F VLDEAD +L +GFQ EL I + L + +TLLFSATM
Sbjct: 192 ENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR-------QTLLFSATM 244
Query: 340 DHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELL 399
N+Q L NK F + + + D++ Q+ + A+ + + I S++
Sbjct: 245 TSNLQALLEHSSNK--AYFYEAYE--GLKTVDTLTQQFIFEDKDAKELYLV--HILSQME 298
Query: 400 QKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGI 459
K A++F+ T + S L E ++ I H Q R + +FK I
Sbjct: 299 DKGIRSAMIFVSTCRTCQRLSLMLDEL---EVENIAMHSLNSQSMRLSALSKFKSGKVPI 355
Query: 460 FVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVD 519
+ TDV +RG+ P+V+ V +P +Y+HR+GRTARAG G A + ++K +
Sbjct: 356 LLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIH 415
Query: 520 ELRRDTNVVIKNQEDY 535
++ + V K E Y
Sbjct: 416 KIEEE---VGKKMEPY 428
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 159 bits (401), Expect = 2e-38
Identities = 113/381 (29%), Positives = 194/381 (50%), Gaps = 25/381 (6%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
KAI+AM F+ TP+Q+ I P+ D+ A A TGTGKT AF P+ + LI Q P+
Sbjct: 231 KAITAMGFKQPTPIQKACI-PVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV 289
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQ-CNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNI 269
+ +++ PTR+L IQ+ S ++L Q CN + + +GG ++ KS + P+I
Sbjct: 290 T-RVLVLVPTRELGIQVHSVTRQLAQFCNIT-----TCLAVGGLDV-KSQEAALRAAPDI 342
Query: 270 IVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH 329
++ TPGR+ D L + + ++ +LDEAD +L F+ ++ I R + H
Sbjct: 343 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH-------H 395
Query: 330 IRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVA 389
+T+LFSATM V++LA+ + +F+++ +++ + Q+ + + E
Sbjct: 396 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDRE 451
Query: 390 LIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLV 449
I + + L + +LF T K L + + + HG + Q +R + +
Sbjct: 452 AI--VAALLTRTFTDHVMLFTQTKKQAHRMHILLG---LMGLQVGELHGNLSQTQRLEAL 506
Query: 450 DRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF 509
RFK I V TDV ARG+ V+ V +P ++ +Y+HR+GRTARAG +G +
Sbjct: 507 RRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSL 566
Query: 510 LFREELKFVDELRRDTNVVIK 530
+ +E K + E+ + +K
Sbjct: 567 VGEDERKMLKEIVKAAKAPVK 587
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 158 bits (400), Expect = 2e-38
Identities = 134/460 (29%), Positives = 221/460 (47%), Gaps = 55/460 (11%)
Query: 113 EVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPI 172
+V KSKS + + E+ +E + +S E +L+ + +A + + TP+Q + I P
Sbjct: 99 KVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELI-QACKNLNYSKPTPIQSKAIPPA 157
Query: 173 LTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVK 232
L +D++ A+TG+GKT AF P+ L Q P A I+ PTR+LA QI
Sbjct: 158 LEG-HDIIGLAQTGSGKTAAFAIPILNRLWHD--QEPYY--ACILAPTRELAQQIKETFD 212
Query: 233 KLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDV 292
L SL RS ++GG N+ +DL P+II+ TPGR+ D L+ + +
Sbjct: 213 SLG----SLMGVRSTCIVGGMNMMDQARDLMR-KPHIIIATPGRLMDHLENTKGFSLRKL 267
Query: 293 DFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELA-ATIM 351
F V+DEAD LL + F ++ R L TQ T LFSATM + +L A++
Sbjct: 268 KFLVMDEADRLLDMEFGP---VLDRILKIIPTQERT---TYLFSATMTSKIDKLQRASLT 321
Query: 352 NKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLP 411
N C N + D++ Q L++ ++ + + +E + K I+F
Sbjct: 322 NPVKCAV-----SNKYQTVDTLVQTLMVVPGGLKNTYLIY--LLNEFIGKT---MIIFTR 371
Query: 412 TVKFVDFFSETLSESLTKRIDIIKF-----HGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
T + +E L+ ++++F HG ++Q +R +D FK I V TDV
Sbjct: 372 T--------KANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 423
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR--- 523
ARG+ PSV+ V +P +YIHR+GRTARAG SG + + + +L+ + +
Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLG 483
Query: 524 --------DTNVVIKNQEDYLNQDKENFDMISSIITNNPD 555
D N+++ ++ + DK N +++ + N +
Sbjct: 484 KKLPKESVDKNIILTLRD---SVDKANGEVVMEMNRRNKE 520
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 158 bits (400), Expect = 2e-38
Identities = 137/460 (29%), Positives = 218/460 (46%), Gaps = 66/460 (14%)
Query: 107 DENSDIEVFK----SKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLT 162
DE+ D +V K +K N+ ++P + E + + L + +++ + F T
Sbjct: 142 DEDVDEDVLKENVFNKDINIDDISPVNLPEWTNL------APLSMTILQSLQNLNFLRPT 195
Query: 163 PVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRD 222
+Q+++I P++ DV+ KA TG+GKTLA+ P+ + LIS Q ++I TPTR+
Sbjct: 196 EIQKKSI-PVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRE 254
Query: 223 LAIQIASEVKKLQQCNPSL--KSYRSLTLIGGTNLDKSLKDLHTLNP-NIIVGTPGRIND 279
LA Q+ +KK+ C P L Y L+L GG ++ K + L N I++ TPGR +
Sbjct: 255 LAHQVTDHLKKI--CEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLE 312
Query: 280 IL--DRVGAKYFKDVDFKVLDEADTLLQIGFQTELS------LISRKLNEFNTQGEEHI- 330
+L D K F V+ +LDEAD LLQ G E L+ R+ N N++G I
Sbjct: 313 LLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIW 372
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+TL+FSAT ++ + ++ KD F KN+ + +++ Q L+ F V +
Sbjct: 373 QTLIFSATFSIDLFDKLSSSRQVKDRRF-----KNNEDELNAVIQHLMSKIHFNSKPVII 427
Query: 391 IQSIESELLQKKNFKAILFLPTVK------FVDFFSET------LSESLTK--------R 430
+ ES++ + I P + F+ F T +S+ K
Sbjct: 428 DTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLG 487
Query: 431 IDIIKFHGKIDQKKRTKLVDRFKK-------TNHG---------IFVCTDVGARGMHFPS 474
I + H + QK R K ++RFK+ NH + + +DV ARG+ P
Sbjct: 488 IPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPG 547
Query: 475 VEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREE 514
V+HV +P S YIHR GRTARAG G + + +E
Sbjct: 548 VQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 158 bits (400), Expect = 2e-38
Identities = 142/482 (29%), Positives = 230/482 (47%), Gaps = 47/482 (9%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ +D + K + F S+ VQQ+ I P+ +D++ ++TGTGKTLAFL P Q
Sbjct: 7 EDLKIDQRIEKGLRENGFVSMKEVQQKVI-PMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT---LIGGTNLDK 257
L+S + +++TPTR+LA+QI + ++ + Y L+ ++GG +
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAK-------YTVLSTGLIMGGLEAED 118
Query: 258 SLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISR 317
L ++ + NI+V TPGR+ L +V +LDEAD ++++GF+ L
Sbjct: 119 ELLKVNQM--NILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVL----E 172
Query: 318 KLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL 377
+ E+ Q ++ TLLFSAT + A I+ +D I + + + Q
Sbjct: 173 DILEYIPQKKQ---TLLFSAT----PKASTARILKLEDPRIISIYKEEGFPS--QLRQYF 223
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
+ ++ + I + + + K I+F T K V F L E L R I
Sbjct: 224 YMMRTGDK-----INYLHTFIGSNPEVKGIVFFSTCKEVKFHC-LLFERLKLRNRIFCLS 277
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
G + QK+R + RF K +GI CTD+G+RG+ FP V+ V Q P ++ Y+HR+GRT
Sbjct: 278 GGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRT 337
Query: 498 ARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSIITNNPD-- 555
AR E G + ++L E K + ++++ IK QE +DK IS IT P
Sbjct: 338 ARNSERGESYVYLVHGEEKLLTDIQK--KGWIKKQEGM--EDKG----ISEEITEGPGVQ 389
Query: 556 ---FPEALKSIIGFYKGVQNEYRLNYKVAQNVLRSFSELHSDSSMLLRFRPSEINNFFSN 612
+K ++ K + NEY Y V +FS S ++R P+ +F +
Sbjct: 390 IRCINNMVKRLVRSSKEL-NEYCRKYLVTYEKFLTFSSKRY-SEGVIRKIPALYEHFGVS 447
Query: 613 RD 614
RD
Sbjct: 448 RD 449
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 157 bits (396), Expect = 7e-38
Identities = 120/378 (31%), Positives = 190/378 (49%), Gaps = 25/378 (6%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
+L AN SA F + +P+Q ++ PI D+VA AKTG+GKTL +L P F HL
Sbjct: 236 VLPANGRMVYSA-GFSAPSPIQAQSW-PIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQR 293
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ + ++++PTR+LA QI E K + + L GG LK++
Sbjct: 294 IHNDSRMGPTILVLSPTRELATQIQVEALKFGKSS----KISCACLYGGAPKGPQLKEIE 349
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFN 323
+I+V TPGR+NDIL+ + V + VLDEAD +L +GF+ ++ I +NE
Sbjct: 350 R-GVDIVVATPGRLNDILEMKRISLHQ-VSYLVLDEADRMLDMGFEPQIRKI---VNEVP 404
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
T+ + TL+++AT V+++AA ++ + I VD + A+ SI Q + +
Sbjct: 405 TKRQ----TLMYTATWPKEVRKIAADLLVNPAQVNIGNVD--ELVANKSITQTIEVLAPM 458
Query: 384 AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
E L Q + S Q+ K I+F T + D L+ +LT+ HG Q
Sbjct: 459 -EKHSRLEQILRS---QEPGSKIIIFCSTKRMCD----QLARNLTRTFGAAAIHGDKSQA 510
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
+R ++++F+ + V TDV ARG+ + V P + +Y+HRIGRT RAG +
Sbjct: 511 ERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGAT 570
Query: 504 GAATIFLFREELKFVDEL 521
G A F ++ K +L
Sbjct: 571 GLAYTFFGDQDAKHASDL 588
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 156 bits (394), Expect = 1e-37
Identities = 114/383 (29%), Positives = 190/383 (48%), Gaps = 45/383 (11%)
Query: 156 MKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVK-- 213
+ F SLTP+Q + + P + + DV+ +KTG+GKT+++L PL + + K Q PL+
Sbjct: 274 LHFGSLTPIQSQAL-PAIMSGRDVIGISKTGSGKTISYLLPLLRQV---KAQRPLSKHET 329
Query: 214 ---AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+I+ PTR+LA+QI EV K + + S+ RS+ GG+ + K + DL I+
Sbjct: 330 GPMGLILAPTRELALQIHEEVTKFTEADTSI---RSVCCTGGSEMKKQITDLKR-GTEIV 385
Query: 271 VGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE 328
V TPGR DIL K K + F V+DEAD L +GF+ +++ I + +
Sbjct: 386 VATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDK----- 440
Query: 329 HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMV 388
+ +LFSAT + ++ A +++ + I++ ++++ QK I S E
Sbjct: 441 --QCVLFSATFPNKLRSFAVRVLHSPISITINS----KGMVNENVKQKFRICHSEDEKFD 494
Query: 389 ALIQSI----------------ESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID 432
L+Q I +S +++ + KAI+F+ + DF S+ L L I
Sbjct: 495 NLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKL---LNAGIV 551
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
H ++R +++FK+ + I +CT+V +RG++ P V V + Y+H
Sbjct: 552 TCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVH 611
Query: 493 RIGRTARAGESGAATIFLFREEL 515
GRTAR SG A L +EL
Sbjct: 612 TTGRTARGSRSGTAITLLLHDEL 634
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 156 bits (394), Expect = 1e-37
Identities = 123/366 (33%), Positives = 178/366 (48%), Gaps = 38/366 (10%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLF------QHLISTKL 206
I K+ TPVQ+ I PIL E D++A A+TG+GKT AF P+ QH+ +
Sbjct: 166 IRRCKYVRPTPVQRHAI-PILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
Query: 207 QNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
+ AVI++PTR+LA QI E KK + + GGT + + L++L
Sbjct: 225 SRAVYPFAVILSPTRELACQIHDEAKKFSYQT----GVKVVVAYGGTPIHQQLRELER-G 279
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+I+V TPGR+ND+L+R + + F LDEAD +L +GF+ ++ RK+ E
Sbjct: 280 CDILVATPGRLNDLLERARVS-MQMIRFLALDEADRMLDMGFEPQI----RKIVEQMDMP 334
Query: 327 EEHIR-TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL-VITKSFA 384
+R T+LFSAT +Q LAA M+ L + V + D I Q++ + +S
Sbjct: 335 PRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST----DLITQRVEFVQESDK 390
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLT-KRIDIIKFHGKIDQK 443
S + + + E K A +TL L HG Q+
Sbjct: 391 RSHLMDLLHAQRETQDKTKRGA--------------DTLENWLCMNEFPATSIHGDRTQQ 436
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
+R + FK I V TDV ARG+ P V HV +P + +Y+HRIGRT RAG+S
Sbjct: 437 EREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 496
Query: 504 GAATIF 509
G AT F
Sbjct: 497 GIATAF 502
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 156 bits (394), Expect = 1e-37
Identities = 123/400 (30%), Positives = 194/400 (47%), Gaps = 33/400 (8%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L KA++ KF T VQ+ +I P L + DV+ A TG+GKTLAFL P+ +HL
Sbjct: 79 LSKKTQKALAESKFVHPTQVQRDSIGPALQGK-DVLGAAITGSGKTLAFLIPVLEHLFMN 137
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
K V A+I++PTR+LA QI +KK+ + + + + +IGG NL +
Sbjct: 138 KWSRTDGVGAIIISPTRELAYQIFETLKKVGKHH----DFSAGLIIGGKNLKFERTRMDQ 193
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
N I++ TPGR+ +D ++ VLDEAD L +GFQ L+ I
Sbjct: 194 CN--ILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVR- 250
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK------LV 378
+TLLFSAT + VQ+LA +N KD +++ E + +K L
Sbjct: 251 ------QTLLFSATQTNTVQDLAR--LNLKDPVYVGYGGATPREEPSASTKKTPNTAVLA 302
Query: 379 ITKSFAESMVALIQSIESELLQKKNF-------KAILFLPTVKFVDFFSETLSESLTKRI 431
+ + +S V L ++E ++ +F K I+F+ + K + E + L
Sbjct: 303 VPELLQQSYVVL--NLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCK-LRPGS 359
Query: 432 DIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
++ +G + Q +R + + F + +H + TDV +RG+ FP+V V QL P + YI
Sbjct: 360 PLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYI 419
Query: 492 HRIGRTARAGESGAATIFLF-REELKFVDELRRDTNVVIK 530
HR GR+AR G + L EE + L+ N+ I+
Sbjct: 420 HRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNIDIR 459
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 154 bits (390), Expect = 3e-37
Identities = 130/439 (29%), Positives = 215/439 (48%), Gaps = 38/439 (8%)
Query: 117 SKSFN-VTTLNPESFHEQVTID-SLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILT 174
SK++N +TL E H +D S L + ++S F P+Q I P +
Sbjct: 99 SKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVI-PEAS 157
Query: 175 TENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKL 234
D++ KA TG+GKTLAF P+ +H + + V+A++V PTR+LA QI + +
Sbjct: 158 IGFDIIGKADTGSGKTLAFGIPILEHCLRNV--DAKYVQALVVAPTRELAHQICQHFELI 215
Query: 235 QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAK-YFKDVD 293
+ +P++ R +++ GG + K + L+ +P+++V TPGR+ +++ FK +
Sbjct: 216 KP-SPNI---RVMSITGGLAVQKQQRLLNK-HPHVVVATPGRLWSVINENNLTGNFKKIK 270
Query: 294 FKVLDEADTLLQIGFQTELSLISRKL-NEFNTQGEEHIRTLLFSATMDHNVQE-----LA 347
VLDEAD LLQ ELS + L N +TQ + T +FSAT D +Q+ +
Sbjct: 271 CLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQ----TFIFSATFDEGLQQRLKKNMK 326
Query: 348 ATIMNK---------KDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESEL 398
I K K+ F D+ ++ +++ + E A L
Sbjct: 327 GNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVL--EGLIECAPAEKDLYLYYL 384
Query: 399 LQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHG 458
+ + K ++F ++ + + L+E ++ H ++DQKKR + +++FK G
Sbjct: 385 IMRYPGKTMVFANGIEDIKRITPFLNEL---KVPSYPLHAQLDQKKRLQSLEKFKNNPKG 441
Query: 459 IFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFV 518
+ VCTDV ARG+ PSV HV VP + Y+HR GRTARA E G + + +EL
Sbjct: 442 VLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKEL--- 498
Query: 519 DELRRDTNVVIKNQEDYLN 537
+L+R + K E ++N
Sbjct: 499 SQLKRLCYRLKKKIETFIN 517
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 154 bits (388), Expect = 6e-37
Identities = 118/400 (29%), Positives = 199/400 (49%), Gaps = 39/400 (9%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EES L + + KA+ ++ +P+Q I P+ + DV+ A+TG+GKT AF+ P+ +
Sbjct: 316 EESKLTSELLKAVERAGYKKPSPIQMAAI-PLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374
Query: 201 LI-------STKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGT 253
+ + + P AV ++ PTR+LA QI E K +R +++GG
Sbjct: 375 ISRLPPMSEENETEGPYAV---VMAPTRELAQQIEEETVKFAH----YLGFRVTSIVGGQ 427
Query: 254 NLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELS 313
++++ + T I++ TPGR+ D L+R A ++ VLDEAD ++ +GF+ +++
Sbjct: 428 SIEEQGLKI-TQGCEIVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVA 485
Query: 314 LISRKLNEFNTQGEE----------HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVD 363
+ + N + E + T +FSATM V+ LA + + I T
Sbjct: 486 GVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAG 545
Query: 364 KNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETL 423
K D I Q +++ K +E L Q + EL +K AI+F+ T K D ++ L
Sbjct: 546 KTT----DLISQHVIMMKE-SEKFFRL-QKLLDELGEKT---AIVFVNTKKNCDSIAKNL 596
Query: 424 SESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCV 483
++ + + HG Q++R ++ F+ + + V TDV RG+ P V HV +
Sbjct: 597 DKAGYR---VTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDM 653
Query: 484 PTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
P + Y HRIGRT RAG+SG AT FL + + +L++
Sbjct: 654 PKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQ 693
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 153 bits (387), Expect = 7e-37
Identities = 131/504 (25%), Positives = 236/504 (45%), Gaps = 40/504 (7%)
Query: 107 DENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQ 166
DE D E K+ + T E+ + + L L V K ++++ + +P+Q
Sbjct: 203 DEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLS---LSRPVLKGLASLGYVKPSPIQS 259
Query: 167 RTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQ 226
TI PI D++A A TG+GKT AF+ P+ + L+ K + + +++ PTR+LAIQ
Sbjct: 260 ATI-PIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY-KPAKIASTRVIVLLPTRELAIQ 317
Query: 227 IASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGA 286
+A K++ + + + +GG NL + + L + P+I++ TPGR D + +
Sbjct: 318 VADVGKQIARFVSGITFGLA---VGGLNLRQQEQMLKS-RPDIVIATPGRFIDHIRNSAS 373
Query: 287 KYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQEL 346
V+ V+DEAD +L+ GFQ EL+ I L + + LLFSATM+ ++ L
Sbjct: 374 FNVDSVEILVMDEADRMLEEGFQDELNEIMGLL-------PSNRQNLLFSATMNSKIKSL 426
Query: 347 AATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKA 406
+ + K + ID K A + Q+ V + AL+ ++ +L +
Sbjct: 427 VSLSLKKPVRIMIDPPKK----AATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRI 482
Query: 407 ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
++F+ + + + + + HG + Q++R V++FK + +CTD+
Sbjct: 483 VVFVARKETAHRLRIIMG---LLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLA 539
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF---------LFREELKF 517
+RG+ P +E V +P S Y+HR+GRTARAG G + F + R +K
Sbjct: 540 SRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKS 599
Query: 518 VDELRRDT-NVVIKNQEDYLNQDKEN------FDMISSIITNNPDFPEALKSIIGFYKGV 570
V+E + T + D++ ++ N D I I+ + E L++ + KG
Sbjct: 600 VEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKG- 658
Query: 571 QNEYRLNYKVAQNVLRSFSELHSD 594
+N + ++ R++ + SD
Sbjct: 659 ENMLKHKKEIQARPRRTWFQSESD 682
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 153 bits (386), Expect = 1e-36
Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 41/392 (10%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD + + I +F TPVQ+ ++ PI+ D++A A+TG+GKT FL P+ T
Sbjct: 149 LDGLLLENIKLARFTKPTPVQKYSV-PIVANGRDLMACAQTGSGKTGGFLFPVLSESFKT 207
Query: 205 K-----------LQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRS----LTL 249
Q AVI+ PTR+LA QI E KK +YRS +
Sbjct: 208 GPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKF--------TYRSWVKACVV 259
Query: 250 IGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQ 309
GG+ + L+++ +++V TPGR+ND+L+R G +V + VLDEAD +L +GF+
Sbjct: 260 YGGSPIGNQLREIER-GCDLLVATPGRLNDLLER-GKISLANVKYLVLDEADRMLDMGFE 317
Query: 310 TELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEA 369
++ I + GE +TL+FSAT ++Q LA ++ D +F+ +V + S +
Sbjct: 318 PQIRHIVEDC-DMTPVGER--QTLMFSATFPADIQHLARDFLS--DYIFL-SVGRVGSTS 371
Query: 370 HDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
+ + L + +S + + S ++ L ++F+ T + D ++ L + +
Sbjct: 372 ENITQKVLYVENQDKKSALLDLLSASTDGL------TLIFVETKRMADQLTDFL---IMQ 422
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
HG Q +R + + F+ + V T V ARG+ P+V HV +P+ + +
Sbjct: 423 NFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDD 482
Query: 490 YIHRIGRTARAGESGAATIFLFREELKFVDEL 521
Y+HRIGRT RAG +G AT F E V L
Sbjct: 483 YVHRIGRTGRAGNTGLATAFFNSENSNIVKGL 514
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 152 bits (384), Expect = 2e-36
Identities = 123/419 (29%), Positives = 209/419 (49%), Gaps = 27/419 (6%)
Query: 118 KSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTEN 177
K N++ +P+S + I L+ LD + ++ TP+Q T P L
Sbjct: 148 KKHNISFADPKSSENLLPI---LQFDELDVSAKLREGLKNYKEPTPIQAATW-PYLLAGR 203
Query: 178 DVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQC 237
DVV A+TG+GKT+AF P Q+L N + ++V+PTR+LAIQ + L Q
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLS-DNKSVPRVLVVSPTRELAIQTYENLNSLIQG 262
Query: 238 NPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVL 297
+ +++ + GG KS + N ++I+GTPGR+ D+++ G+ V + VL
Sbjct: 263 T----NLKAVVVYGGA--PKSEQARAAKNASVIIGTPGRLLDLIND-GSIDCSQVGYLVL 315
Query: 298 DEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCL 357
DEAD +L GF+ ++ I + G +T+ FSAT +V+ LAAT + KD +
Sbjct: 316 DEADRMLDTGFEQDIRNIISHTPDPTRNGSR--QTVFFSATWPESVRALAATFL--KDPV 371
Query: 358 FIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQK--KNFKAILFLPTVKF 415
I T+ ++ A +I Q + I S ++ ++ + L K+ K ++F+ K
Sbjct: 372 KI-TIGSDELAASQNITQIVEILDD-PRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKE 429
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
+ + +L ++ +++ HG + Q R + ++ FK + V TDV ARG+ P V
Sbjct: 430 ----AARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKV 485
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQED 534
+ V + P ++ +Y+HRIGRT RA G A F ++ EL NV+ + ++D
Sbjct: 486 QLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGEL---VNVLRQAKQD 541
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 152 bits (384), Expect = 2e-36
Identities = 119/411 (28%), Positives = 211/411 (50%), Gaps = 25/411 (6%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTR 221
T +Q+ TI LT +DVV AKTG+GKTLA + P+ + L K + A+I++PTR
Sbjct: 100 TEIQRDTIAYSLTG-SDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTR 158
Query: 222 DLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDIL 281
+LA+Q S + + + + +IGG+ D + + NIIV TPGR+ +
Sbjct: 159 ELALQTFSTINAVGAHH----GFSCGLVIGGS--DVAFERNRISGINIIVCTPGRLLQHM 212
Query: 282 DRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDH 341
D + VLDEAD +L +GF +L+ I L +TLLFSAT
Sbjct: 213 DENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNL-------PAERQTLLFSATQTR 265
Query: 342 NVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQK 401
NV++L N D +F+ + + D++ Q VI + + AL IE+ +K
Sbjct: 266 NVKDLCRVCTN--DPVFVSVHENASAATPDNLKQSYVIVEE-EHKINALWSFIEAH--RK 320
Query: 402 KNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFV 461
K K+++F+ + K F +E S+ L + ++ G ++QKKR + +F ++ + +
Sbjct: 321 K--KSLVFVSSCKQARFLTEAFSQ-LRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLI 377
Query: 462 CTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLF-REELKFVDE 520
TDV +RG+ F ++ V Q+ P + +YIHR+GR+AR +SG + + + +E + +
Sbjct: 378 ATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGK 437
Query: 521 LRRDTNVVIKNQEDYLNQDKENFDMISSIITNNPDFPE-ALKSIIGFYKGV 570
L + ++ I+ + + + + + +I+ + + E A KSI+ + + +
Sbjct: 438 LEKH-SIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSI 487
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 151 bits (382), Expect = 3e-36
Identities = 124/400 (31%), Positives = 198/400 (49%), Gaps = 45/400 (11%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
D L+ESLL + I A FE + +QQR I P + DV+A+A++GTGKT F
Sbjct: 37 DMNLKESLL-----RGIYAYGFEKPSAIQQRAIIPCIKGY-DVIAQAQSGTGKTATFAIS 90
Query: 197 LFQHL-ISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTL---IGG 252
+ Q L I K +A+++ PTR+LA QI Q+ +L Y T IGG
Sbjct: 91 ILQQLEIEFK-----ETQALVLAPTRELAQQI-------QKVILALGDYMGATCHACIGG 138
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQT 310
TN+ ++ L P+I+VGTPGR+ D+L+R +Y K + VLDEAD +L GF+
Sbjct: 139 TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR---RYLSPKWIKMFVLDEADEMLSRGFKD 195
Query: 311 ELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAH 370
++ I +KLN I+ + SATM +V E+ M + + K +
Sbjct: 196 QIYEIFQKLNT-------SIQVVFASATMPTDVLEVTKKFMRDPIRILV----KKEELTL 244
Query: 371 DSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKR 430
+ I Q + + + L E+ + + A++FL T + VD+ +E + +
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQ----AVIFLNTRRKVDWLTEKMH---ARD 297
Query: 431 IDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNY 490
+ HG +DQK+R ++ F+ + + + TD+ ARG+ V V +PT+ NY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 491 IHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
IHRIGR R G G A F+ E+ + + ++ N ++
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVE 397
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 151 bits (381), Expect = 4e-36
Identities = 125/422 (29%), Positives = 201/422 (47%), Gaps = 45/422 (10%)
Query: 127 PESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTG 186
P++F E ID L E A + F++ TP+QQ I P++ + DV+ A+TG
Sbjct: 45 PKTFKELGVIDELCE----------ACEKLGFKTPTPIQQEAI-PVVLNKRDVIGLAQTG 93
Query: 187 TGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRS 246
+GKT AF P+ Q L + NP AV++ PTR+LA QI+ + + + RS
Sbjct: 94 SGKTAAFALPVIQELWN----NPSPFFAVVLAPTRELAYQISEQFEAIG----GSIGVRS 145
Query: 247 LTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQI 306
+ ++GG ++ L + P+++V TPGR+ D L+ K++ + ++DEAD LL +
Sbjct: 146 VVIVGGMDMVTQAVAL-SKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDM 204
Query: 307 GFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKND 366
F + I + + RTLLFSATM V++L +++ + V
Sbjct: 205 DFGPIIDKILKII-------PHERRTLLFSATMTSKVEKLQRASLHQPVRV---AVSSKF 254
Query: 367 SEAHDSIDQKLVITKSFAES-MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSE 425
S I + L ++ +V L+ + + I+F TV + L
Sbjct: 255 STVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSI-------IIFARTVNDTQRLAILLR- 306
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
T I HG++ Q R +++FK V TDV ARG+ P V+ V +PT
Sbjct: 307 --TLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPT 364
Query: 486 SLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDM 545
YIHR+GRTARAG +G + + + +L+ LR + + K QE + DKE +
Sbjct: 365 DSKAYIHRVGRTARAGRAGKSIALVTQYDLE--PFLRIEATIGKKMQEYEI--DKEGVFL 420
Query: 546 IS 547
+S
Sbjct: 421 LS 422
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 151 bits (381), Expect = 4e-36
Identities = 126/396 (31%), Positives = 195/396 (48%), Gaps = 37/396 (9%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
D L ESLL + I A FE + +QQR I P + DV+A+A++GTGKT F
Sbjct: 36 DMNLSESLL-----RGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAIS 89
Query: 197 LFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
+ Q I L+ A +A+++ PTR+LA QI V L IGGTN+
Sbjct: 90 ILQQ-IELDLK---ATQALVLAPTRELAQQIQKVVMALGD----YMGASCHACIGGTNVR 141
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTELSL 314
++ L P+IIVGTPGR+ D+L+R + KY K VLDEAD +L GF+ ++
Sbjct: 142 AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK---MFVLDEADEMLSRGFKDQIYD 198
Query: 315 ISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSID 374
I +KLN NTQ +L SATM +V E+ M + + K + + I
Sbjct: 199 IFQKLNS-NTQ------VVLLSATMPSDVLEVTKKFMRDPIRILV----KKEELTLEGIR 247
Query: 375 QKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDII 434
Q + + + L E+ + + A++F+ T + VD+ +E + + +
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQ----AVIFINTRRKVDWLTEKMH---ARDFTVS 300
Query: 435 KFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG +DQK+R ++ F+ + + + TD+ ARG+ V V +PT+ NYIHRI
Sbjct: 301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360
Query: 495 GRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
GR R G G A + E+ + + ++ N I+
Sbjct: 361 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIE 396
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 150 bits (380), Expect = 5e-36
Identities = 112/388 (28%), Positives = 190/388 (48%), Gaps = 36/388 (9%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L A I+++ +E T +Q + I P +T+ DV+ AKTG+GKT+AFL P+F+H+
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAI-PAITSGRDVIGVAKTGSGKTIAFLLPMFRHI--- 480
Query: 205 KLQNPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLK--SYRSLTLIGGTNLDKS 258
K Q PL A+I+TPTR+LA+QI ++C P LK + R+ GG +
Sbjct: 481 KDQRPLKTGEGPIAIIMTPTRELAVQI------FRECKPFLKLLNIRACCAYGGAPIKDQ 534
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ DL I+V TPGR+ D+L + + VLDEAD + +GF+ + +
Sbjct: 535 IADLKR-GAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQ---VM 590
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
R +N + T+LFSAT ++ LA ++ K ++ S ++Q
Sbjct: 591 RIINNIRPDRQ----TVLFSATFPRAMEALARKVLKKP----VEITVGGRSVVASEVEQI 642
Query: 377 LVITKSFAESMVALIQSIESELLQKK-NFKAILFLPTVKFVDFFSETLSESLTKRIDIIK 435
+ + ES + + + EL + + + ++F+ + D LS+ + +
Sbjct: 643 VEVRPE--ESKFSRLLELLGELYNNQLDVRTLVFVDRQESADAL---LSDLMKRGYTSNS 697
Query: 436 FHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIG 495
HG DQ R + +K + + T V ARG+ S++ V P + +Y+HR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 496 RTARAGESGAATIFLFREELKFVDELRR 523
RT RAG +G A F+ E+ K+ ++ +
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYAVDIAK 785
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 150 bits (379), Expect = 6e-36
Identities = 111/362 (30%), Positives = 181/362 (49%), Gaps = 35/362 (9%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVK----AVIV 217
TP+Q + + P++ + D++ A TG+GKTL F+ P+ + ++ P+A A+++
Sbjct: 121 TPIQVQGL-PVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVI 179
Query: 218 TPTRDLAIQIASEVKKL--QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPG 275
P+R+LA Q V++ RSL IGG ++ L D+ +I+V TPG
Sbjct: 180 CPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQL-DVVKKGVHIVVATPG 238
Query: 276 RINDILDRVGAKYFKDVD---FKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRT 332
R+ DIL AK +D LDEAD L+ +GF+ ++ + + F +Q + T
Sbjct: 239 RLKDIL----AKKKMSLDACRLLTLDEADRLVDLGFEDDIRHV---FDHFKSQRQ----T 287
Query: 333 LLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQ 392
LLFSATM +Q A + + K + + A+ + Q++ K A+ + L
Sbjct: 288 LLFSATMPAKIQIFATSALVKPVTVNVGRA----GAANLDVIQEVEYVKQEAKIVYLL-- 341
Query: 393 SIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRF 452
E LQK ++F VD E L L K ++ + HG DQ+ R + F
Sbjct: 342 ----ECLQKTTPPVLIFCENKADVDDIHEYL---LLKGVEAVAIHGGKDQEDRDYAISLF 394
Query: 453 KKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFR 512
K + V TDV ++G+ FP ++HV +P + NY+HRIGRT R G++G AT F+ +
Sbjct: 395 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINK 454
Query: 513 EE 514
+
Sbjct: 455 NQ 456
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 150 bits (378), Expect = 8e-36
Identities = 116/408 (28%), Positives = 205/408 (49%), Gaps = 30/408 (7%)
Query: 116 KSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTT 175
K++ ++ T+ ES E+V + ++ L ++ + I A FE + +QQR + IL
Sbjct: 5 KAEKDDMATVEFES-SEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKA 63
Query: 176 ENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQ 235
DV+A+A++GTGKT F + Q L T+++ +A+I++PTR+LA+QI V L
Sbjct: 64 R-DVIAQAQSGTGKTATFSISVLQSL-DTQVRE---TQALILSPTRELAVQIQKVVLALG 118
Query: 236 QCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFK 295
+ + IGGTNL + ++ L +++ GTPGR+ D++ R + + +
Sbjct: 119 D----YMNVQCHACIGGTNLGEDIRKLD-YGQHVVSGTPGRVFDMIRRRNLRT-RAIKLL 172
Query: 296 VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKD 355
VLDEAD +L GF+ +L I R L + +L SAT+ H + E+ + M
Sbjct: 173 VLDEADEMLNKGFKEQLYDIYRYL-------PPGAQVVLLSATLPHEILEMTSKFMTDPI 225
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
+ + K D + I Q V LI ++ + + A+LF T +
Sbjct: 226 RILV----KRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQ----AVLFCNTRRK 277
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
VD+ ++ + E+ + HG ++QK R +++ F+ + + TDV ARG+ P V
Sbjct: 278 VDWLTDKMKEA---NFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQV 334
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V +P + YIHRIGR+ R G G A F+ +++++ + ++ +
Sbjct: 335 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 382
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 149 bits (377), Expect = 1e-35
Identities = 110/362 (30%), Positives = 181/362 (49%), Gaps = 35/362 (9%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVK----AVIV 217
TP+Q + + P++ D++ A TG+GKTL F+ P+ + ++ P+A +IV
Sbjct: 170 TPIQVQGL-PVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV 228
Query: 218 TPTRDLAIQIASEVKKLQQ--CNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPG 275
P+R+LA Q V++ RSL IGG ++ L+ + +I+V TPG
Sbjct: 229 CPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKR-GVHIVVATPG 287
Query: 276 RINDILDRVGAKYFKDVD---FKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRT 332
R+ D+L AK +D + LDEAD L+ +GF+ ++ + + F +Q + T
Sbjct: 288 RLKDML----AKKKMSLDACRYLTLDEADRLVDLGFEDDIREV---FDHFKSQRQ----T 336
Query: 333 LLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQ 392
LLFSATM +Q A + + K + + A+ + Q++ K A+ + L
Sbjct: 337 LLFSATMPTKIQIFARSALVKPVTVNVGRA----GAANLDVIQEVEYVKQEAKIVYLL-- 390
Query: 393 SIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRF 452
E LQK + ++F VD E L L K ++ + HG DQ+ R + F
Sbjct: 391 ----ECLQKTSPPVLIFCENKADVDDIHEYL---LLKGVEAVAIHGGKDQEDREYAISSF 443
Query: 453 KKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFR 512
K + V TDV ++G+ FP ++HV +P + NY+HRIGRT R G++G AT F+ +
Sbjct: 444 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 503
Query: 513 EE 514
+
Sbjct: 504 NQ 505
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 149 bits (376), Expect = 1e-35
Identities = 119/410 (29%), Positives = 206/410 (50%), Gaps = 27/410 (6%)
Query: 108 ENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQR 167
+ SD E+ + + N T++ + +T +E+ V + A F+ T +Q +
Sbjct: 86 DRSDSEIAQFRKENEMTISGHDIPKPITT---FDEAGFPDYVLNEVKAEGFDKPTGIQCQ 142
Query: 168 TIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIV-TPTRDLAIQ 226
P+ + D+V A TG+GKTL++ P H+ + L P V+V PTR+LA+Q
Sbjct: 143 GW-PMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQ 201
Query: 227 IASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGA 286
I +E K + R+ + GG + ++DL + I++ TPGR+ D+L+ +G
Sbjct: 202 IQTECSKFGHSS----RIRNTCVYGGVPKSQQIRDL-SRGSEIVIATPGRLIDMLE-IGK 255
Query: 287 KYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQEL 346
K V + VLDEAD +L +GF+ ++ I ++ +TL++SAT V++L
Sbjct: 256 TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-------QTLMWSATWPKEVKQL 308
Query: 347 AATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKA 406
AA +N + + +++ + S +I Q + + F E L + +E+ Q +K
Sbjct: 309 AADYLNDPIQVQVGSLELSASH---NITQIVEVVSDF-EKRDRLNKYLETAS-QDNEYKT 363
Query: 407 ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
++F T + D ++ L E + I HG DQ++R ++ F+ I V TDV
Sbjct: 364 LIFASTKRMCDDITKYLREDGWPALAI---HGDKDQRERDWVLQEFRNGRSPIMVATDVA 420
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
ARG+ + +V +P ++ +Y+HRIGRT RAG +G A F F E+ K
Sbjct: 421 ARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISF-FTEQNK 469
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 149 bits (376), Expect = 1e-35
Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 35/374 (9%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+A +K+++ + +Q+ I P+ DV+ A+TG+GKT AF P+ L L+NP
Sbjct: 74 QACDELKWKAPSKIQREAI-PVALQGKDVIGLAETGSGKTGAFALPILHAL----LENPQ 128
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
A+++TPTR+LA QI + + L S + ++GG ++ L P+II
Sbjct: 129 RYFALVLTPTRELAFQIGEQFEALG----SGIGIKCCVVVGGMDMVAQGLQL-AKKPHII 183
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
+ TPGR+ D L+ + K + + V+DEAD +L + F+ EL I + L
Sbjct: 184 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVL-------PRER 236
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
RT LFSATM V++L + D V S + +++Q + +S+ V
Sbjct: 237 RTFLFSATMTKKVKKLQRASLK-------DPVKVEVSNKYQTVEQ---LQQSYLFIPVKY 286
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKR---IDIIKFHGKIDQKKRTK 447
+L + + + F + T+ +L R + I HG++ Q KR
Sbjct: 287 KDVYLVHILNELAGNSFMI-----FCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLA 341
Query: 448 LVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAAT 507
+++FK N I + TDV +RG+ P V+ V +PT +YIHR+GRTARAG SG A
Sbjct: 342 ALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAI 401
Query: 508 IFLFREELKFVDEL 521
+ + +++ +
Sbjct: 402 TLVSQYDIELYQRI 415
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 149 bits (375), Expect = 2e-35
Identities = 124/439 (28%), Positives = 201/439 (45%), Gaps = 33/439 (7%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQN 208
+ + M FE++TPVQ TI P+L DVV + TG+GKT AF+ P+ + ++ +
Sbjct: 18 IRTGLDVMGFETMTPVQASTI-PMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANT 76
Query: 209 PLAVKA----VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
KA +I+ PTR+L+ QI S V + PS L+ GTN D+
Sbjct: 77 SKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSN 136
Query: 265 L---NPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNE 321
P I++GTPGR+ D L K V+DEAD LL + F + I R L
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKT-SACSMVVMDEADRLLDMSFIKDTEKILRLL-- 193
Query: 322 FNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK 381
+ RT LFSATM ++ T + + +++ KN + + ++ +V
Sbjct: 194 -----PKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNS--KNQAPSSLKLNYCVVNPA 246
Query: 382 SFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLS-----ESLTKRIDIIKF 436
+ +V+++ + + + K I++ PT V +F + L ++I
Sbjct: 247 EKLQLLVSILNNYKFK-------KCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSL 299
Query: 437 HGKIDQKKRTKLVDRFKKT-NHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIG 495
HGK+ RTK + F + ++ + TDV ARG+ P V+ V QL PT+ ++HR G
Sbjct: 300 HGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCG 359
Query: 496 RTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENF--DMISSIITNN 553
RT RA G A FL + + NV ++ + + NF D + I+ +
Sbjct: 360 RTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDR 419
Query: 554 PDFPEALKSIIGFYKGVQN 572
F + +K+ + F K N
Sbjct: 420 DRFDKGVKAYVAFIKYYSN 438
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 149 bits (375), Expect = 2e-35
Identities = 101/373 (27%), Positives = 194/373 (51%), Gaps = 26/373 (6%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQN 208
V K I ++ TP+Q++TI P++ DVVA A+TG+GKT FL P+F+ L + Q
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTI-PVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQT 165
Query: 209 PLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPN 268
+A+I++PTR+LA+Q K+L + ++ ++GG ++ LH NP+
Sbjct: 166 --GARALILSPTRELALQTLKFTKELGK----FTGLKTALILGGDRMEDQFAALHE-NPD 218
Query: 269 IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE 328
II+ TPGR+ + + K + V++ V DEAD L ++GF +L I +L +
Sbjct: 219 IIIATPGRLVHVAVEMSLK-LQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH----- 272
Query: 329 HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMV 388
+T+LFSAT+ + E A + + + +D D++ ++ + + + ++
Sbjct: 273 --QTVLFSATLPKLLVEFARAGLTEPVLIRLDV----DTKLNEQLKTSFFLVRE--DTKA 324
Query: 389 ALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKL 448
A++ + +++ ++ + ++F+ T ++ +E L+ T+R+ + +D R
Sbjct: 325 AVLLHLLHNVVRPQD-QTVVFVATKHHAEYLTELLT---TQRVSCAHIYSALDPTARKIN 380
Query: 449 VDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATI 508
+ +F + TD+ ARG+ P +++V P ++HR+GR ARAG SG A
Sbjct: 381 LAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYS 440
Query: 509 FLFREELKFVDEL 521
+ +E+ ++ +L
Sbjct: 441 LVAPDEIPYLLDL 453
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 148 bits (374), Expect = 2e-35
Identities = 117/382 (30%), Positives = 190/382 (49%), Gaps = 23/382 (6%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE+ V K + + FE+ TP+QQ+ P+ + D+V + TG+GKTL++ P H
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAW-PMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 201 LISTKLQNPLAVKAVIV-TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
+ + L +P V+V PTR+LA+QI E K + + R+ + GG +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSS----RIRNTCVYGGVPRGPQI 239
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
+DL I + TPGR+ D+LD + V + VLDEAD +L +GF+ ++ I ++
Sbjct: 240 RDL-IRGVEICIATPGRLLDMLDS-NKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+T++FSAT VQ LA +N D + + TV D A +I Q + +
Sbjct: 298 RPDR-------QTVMFSATWPKEVQRLARDYLN--DYIQV-TVGSLDLAASHNIKQIVEV 347
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
+ A+ L + IE E+L+ ++ K ++F T + D + L + + I HG
Sbjct: 348 VDN-ADKRARLGKDIE-EVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAI---HGD 402
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
Q +R +++ F+ I V TDV +RG+ + HV+ P + +Y+HRIGRT R
Sbjct: 403 KAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGR 462
Query: 500 AGESGAATIFLFREELKFVDEL 521
AG G A + + K EL
Sbjct: 463 AGAKGTAYTYFTSDNAKQAREL 484
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 148 bits (373), Expect = 3e-35
Identities = 109/379 (28%), Positives = 190/379 (49%), Gaps = 34/379 (8%)
Query: 151 KAISAMK---FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-L 206
K ++++K +E TP+Q + I P + + D++ AKTG+GKT+AFL P+F+H++ + L
Sbjct: 382 KILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSL 440
Query: 207 QNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
+ AVI+TPTR+LA+QI E KK + R + + GGT + + + +L
Sbjct: 441 EEGEGPIAVIMTPTRELALQITKECKKFSKT----LGLRVVCVYGGTGISEQIAELKR-G 495
Query: 267 PNIIVGTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
IIV TPGR+ D+L + + V + VLDEAD + +GF+ ++ I +
Sbjct: 496 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR- 554
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
+T++FSAT ++ LA I++K I+ S ++Q++++ +
Sbjct: 555 ------QTVMFSATFPRAMEALARRILSKP----IEVQVGGRSVVCSDVEQQVIVIEEEK 604
Query: 385 ESMVALIQSIESELL--QKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
+ + L ELL +++ I+F+ + D L + + + HG IDQ
Sbjct: 605 KFLKLL------ELLGHYQESGSVIIFVDKQEHADGL---LKDLMRASYPCMSLHGGIDQ 655
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGE 502
R +++ FK + V T V ARG+ + V P +Y+HR GRT RAG
Sbjct: 656 YDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
Query: 503 SGAATIFLFREELKFVDEL 521
G A F+ ++ ++ ++
Sbjct: 716 KGYAYTFITEDQARYAGDI 734
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 148 bits (373), Expect = 3e-35
Identities = 124/416 (29%), Positives = 203/416 (47%), Gaps = 43/416 (10%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
D ++ESL+ K I+ T VQ++ I P + DV+A ++TG+GKTLAF+ P
Sbjct: 5 DLRIDESLIKTCQEKGITRP-----TEVQRQVI-PAVLGGGDVIAVSQTGSGKTLAFVLP 58
Query: 197 LFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
+ HL LQ + ++V PTR+L+ QIA Q R L+GG N +
Sbjct: 59 IVSHL----LQKNRSFYCLVVAPTRELSSQIAECFNMFQ-----ATGLRVCLLVGGANFN 109
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
L + P+++VGTPGRI + + + + + V VLDEAD + F +L I
Sbjct: 110 VQANQL-SKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETII 168
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
L E +TLLF+ATM + +L+++I+ + I T +K ++
Sbjct: 169 PSLREKR-------QTLLFTATMSDEISKLSSSILKRPKT--IRTAEKYETVPALKEYYL 219
Query: 377 LVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIK- 435
V K ++V L++ + I+F+ S L+ R+
Sbjct: 220 FVAMKWKNSALVELLE-------MSQGMSVIVFVSMCVTARVMSLALA-----RLGFCSE 267
Query: 436 -FHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG++ Q+KR + + FK++ + VCTD+G+RG+ V+ V VP S +YIHR+
Sbjct: 268 ALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRV 327
Query: 495 GRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSII 550
GRTARAG SG A + + + V+++++ + K E++ K+NF I + I
Sbjct: 328 GRTARAGRSGTAITLVTQYD---VEQIQKIEFTLEKKLEEF-KMMKKNFGTICARI 379
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 148 bits (373), Expect = 3e-35
Identities = 109/360 (30%), Positives = 181/360 (50%), Gaps = 29/360 (8%)
Query: 171 PILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVK----AVIVTPTRDLAIQ 226
P+ + D++ A TG+GKT+ F+ PL + +++ P +I+ P+R+LA Q
Sbjct: 222 PVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQ 281
Query: 227 IASEVKKLQQC--NPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRV 284
I + ++ L R+ IGG + + KD+ +I+V TPGR++D+L +
Sbjct: 282 IFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRD-GIHIVVATPGRLSDMLTKK 340
Query: 285 GAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQ 344
+ + VLDEAD +L +GF+ E+ I F Q + TLLFSATM +Q
Sbjct: 341 IIN-LEVCRYLVLDEADRMLDMGFEDEIKSI---FYFFKAQRQ----TLLFSATMPRKIQ 392
Query: 345 ELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNF 404
A + + K + + A ++ Q+L F S L++ +E LQK +
Sbjct: 393 FFAKSALVKPIVVNVGRA----GAASLNVLQEL----EFVRSENKLVRVLEC--LQKTSP 442
Query: 405 KAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTD 464
K ++F VD E L L K +++ HG DQ R ++ F+K + V TD
Sbjct: 443 KVLIFAEKKVDVDNIYEYL---LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATD 499
Query: 465 VGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFRE-ELKFVDELRR 523
V ++G+ F +EHV +P + NY+HRIGRT R+G G AT F+ ++ E+ + +L++
Sbjct: 500 VASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQ 559
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 148 bits (373), Expect = 3e-35
Identities = 105/344 (30%), Positives = 176/344 (50%), Gaps = 25/344 (7%)
Query: 183 AKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLK 242
A+TGTGKTLAF P+ Q L +P + A+I+TPTR+LA QIA + L +
Sbjct: 190 ARTGTGKTLAFAIPILQKLSV----DPYGIYALILTPTRELAFQIAEQFTALGKPI---- 241
Query: 243 SYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDR---VGAKYFKDVDFKVLDE 299
+ + ++GG +L ++L P+++V TPGR+ D+++ AK FK + F VLDE
Sbjct: 242 TLKCSVIVGGRSLIHQARELSE-RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDE 300
Query: 300 ADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFI 359
AD +L+ + +L I ++E +TLL SAT+ +N+ L K F
Sbjct: 301 ADRMLEGQYNDQLKPIFESISEKR-------QTLLLSATITNNINMLHRVSTRKP--YFF 351
Query: 360 DTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFF 419
+ K+D D ++QK V+ A L+ +++ + ++F T +
Sbjct: 352 EDKGKDDESTVDRLEQKYVVCP-VAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQAL 410
Query: 420 SETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVY 479
+ + E L R+ + H +I QK+R + F+ + +CTDV +RG+ P V+ V
Sbjct: 411 AY-MFEGLGFRVGSL--HSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVV 467
Query: 480 QLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
VP YIHR+GR+ARAG G+A F+ + +++ + + +
Sbjct: 468 NHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQ 511
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 148 bits (373), Expect = 3e-35
Identities = 116/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
+S L E++LD FE +P+Q T P L D++ AKTG+GKTLAF P
Sbjct: 120 ESNLPENVLDC-------CKTFEKPSPIQSHTW-PFLLDGRDLIGIAKTGSGKTLAFGIP 171
Query: 197 LFQHLIS--------TKLQNPLAVKAVIVTPTRDLAIQIASEVKKL-QQCNPSLKSYRSL 247
H++ +K NP + +++PTR+LA+QI+ +++ + C +S+
Sbjct: 172 AIMHVLKKNKKIGGGSKKVNPTCL---VLSPTRELAVQISDVLREAGEPCG-----LKSI 223
Query: 248 TLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIG 307
+ GG++ + + + +I++GTPGR+ D+++ DV F VLDEAD +L +G
Sbjct: 224 CVYGGSSKGPQISAIRS-GVDIVIGTPGRLRDLIES-NVLRLSDVSFVVLDEADRMLDMG 281
Query: 308 FQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDS 367
F+ + I N+ + ++FSAT +V +LA M+ I + D
Sbjct: 282 FEEPVRFILSNTNKVR-------QMVMFSATWPLDVHKLAQEFMDPNPIKVI--IGSVDL 332
Query: 368 EAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESL 427
A+ + Q + + A LI +E +KN + L V+ +E L L
Sbjct: 333 AANHDVMQIIEVLDERARDQ-RLIALLEKYHKSQKNRVLVFALYKVE-----AERLERFL 386
Query: 428 TKR-IDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTS 486
+R + HG Q +RT+ + FK+ + + V TDV ARG+ P VE V P +
Sbjct: 387 QQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLT 446
Query: 487 LPNYIHRIGRTARAGESGAATIF 509
+Y+HRIGRT RAG+ G A F
Sbjct: 447 TEDYVHRIGRTGRAGKKGVAHTF 469
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 147 bits (372), Expect = 4e-35
Identities = 115/427 (26%), Positives = 205/427 (47%), Gaps = 51/427 (11%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L+ + +AI F++ TP+Q++TI P+L DVV A+TG+GKT AF+ P+ +HL ST
Sbjct: 76 LNQTLLRAIFKKGFKAPTPIQRKTI-PLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
+ +A+I++P R+LA+Q VK + RS+ ++GG +L++ L +
Sbjct: 135 LANS--NTRALILSPNRELALQTVKVVKDFSKGT----DLRSVAIVGGVSLEEQF-SLLS 187
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
P+I+V TPGR + + + +++ V DEAD L ++GF +L+ I L
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLE-LSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR- 245
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
+TLLFSAT+ + + A + + +D K ++ + V T
Sbjct: 246 ------QTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFS--VKTAERE 297
Query: 385 ESMVALIQSIESELLQ--------------KKNFKA----------------ILFLPTVK 414
+++ ++Q I L+ KK +A ++F+PT
Sbjct: 298 AALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKH 357
Query: 415 FVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPS 474
V++ SE L ++ + K +G +DQ+ R ++ F+ + V TDV +RG+ P
Sbjct: 358 HVEYVSELLVQA---GYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPL 414
Query: 475 VEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQED 534
+ +V P ++HR+GRTARAG +G A + E+ ++ +L+ N +
Sbjct: 415 LANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSK 474
Query: 535 YLNQDKE 541
+ D +
Sbjct: 475 QVKTDSD 481
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 147 bits (372), Expect = 4e-35
Identities = 114/383 (29%), Positives = 187/383 (48%), Gaps = 26/383 (6%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ + + AI +E T +Q + + PI+ + DV+ AKTG+GKT AF+ P+ H
Sbjct: 231 EDCGFSSQIMSAIKKQAYEKPTAIQCQAL-PIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 201 LIST-KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
++ +LQ VI PTR+LA QI E KK + R + GG + +
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAY----GLRVSAVYGGMSKHEQF 345
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
K+L I+V TPGR+ D+L ++ A + VLDEAD + +GF+ ++ I ++
Sbjct: 346 KELKA-GCEIVVATPGRLIDML-KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQI 403
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+TLLFSATM V++LA I++ + + V A++ I Q + +
Sbjct: 404 RPDR-------QTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM----ANEDITQVVNV 452
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
S AE + L++ + + + ++F VD L+ + K + HG
Sbjct: 453 IPSDAEKLPWLLEKLPGMIDEGD---VLVFASKKATVDEIEAQLTLNSFK---VAALHGD 506
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
DQ R + + +FK H + + TDV ARG+ S++ V + + ++HRIGRT R
Sbjct: 507 KDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGR 566
Query: 500 AGE-SGAATIFLFREELKFVDEL 521
AG+ G A + + E +F EL
Sbjct: 567 AGDRDGVAYTLVTQREARFAGEL 589
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 147 bits (371), Expect = 5e-35
Identities = 112/381 (29%), Positives = 192/381 (49%), Gaps = 27/381 (7%)
Query: 146 DANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK 205
D + KA+ ++ TP+Q + + P + D++ AKTG+GKT AF+ P+ H++ K
Sbjct: 277 DEQLIKAVRKAEYTQPTPIQAQAV-PTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQK 335
Query: 206 LQNPL-AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
P +I+ PTR+L++QI +E KK + + + + GG + + K L
Sbjct: 336 QLKPGDGPIGLILAPTRELSLQIYNEAKKFGK----VYNLNVVCCYGGGSKWEQSKALEQ 391
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
IIV TPGR+ D++ ++ A + V F VLDEAD + +GF+ ++ I +
Sbjct: 392 -GAEIIVATPGRMIDMV-KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDR- 448
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
+ L+FSAT ++ LA +++ + V + +EA+ I Q + + +
Sbjct: 449 ------QCLMFSATFKKRIERLARDVLSDP----VRIVQGDLNEANQDITQSVYVFPNPL 498
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLT-KRIDIIKFHGKIDQK 443
+ L+ L++ + ++L T K VD +ET+S +L K + + HG +DQ
Sbjct: 499 QKWNWLL----CHLVKFLSEGSVLIFVTKK-VD--AETVSNNLLIKEYNCLLLHGDMDQA 551
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
R K++ +FK+ I V TDV ARG+ P + +V + + HRIGRT RAGE
Sbjct: 552 DRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEK 611
Query: 504 GAATIFLFREELKFVDELRRD 524
G A + ++ +F L R+
Sbjct: 612 GNAYTLVTDKDKEFAGHLVRN 632
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 147 bits (370), Expect = 7e-35
Identities = 113/400 (28%), Positives = 200/400 (49%), Gaps = 30/400 (7%)
Query: 132 EQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTL 191
+++ + S E L ++ + I + FE+ + +Q R I I++ + DV+A+A++GTGKT
Sbjct: 17 KKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTA 75
Query: 192 AFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIG 251
F L Q + K ++A+I++PTR+LA QI VK L + + + G
Sbjct: 76 TFTIGLLQAIDLRKKD----LQALILSPTRELASQIGQVVKNLGD----YMNVNAFAITG 127
Query: 252 GTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ--IGFQ 309
G L LK + + GTPGR+ D++ + + ++V VLDEAD LL +GF+
Sbjct: 128 GKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQT-RNVQMLVLDEADELLSETLGFK 186
Query: 310 TELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEA 369
++ I KL ++ + ++ SATM+ ++ E+ MN + + K D +
Sbjct: 187 QQIYDIFAKL-------PKNCQVVVVSATMNKDILEVTRKFMNDPVKILV----KRDEIS 235
Query: 370 HDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
+ I Q +V L +S + + ++F T K VD+ S+ L +S
Sbjct: 236 LEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ----CVIFCNTKKKVDWLSQRLIQS--- 288
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
++ HG + Q++R K+++ F+ + + + TDV ARG+ V V +P + N
Sbjct: 289 NFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIEN 348
Query: 490 YIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVI 529
YIHRIGR+ R G G A F+ + +L + E+ + ++ I
Sbjct: 349 YIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKI 388
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 147 bits (370), Expect = 7e-35
Identities = 116/392 (29%), Positives = 194/392 (48%), Gaps = 53/392 (13%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL-A 211
I ++ TPVQ+ I PI+ + D++A A+TG+GKT AFL P+ + S L A
Sbjct: 195 IELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 253
Query: 212 VK-------------AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRS----LTLIGGTN 254
+K ++++ PTR+LA+QI E +K SYRS + GG +
Sbjct: 254 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF--------SYRSRVRPCVVYGGAD 305
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTEL 312
+ + ++DL +++V TPGR+ D+++R +G + K + VLDEAD +L +GF+ ++
Sbjct: 306 IGQQIRDLER-GCHLLVATPGRLVDMMERGKIGLDFCK---YLVLDEADRMLDMGFEPQI 361
Query: 313 SLISRKLNEFNTQGEEHIR-TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
R++ E +T + +R T++FSAT +Q LA +++ L + V +
Sbjct: 362 ----RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS----E 413
Query: 372 SIDQKLVITKSFAESMVALIQSIESELLQK--KNFKAILFLPTVKFVDFFSETLSESLTK 429
+I QK+V + + L +LL K+ ++F+ T K D + L +
Sbjct: 414 NITQKVVWVEESDKRSFLL------DLLNATGKDSLTLVFVETKKGADSLEDFLYH---E 464
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
HG Q+ R + + +F+ I V T V ARG+ +V+HV +P+ +
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 490 YIHRIGRTARAGESGAATIFLFREELKFVDEL 521
Y+HRIGRT R G G AT F + +L
Sbjct: 525 YVHRIGRTGRVGNLGLATSFFNERNINITKDL 556
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 147 bits (370), Expect = 7e-35
Identities = 119/391 (30%), Positives = 194/391 (49%), Gaps = 39/391 (9%)
Query: 146 DANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK 205
D + +AI ++E TP+Q I P + DV+ AKTG+GKT A+L P H++
Sbjct: 273 DKLLMEAIRKSEYEQPTPIQAMAI-PSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQP 331
Query: 206 -LQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
L+ AVIV PTR+LAIQ+ E KK + + + + GG + + +L
Sbjct: 332 DLKAGEGPVAVIVVPTRELAIQVFQEAKKFCK----VYNINPICAYGGGSKWEQSNELQN 387
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
++V TPGRI D++ ++GA F F V DEAD + +GF+ ++ IS
Sbjct: 388 EGAEMVVCTPGRIIDLV-KMGATNFLRTTFLVFDEADRMFDMGFEAQVKSIS-------- 438
Query: 325 QGEEHIRT----LLFSATMDHNVQELAATIMNKKDCLF--IDTVDKNDSEAHDSIDQKLV 378
+H+R L+FSAT V+ LA +D L + V EA+ I+QK+
Sbjct: 439 ---DHVRPDRQCLMFSATFKQKVERLA------RDALVDPVRIVQGEVGEANADIEQKVF 489
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLT-KRIDIIKFH 437
+ ++ + LI++ L++ + +L T K SE +++ L K DI+ H
Sbjct: 490 VMQNQDVKLHWLIRN----LVEFASLGKVLIFVTKKLD---SEDVAKKLKMKDFDIVLLH 542
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
G + Q +R + + +F+K + I V TDV ARG+ + V + + ++HRIGRT
Sbjct: 543 GDMLQAERNENLLKFRKKSQ-ILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRT 601
Query: 498 ARAGESGAATIFLFREELKFVDELRRDTNVV 528
RAG G A + ++++ V L ++ V
Sbjct: 602 GRAGHKGTAYTLVTEKDIEMVGHLVKNLESV 632
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 146 bits (369), Expect = 9e-35
Identities = 116/396 (29%), Positives = 198/396 (49%), Gaps = 45/396 (11%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L++++ + I + TPVQ+ +I PI+T+ D++A A+TG+GKT FL P+
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSI-PIVTSGRDLMACAQTGSGKTAGFLFPILSLAFD- 233
Query: 205 KLQNPLAVKA-----------------VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSL 247
+ P AV +I+ PTR+L QI E +K C S R
Sbjct: 234 --KGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKF--CYRSW--VRPC 287
Query: 248 TLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIG 307
+ GG ++ ++ + +++ TPGR+ D++DR G ++ F VLDEAD +L +G
Sbjct: 288 AVYGGADIRAQIRQIDQ-GCDLLSATPGRLVDLIDR-GRISLANIKFLVLDEADRMLDMG 345
Query: 308 FQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDS 367
F+ ++ I + + E +TL+FSAT ++Q LA + KD +F+ +V + S
Sbjct: 346 FEPQIRHI---VEGADMTSVEERQTLMFSATFPRDIQLLARDFL--KDYVFL-SVGRVGS 399
Query: 368 EAHDSIDQKLVITKSFAES--MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSE 425
+ ++I QK+V + + ++ ++ ++ E L ++F+ T + D ++ L
Sbjct: 400 TS-ENITQKVVHVEDSEKRSYLLDILHTLPPEGL------TLIFVETKRMADTLTDYL-- 450
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
L HG Q++R + ++ F+ I V T V +RG+ P+V HV +PT
Sbjct: 451 -LNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPT 509
Query: 486 SLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+ +Y+HRIGRT RAG +G A F R EL
Sbjct: 510 DIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKEL 545
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 146 bits (369), Expect = 9e-35
Identities = 116/390 (29%), Positives = 190/390 (47%), Gaps = 37/390 (9%)
Query: 139 LLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLF 198
+ +++ N+ +AI+ + F TP+Q + P+ D++ A+TG+GKTLA+L P
Sbjct: 139 MFQDANFPDNILEAIAKLGFTEPTPIQAQGW-PMALKGRDLIGIAETGSGKTLAYLLPAL 197
Query: 199 QHLIST-KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKS-YRSLTLIGGTNLD 256
H+ + +L +I+ PTR+LA+QI E +K L+S RS + GG
Sbjct: 198 VHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF-----GLRSGVRSTCIYGGAPKG 252
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
++DL I++ TPGR+ D+L+ K V + VLDEAD +L +GF+ ++ I
Sbjct: 253 PQIRDLRR-GVEIVIATPGRLIDMLECQHTN-LKRVTYLVLDEADRMLDMGFEPQIRKIV 310
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQ- 375
++ +TLL+SAT V+ LA + + + D +A+ SI+Q
Sbjct: 311 SQIRPDR-------QTLLWSATWPREVETLARQFLRDP---YKAIIGSTDLKANQSINQV 360
Query: 376 -KLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID-- 432
++V T ++ L++ + K ++F+ T + D + L R+D
Sbjct: 361 IEIVPTPEKYNRLLTLLKQLMD------GSKILIFVETKRGCDQVTRQL------RMDGW 408
Query: 433 -IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
+ HG Q +R +++ FK I TDV ARG+ ++ V P +L +YI
Sbjct: 409 PALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYI 468
Query: 492 HRIGRTARAGESGAATIFLFREELKFVDEL 521
HRIGRT RAG G A F + KF EL
Sbjct: 469 HRIGRTGRAGAKGMAFTFFTHDNAKFAREL 498
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 146 bits (368), Expect = 1e-34
Identities = 114/392 (29%), Positives = 196/392 (49%), Gaps = 53/392 (13%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL-A 211
I ++ TPVQ+ I PI+ + D++A A+TG+GKT AFL P+ + + L A
Sbjct: 193 IELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKA 251
Query: 212 VK-------------AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRS----LTLIGGTN 254
VK ++++ PTR+LA+QI E +K SYRS + GG +
Sbjct: 252 VKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF--------SYRSRVRPCVVYGGAD 303
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTEL 312
+ + ++DL +++V TPGR+ D+++R +G + K + VLDEAD +L +GF+ ++
Sbjct: 304 IGQQIRDLER-GCHLLVATPGRLVDMMERGKIGLDFCK---YLVLDEADRMLDMGFEPQI 359
Query: 313 SLISRKLNEFNTQGEEHIR-TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
R++ E +T + +R T++FSAT +Q LA +++ L + V +
Sbjct: 360 ----RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS----E 411
Query: 372 SIDQKLVITKSFAES--MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
+I QK+V + + ++ ++ + S+ L ++F+ T K D + L +
Sbjct: 412 NITQKVVWVEDLDKRSFLLDILGATGSDSL------TLVFVETKKGADSLEDFLYH---E 462
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
HG Q+ R + + +F+ I V T V ARG+ +V HV +P+ +
Sbjct: 463 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEE 522
Query: 490 YIHRIGRTARAGESGAATIFLFREELKFVDEL 521
Y+HRIGRT R G G AT F + + +L
Sbjct: 523 YVHRIGRTGRVGNLGLATSFFNEKNMNITKDL 554
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 146 bits (368), Expect = 1e-34
Identities = 111/391 (28%), Positives = 194/391 (49%), Gaps = 37/391 (9%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIV 217
++S T VQ + +L +DVV ++ TG+GKTLAF+ P+ + + + KLQ P + A+I+
Sbjct: 29 YKSFTDVQVLSGTHLLNL-SDVVVESPTGSGKTLAFVLPMMRMIQNAKLQ-PADIGALIL 86
Query: 218 TPTRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGR 276
+P+R+L QI S ++ ++ N +++ T+ GG +DK++K N NI+V TPGR
Sbjct: 87 SPSRELCSQIVSVIQPFAEKLNLTVE-----TVTGGQKVDKNIKMFKNKNVNILVATPGR 141
Query: 277 INDILDR---VGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTL 333
+ I+ + A+ + + V+DEAD +I F+ + I + + RT
Sbjct: 142 LFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCI-------PKQRRTG 194
Query: 334 LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQS 393
LFSAT +L + ++ + + +S A ++ V ++ ++ V L
Sbjct: 195 LFSATQVKEEDDLM--VFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCL--- 249
Query: 394 IESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFK 453
+ Q+ + K ++F P+ V +F + L KR + HGK R + F
Sbjct: 250 --EFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKR-PLFAVHGKCSNPHRASQIKAFS 306
Query: 454 KTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFRE 513
+ +G+ + TDV ARG+ ++ V Q +P ++HR GRTAR G G A I + E
Sbjct: 307 DSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASE 366
Query: 514 ELKFV-----------DELRRDTNVVIKNQE 533
+L +V DE++ TN K++E
Sbjct: 367 QLAYVNFLDNHEKVKLDEIKVPTNNSRKSEE 397
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 146 bits (368), Expect = 1e-34
Identities = 104/382 (27%), Positives = 188/382 (48%), Gaps = 22/382 (5%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+AI + + TP+Q TI P+ D+ A TGTGKT A++ P + L+ L N
Sbjct: 170 RAIGVLGYIYPTPIQASTI-PVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKA 228
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+ +++ PTR+L Q+ K+L Q + IGG ++ K+ + + NP+I+
Sbjct: 229 ITRVLVLVPTRELGAQVYQVTKQLCQ----FTTIDVGLAIGGLDV-KAQEAVLRQNPDIV 283
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
+ TPGR+ D + + ++ +LDEAD +L F ++ I +
Sbjct: 284 IATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTR------- 336
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+T+LFSATM V++LAA ++K +F++ N+ + ++ Q+ + + E
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKVFVN----NNQQVAFNLRQEFIRIREDKEGDREP 392
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
I + S + + + ++F+ T K L + + HG + Q++R + +
Sbjct: 393 I--LASLICRTFHDHCMVFVQTKKQAHRLHILLG---LLGVRAGELHGNLTQQQRLESLK 447
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
+FK+ + + TDV ARG+ V+ V +P + +YIHR+GRTARAG +G +
Sbjct: 448 KFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLA 507
Query: 511 FREELKFVDELRRDTNVVIKNQ 532
+E K V ++ ++ IKN+
Sbjct: 508 GEKERKIVKDIIKNAESTIKNR 529
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 145 bits (366), Expect = 2e-34
Identities = 118/385 (30%), Positives = 192/385 (49%), Gaps = 35/385 (9%)
Query: 146 DANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK 205
D + I ++ TP+Q + + P+ + D++ AKTG+GKT AF+ P+ H++ K
Sbjct: 142 DEQLMHQIRKSEYTQPTPIQCQGV-PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200
Query: 206 LQNPL-AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
P AVIV PTR+L QI +E K+ + + RS+ + GG ++ + K L
Sbjct: 201 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAY----NLRSVAVYGGGSMWEQAKALQE 256
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
I+V TPGR+ D + + A + V + V DEAD + +GF+ ++ I+
Sbjct: 257 -GAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIA-------- 306
Query: 325 QGEEHIR----TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
H+R TLLFSAT +++LA I+ I V + EA++ + Q + I
Sbjct: 307 ---SHVRPDRQTLLFSATFRKKIEKLARDILIDP----IRVVQGDIGEANEDVTQIVEIL 359
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKR-IDIIKFHGK 439
S L + L++ + ++L T K +E L+ +L + ++ HG
Sbjct: 360 HSGPSKWNWLTR----RLVEFTSSGSVLLFVTKKAN---AEELANNLKQEGHNLGLLHGD 412
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
+DQ +R K++ FKK + + V TDV ARG+ PS++ V V + + HRIGRT R
Sbjct: 413 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 472
Query: 500 AGESGAATIFLFREELKFVDELRRD 524
AGE G A L ++ F +L R+
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRN 497
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 145 bits (366), Expect = 2e-34
Identities = 104/376 (27%), Positives = 185/376 (48%), Gaps = 27/376 (7%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST-KLQNP 209
+ + + FE TP+Q + I P + + D++ AKTG+GKTLAF+ P+F+H++ +++
Sbjct: 523 EVLRRLGFEKPTPIQCQAI-PAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDG 581
Query: 210 LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNI 269
A+I+ PTR+L +QI +++K + R + + GGT + + + +L I
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKS----LGLRPVCVYGGTGISEQIAELKR-GAEI 636
Query: 270 IVGTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGE 327
IV TPGR+ D+L + + V + VLDEAD + +GF+ ++ I +
Sbjct: 637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR---- 692
Query: 328 EHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESM 387
+T++FSAT ++ LA I+ K I+ + S ++Q +VI A+
Sbjct: 693 ---QTVMFSATFPRQMEALARRILKKP----IEVIVGGRSVVCKEVEQHVVILNDDAK-- 743
Query: 388 VALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTK 447
+ +E + ++ I+F+ + D L + + + HG IDQ R
Sbjct: 744 --FFKLLELLGIYQEAGSIIVFVDKQENADIL---LRDLMKASYPCMSLHGGIDQFDRDS 798
Query: 448 LVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAAT 507
+ FK + + T V ARG+ + V VP +Y+HR GRT RAG+ G+A
Sbjct: 799 TIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAY 858
Query: 508 IFLFREELKFVDELRR 523
F+ E+ ++ ++ R
Sbjct: 859 TFITPEQSRYAGDIIR 874
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 145 bits (365), Expect = 3e-34
Identities = 104/356 (29%), Positives = 182/356 (50%), Gaps = 26/356 (7%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
K I+ ++ TP+Q++TI P++ DVVA AKTG+GKT FL PLF+ L + +
Sbjct: 108 KGITKRGYKVPTPIQRKTI-PLILEGRDVVAMAKTGSGKTACFLIPLFEKL--QRREPTK 164
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+A+I++PTR+LA+Q +K+L + +S+ ++GG ++D +HT P++I
Sbjct: 165 GARALILSPTRELAVQTYKFIKELGR----FMELKSILVLGGDSMDSQFSAIHTC-PDVI 219
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
V TPGR + + K +++ V DEAD L ++GF +LNE +
Sbjct: 220 VATPGRFLHLCVEMDLK-LNSIEYVVFDEADRLFEMGF-------GEQLNETLHRLPSSR 271
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+T++FSAT+ + E A +N + +D +S+ D++ K + + + AL
Sbjct: 272 QTVMFSATLPKLLVEFARAGLNDPVLIRLDV----ESKLPDALALKFLYCRP-DDRYTAL 326
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
+ ++ + + + ++F T V+ S L+E+ + + +D R
Sbjct: 327 VVLLKYVIPVQS--QTVVFAGTQHHVELISYILTEAGISNASV---YSSLDPAARKINTA 381
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
+F + + TDV ARG+ PS++ V L P ++HR+GR ARAG +G A
Sbjct: 382 KFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTA 437
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 144 bits (364), Expect = 3e-34
Identities = 136/479 (28%), Positives = 218/479 (45%), Gaps = 79/479 (16%)
Query: 114 VFKSKSFNVTTLNPESFHEQVTID------------SLLEESLLDANVHKAISAMKFESL 161
+F S T +N E V I+ SL SLL +++ + M+ +
Sbjct: 111 LFTSNREITTAVNTNIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQK---MRIKKP 167
Query: 162 TPVQQRTIKPILTT--ENDVVAKAKTGTGKTLAFLAPLFQHLIS--TKLQNPLAVKAVIV 217
T +Q++ I I+ +ND A+TG+GKTL++L P+ +++ T + A+++
Sbjct: 168 TSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVI 227
Query: 218 TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI 277
PTR+LA QI L C L LIGG KS K N I+GTPGR+
Sbjct: 228 APTRELASQIYHVCSTLVSCCHYLVP---CLLIGGER-KKSEKARLRKGCNFIIGTPGRV 283
Query: 278 NDILDR---VGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRT-- 332
D L + + + + + VLDE D L+++GF +S I + +++ E+ +
Sbjct: 284 LDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPH 343
Query: 333 ----LLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE----AHDSIDQKLVIT--KS 382
+L SAT+ V L + KD I K DS+ A D + Q++ I K
Sbjct: 344 KLVHMLCSATLTDGVNRLRNVAL--KDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKL 401
Query: 383 FAESMVALIQSIESELL----QKKNFKAILFLPTVKFVDFFSETLSES------------ 426
++ A + +I + + Q K + I+F+ V+F + S S
Sbjct: 402 RLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSV 461
Query: 427 --LTKR--------------IDIIKFHGKIDQKKRTKLVDRFKKTN------HGIFVCTD 464
LTK + I K HG + Q+ RT + F + N H I CTD
Sbjct: 462 RLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTD 521
Query: 465 VGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLF-REELKFVDELR 522
V +RG+ P V V +L P ++ +++HR+GRTARAGE G + +FL EE K++D ++
Sbjct: 522 VASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQ 580
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 144 bits (363), Expect = 4e-34
Identities = 116/404 (28%), Positives = 201/404 (49%), Gaps = 41/404 (10%)
Query: 132 EQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTL 191
E V S EE L ++ + I A +E+ + VQ R I I DV+A+A++GTGKT
Sbjct: 15 EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR-DVIAQAQSGTGKTA 73
Query: 192 AFLAPLFQHL-ISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQ-----QCNPSLKSYR 245
F + Q + +S + +A+I++PTR+LA+QI + V L QC+
Sbjct: 74 TFSIGILQSIDLSVR-----DTQALILSPTRELAVQIQNVVLALGDHMNVQCH------- 121
Query: 246 SLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ 305
IGGT++ +K L +++ GTPGR+ D++ R + ++V +LDEAD LL
Sbjct: 122 --ACIGGTSVGNDIKKLD-YGQHVVSGTPGRVTDMIRRRNLRT-RNVKMLILDEADELLN 177
Query: 306 IGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKN 365
GF+ ++ I R L TQ ++ SAT+ +V E+ NK + + K
Sbjct: 178 QGFKEQIYDIYRYLPP-GTQ------VVVVSATLPQDVLEMT----NKFTTNPVRILVKR 226
Query: 366 DSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSE 425
D + + Q + + L ++ + + A++F + + VD+ +E + E
Sbjct: 227 DELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ----AVIFCNSRRKVDWLTEKMRE 282
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
+ + HG++ QK+R ++ F++ N + +CTD+ ARG+ V V +P
Sbjct: 283 A---NFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPA 339
Query: 486 SLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVI 529
+ NYIHRIGR+ R G G A F+ E+++ + ++ + + VI
Sbjct: 340 NRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVI 383
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 144 bits (362), Expect = 6e-34
Identities = 121/430 (28%), Positives = 206/430 (47%), Gaps = 40/430 (9%)
Query: 109 NSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLT------ 162
N DI+ ++ KS V++L+ + D+ LEE+L A S T
Sbjct: 98 NGDIDEYEKKSKRVSSLDTSTHKSS---DNKLEETLTREQKEGAFSNFPISEETIKLLKG 154
Query: 163 -------PVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK--LQNPLAVK 213
P+Q +T P+ + D++A+A+TGTGKT +F PL + L + ++ + K
Sbjct: 155 RGVTYLFPIQVKTFGPVYEGK-DLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPK 213
Query: 214 AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGT 273
+++ PTR+LA Q+A + K + + GGT+ + + +I+VGT
Sbjct: 214 VLVLAPTRELANQVAKDFKDIT------RKLSVACFYGGTSYQSQINHIRN-GIDILVGT 266
Query: 274 PGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTL 333
PGRI D L G + VLDE D +L +GF ++ I + + T E++ +TL
Sbjct: 267 PGRIKDHLQS-GRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE--SYKTDSEDNPQTL 323
Query: 334 LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQS 393
LFSAT V ++A M K +D V K +A +++ L I +++ +
Sbjct: 324 LFSATCPQWVYKVAKKYM-KSRYEQVDLVGKMTQKAATTVEH-LAIQCHWSQRPAVIGDV 381
Query: 394 IESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFK 453
++ + +AI+F T K V + ++ + + + HG I Q +R + F+
Sbjct: 382 LQ--VYSGSEGRAIIFCETKKNVTEMA--MNPHIKQNAQCL--HGDIAQSQREITLKGFR 435
Query: 454 KTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL--- 510
+ + + V T+V ARG+ P V+ V Q P + +YIHR GRT RAG +G F
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495
Query: 511 FREELKFVDE 520
R +L++V++
Sbjct: 496 ERGQLRYVEQ 505
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 144 bits (362), Expect = 6e-34
Identities = 119/406 (29%), Positives = 205/406 (50%), Gaps = 24/406 (5%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+ + K+ +T VQ I P D++ A+TG+GKTLAF+ P+ + L +
Sbjct: 84 RGLKDAKYVDMTDVQSAAI-PHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPED 142
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
V +I++PTR+LA Q + K+ + + K L + G +D + +H + NI+
Sbjct: 143 GVGCIIISPTRELAAQTFGVLNKVGKFH---KFSAGLLIGGREGVDVEKERVHEM--NIL 197
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
V PGR+ +D + +LDEAD +L F+ +L I +L +H
Sbjct: 198 VCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL-------PKHR 250
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+TLLFSAT V++LA ++ +D +I + + S+ Q ++I + + L
Sbjct: 251 QTLLFSATQTKKVKDLAR--LSLRDPEYISVHAEAVTATPTSLMQTVMIV-PVEKKLDML 307
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
I++ L N + ++FL T K V F E ++ L I + HGK+ Q+KR +
Sbjct: 308 WSFIKTHL----NSRILVFLSTKKQVKFVHEAFNK-LRPGIPLKSLHGKMSQEKRMGVYS 362
Query: 451 RFKKTNHGIFVCTDVGARGMHF-PSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF 509
+F + +F CTDV ARG+ F +V+ V Q+ P + +YIHR+GRTAR G + +F
Sbjct: 363 QFIERQSVLF-CTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLF 421
Query: 510 LFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSIITNNPD 555
L E K +++L ++ V IK + + +E ++++++ PD
Sbjct: 422 LTPSEEKMIEKL-QEAKVPIKLIKANNQKLQEVSRLLAALLVKYPD 466
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 144 bits (362), Expect = 6e-34
Identities = 109/369 (29%), Positives = 185/369 (49%), Gaps = 39/369 (10%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAV 212
++A ++ TP+Q + + P + D++ A TG+GKTL F+ P+ + + P
Sbjct: 192 LAAKGIKNPTPIQVQGL-PTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFER 250
Query: 213 K----AVIVTPTRDLAIQ----IASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
+I+ P+R+LA Q I K LQ C + RS +GG + ++L D+ +
Sbjct: 251 NEGPYGLIICPSRELAKQTHEIIQHYSKHLQACG--MPEIRSCLAMGGLPVSEAL-DVIS 307
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVD---FKVLDEADTLLQIGFQTELSLISRKLNE 321
+I+V TPGR+ D+LD K +D + +DEAD ++ +GF+ ++ I +
Sbjct: 308 RGVHIVVATPGRLMDMLD----KKILTLDMCRYLCMDEADRMIDMGFEEDVRTI---FSF 360
Query: 322 FNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK 381
F Q + TLLFSATM +Q A + + K + + A ++ Q++ K
Sbjct: 361 FKGQRQ----TLLFSATMPKKIQNFARSALVKPVTINVGRA----GAASMNVTQQVEYVK 412
Query: 382 SFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKID 441
A+ + L + LQK ++F + VD E L L K ++ + HG D
Sbjct: 413 QEAKVVYLL------DCLQKTAPPVLIFAEKKQDVDCIHEYL---LLKGVEAVAIHGGKD 463
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAG 501
Q++R++ VD ++ + V TDV ++G+ FP+V+HV +P + NY+HRIGRT R+
Sbjct: 464 QEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSN 523
Query: 502 ESGAATIFL 510
G AT +
Sbjct: 524 TKGLATTLI 532
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 143 bits (361), Expect = 8e-34
Identities = 109/360 (30%), Positives = 186/360 (51%), Gaps = 39/360 (10%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVK----AVIV 217
TP+Q + I P + + D++ A TG+GKTL F P+ + + + P + + +I+
Sbjct: 205 TPIQIQGI-PTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 218 TPTRDLAIQ----IASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGT 273
P+R+LA Q + + LQ+ + L R IGG ++ + ++ + +++V T
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL--LRCALCIGGMSVKEQMETIRH-GVHMMVAT 320
Query: 274 PGRINDILDRVGAKYFKDVD---FKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
PGR+ D+L K +D + LDEAD ++ +GF+ ++ I + F Q +
Sbjct: 321 PGRLMDLLQ----KKMVSLDICRYLALDEADRMIDMGFEGDIRTI---FSYFKGQRQ--- 370
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
TLLFSATM +Q A + + K + V + + + D I Q++ K A+ + L
Sbjct: 371 -TLLFSATMPKKIQNFAKSALVKPVTI---NVGRAGAASLDVI-QEVEYVKEEAKMVYLL 425
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
E LQK ++F VD E L L K ++ + HG DQ++RTK ++
Sbjct: 426 ------ECLQKTPPPVLIFAEKKADVDAIHEYL---LLKGVEAVAIHGGKDQEERTKAIE 476
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
F++ + V TDV ++G+ FP+++HV +P + NY+HRIGRT R+G +G AT F+
Sbjct: 477 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 143 bits (361), Expect = 8e-34
Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 36/399 (9%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
+S + ++ + + + TP+QQ T+ P++ D++A A+TG+GKT AFL P+ L
Sbjct: 302 DSDIPQSMRRNVERAGYTRTTPIQQYTL-PLVADGKDILACAQTGSGKTAAFLLPIMSRL 360
Query: 202 ISTKLQNPLAV-----KAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLI----GG 252
I K N A + +I+TPTR+LA QI +E +K SY+S+ I GG
Sbjct: 361 ILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKF--------SYQSVMEIKPVYGG 412
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ-IGFQTE 311
N+ + + IIVGT GR+ + GA + VLDEAD ++ +GF E
Sbjct: 413 INVGYNKSQIMK-GCTIIVGTIGRVKHFCED-GAIKLDKCRYLVLDEADRMIDSMGFGPE 470
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
+ I +N N + +T++FSAT +VQE A ++ ++D I T+DK +
Sbjct: 471 IEQI---INYKNMPKNDKRQTMMFSATFPSSVQEAARKLL-REDYTMI-TIDKIGAANKC 525
Query: 372 SIDQ-KLVITKSFAESMVALIQSIESELLQKKNF-----KAILFLPTVKFVDFFSETLSE 425
I + +L S + ++ L+ +KN K I+F+ K D + +S
Sbjct: 526 VIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSA 585
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
+ ++ I HG +QK+R+ + F+ + + T V RG+ V+HV +P
Sbjct: 586 A---QVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPN 642
Query: 486 SLPNYIHRIGRTARAGESGAATIFL-FREELKFVDELRR 523
++ +YIHRIGRT R G SG AT F+ ++++ + +L R
Sbjct: 643 NIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVR 681
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 143 bits (360), Expect = 1e-33
Identities = 123/407 (30%), Positives = 197/407 (48%), Gaps = 56/407 (13%)
Query: 122 VTTLNP----ESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTEN 177
VT NP E F E + ++L ++++ + T +Q+ I P + ++
Sbjct: 40 VTGNNPVDPIEEFPEGILCENLKKQNITEC--------------TTIQRYAI-PTIGSKR 84
Query: 178 DVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQC 237
D++A A TG+GKT+A+L P+ Q L +L P +A+IV PTR+L QI + +KL
Sbjct: 85 DLLACAPTGSGKTIAYLFPILQKL---QLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFG 141
Query: 238 NPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNI------IVGTPGRINDILDRVGAKYFKD 291
SL +I L KS + + P + +GTP R+ + F+
Sbjct: 142 T-------SLKII---ELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQT--GLSFEK 189
Query: 292 VDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIM 351
V+F V+DEAD L + GF + I N I LFSAT+ V+ELA +
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSN------ICKSLFSATIPSRVEELAKVVT 243
Query: 352 NKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLP 411
+ + D A DSIDQ+L+ S +V L Q I + L+ + ++F
Sbjct: 244 VDPIRIIVGLKDA----ATDSIDQRLLFVGSDTSKIVILRQMISNGELKPR---VVIF-- 294
Query: 412 TVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMH 471
V+ ++ +E L I + HG++ Q KR + + +F+K + + TD+ ARG+
Sbjct: 295 -VQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGID 353
Query: 472 FPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFV 518
F V+ V P S+ +YIHRIGRT RAG +G A F +E+ +++
Sbjct: 354 FHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYI 400
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 143 bits (360), Expect = 1e-33
Identities = 109/405 (26%), Positives = 200/405 (48%), Gaps = 40/405 (9%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL----ISTKL 206
K+I + TP+Q + PI+ D++ A+TGTGKTL++L P F HL IS +
Sbjct: 235 KSIIRVGIVKPTPIQSQAW-PIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 293
Query: 207 QNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
+N + +++TPTR+LA+ + +E K S K +S+ + GG N + ++D+ +
Sbjct: 294 RNGPGM--LVLTPTRELALHVEAECSKY-----SYKGLKSICIYGGRNRNGQIEDI-SKG 345
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+II+ TPGR+ND L + + + + V+DEAD +L + F+ ++ I +
Sbjct: 346 VDIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR--- 401
Query: 327 EEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES 386
+T++ SAT V++LA + + +++ ++ A +++ Q +++T +
Sbjct: 402 ----QTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNL---VAVNTVKQNIIVTTE--KE 452
Query: 387 MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRT 446
AL Q + N K I+F+ D S S+ + I HG +Q +
Sbjct: 453 KRALTQEFVENM--SPNDKVIMFVSQKHIADDLS---SDFNIQGISAESLHGNSEQSDQE 507
Query: 447 KLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
+ V+ FK N I + TD+ +RG+ V HVY P ++ Y+HR+G R G++G +
Sbjct: 508 RAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTS 567
Query: 507 TIFLFREELKFVDELRR---------DTNVVIKNQEDYLNQDKEN 542
+ + + K EL + ++V+ ++ LNQ K +
Sbjct: 568 VTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRH 612
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 142 bits (359), Expect = 1e-33
Identities = 118/380 (31%), Positives = 186/380 (48%), Gaps = 29/380 (7%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+ I A FE + +QQR I PIL E DV+A+A++GTGKT F + Q I T L+
Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILG-ERDVLAQAQSGTGKTATFSISVLQK-IDTSLKQ-- 87
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+A+I+ PTR+LA QI V L L + IGGT + + L +++
Sbjct: 88 -CQALILAPTRELAQQIQKVVVALGD----LMNVECHACIGGTLVRDDMAALQA-GVHVV 141
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
VGTPGR++D++ R A V VLDEAD +L GF+ ++ I + L
Sbjct: 142 VGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLL-------PPTA 193
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+ +L SATM +V E+ M + + K D + I Q V + + L
Sbjct: 194 QVVLLSATMPQDVLEVTTKFMRDPIRILV----KKDELTLEGIKQFYVAVEKEEWKLDTL 249
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
E+ + + A++F T + VD+ +E L+E + + HG +DQ +R L+
Sbjct: 250 CDLYETVTVTQ----AVIFCNTRRKVDWLTEQLTE---RDFTVSSMHGDMDQAQRDTLMH 302
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
F+ + I + TD+ ARG+ V V +P + NYIHRIGR R G G + F+
Sbjct: 303 EFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFV 362
Query: 511 FREELKFVDELRRDTNVVIK 530
++++ + E+ + N I+
Sbjct: 363 TNDDVRMMREIEQFYNTHIE 382
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 142 bits (358), Expect = 2e-33
Identities = 112/400 (28%), Positives = 186/400 (46%), Gaps = 27/400 (6%)
Query: 108 ENSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQR 167
E + E+ K +F +S T S + L + K +S + FE T +Q +
Sbjct: 231 EEDEEEIAKKNAFFAEGDKEKSM--MTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDK 288
Query: 168 TIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQI 227
TI P+ D+V A TG+GKT AF+ P+ + L+ + P + +I+ PTR+LA+Q
Sbjct: 289 TI-PLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP-TTRVLILCPTRELAMQC 346
Query: 228 ASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAK 287
S K+ S IGG +L ++L P+I++ TPGR D +
Sbjct: 347 HSVATKIA----SFTDIMVCLCIGGLSLKLQEQELRK-RPDIVIATPGRFIDHMRNSQGF 401
Query: 288 YFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELA 347
++++ V+DEAD +L+ GF EL NE + +T+LFSATM V +L
Sbjct: 402 TVENIEIMVMDEADRMLEDGFADEL-------NEIIQACPKSRQTMLFSATMTDKVDDLI 454
Query: 348 ATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESM-VALIQSIESELLQKKNFKA 406
+N+ +F+D N + Q+ V + E + A++ + EL ++
Sbjct: 455 RLSLNRPVRVFVD----NKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRT--- 507
Query: 407 ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
I+F + F ++ + HG + Q++R + ++ F+ + TDV
Sbjct: 508 IIFFRSKAFAHKMRVIFG---LLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVA 564
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
+RG+ +E V P + Y+HR+GRTARAG SG A
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRA 604
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 142 bits (358), Expect = 2e-33
Identities = 112/373 (30%), Positives = 178/373 (47%), Gaps = 30/373 (8%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI--STKLQNPL 210
I+ M F +P+Q + PIL +D++ A+TGTGKTLAFL P H ST
Sbjct: 298 ITKMGFSKPSPIQSQAW-PILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRG 356
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+++ PTR+LA+QI EVKK S + +++ + GG N + + DL II
Sbjct: 357 GANVLVLAPTRELALQIEMEVKKY-----SFRGMKAVCVYGGGNRNMQISDLER-GAEII 410
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
+ TPGR+ND++ + + VLDEAD +L +GF+ ++ + +
Sbjct: 411 ICTPGRLNDLI-MANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDR------- 462
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+T++ SAT V+ LA + M + + ++D A S+ Q + + + + +
Sbjct: 463 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDL---AATHSVKQIIKLMEDDMDKFNTI 519
Query: 391 IQSIESELLQKKNFKAILFLPT-VKFVDFFSE-TLSESLTKRIDIIKFHGKIDQKKRTKL 448
+++ K I+F V+ D SE TL +T+ I HG DQ R +
Sbjct: 520 TSFVKN---MSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCI-----HGNRDQMDREQA 571
Query: 449 VDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATI 508
+ K I V TDV +RG+ + HV P ++ Y+HR+GRT RAG G +
Sbjct: 572 IADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSIS 631
Query: 509 FLFREELKFVDEL 521
F RE+ EL
Sbjct: 632 FFTREDWAMAKEL 644
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 142 bits (357), Expect = 2e-33
Identities = 115/385 (29%), Positives = 183/385 (46%), Gaps = 42/385 (10%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTR 221
T +Q I P+ D++ A+TG+GKT AF P+ L+ T P + A+++TPTR
Sbjct: 48 TKIQIEAI-PLALQGRDIIGLAETGSGKTGAFALPILNALLET----PQRLFALVLTPTR 102
Query: 222 DLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLN-PNIIVGTPGRINDI 280
+LA QI+ + + L S +S ++GG +D + L P+II+ TPGR+ D
Sbjct: 103 ELAFQISEQFEALG----SSIGVQSAVIVGG--IDSMSQSLALAKKPHIIIATPGRLIDH 156
Query: 281 LDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMD 340
L+ + + + V+DEAD +L + F+TE+ I + + +T LFSATM
Sbjct: 157 LENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI-------PRDRKTFLFSATMT 209
Query: 341 HNVQEL-AATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELL 399
VQ+L A + N C V + I F ++ + I L
Sbjct: 210 KKVQKLQRAALKNPVKC----AVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI------LN 259
Query: 400 QKKNFKAILFLPTVKFVDFFSETLSESLTKR---IDIIKFHGKIDQKKRTKLVDRFKKTN 456
+ ++F T + T +L R I HG++ Q KR +++FK
Sbjct: 260 ELAGNSFMIFCSTC------NNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKA 313
Query: 457 HGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
I + TDV +RG+ P V+ V +PT +YIHR+GRTARAG SG A F+ + +
Sbjct: 314 RSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD-- 371
Query: 517 FVDELRRDTNVVIKNQEDYLNQDKE 541
V+ +R +++ K + QD E
Sbjct: 372 -VELFQRIEHLIGKKLPGFPTQDDE 395
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 142 bits (357), Expect = 2e-33
Identities = 123/442 (27%), Positives = 205/442 (45%), Gaps = 51/442 (11%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI-- 202
L V +AI M F T +Q + + DV+ A+TG+GKTLAF PL L+
Sbjct: 162 LPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLES 221
Query: 203 --------STKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
ST+++ P +A+IV PTR+L IQI + L + + +++GG
Sbjct: 222 SDDSQETESTEVRGP---RALIVAPTRELVIQIMKHINALISTTQLIAT----SIVGGLA 274
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF----KDVDFKVLDEADTLLQIGFQT 310
K + + P+I+V TPGR+ ++ F KD+ V+DE D +++ G+
Sbjct: 275 QVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFA 334
Query: 311 ELSLISRKLNEFNTQGEEHIRTLLFSATMDH-NVQELAATIMNKKDCLFIDTVDKND--- 366
EL+ I K++E + + E ++TL+FSAT+ Q++A KK + + K
Sbjct: 335 ELTHILNKIHEESEK--EKLQTLVFSATLTFAKAQDVAEE--EKKKAKELSSQQKIQRLI 390
Query: 367 ------SEAHDSID--QKLVITKSFAESMVALIQSIESE-----LLQKKNFKAILFLPTV 413
H ID +++ E+ + +E + LL + + I+F V
Sbjct: 391 KLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVF---V 447
Query: 414 KFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFP 473
+D S + ID + H K+ QK+R K +++F ++ + + + TDV ARG+
Sbjct: 448 NSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQ 507
Query: 474 SVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL------RRDTNV 527
++HV VP + YIHR GRTARA G + + +F +L +D NV
Sbjct: 508 GIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLNV 567
Query: 528 VIKNQEDYLNQDKENFDMISSI 549
+ E +N K+ + S I
Sbjct: 568 FPIDFEPLMNAIKKRVRLASEI 589
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 142 bits (357), Expect = 2e-33
Identities = 126/446 (28%), Positives = 215/446 (47%), Gaps = 53/446 (11%)
Query: 108 ENSDIEVFKSKSFNVTTLNPESFHEQVTIDS-----------LLEESLLDANVHKAISAM 156
E++ EVF + + + + F +V I S E+ L + K ++
Sbjct: 511 EDNMEEVFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHA 570
Query: 157 KFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI-----STKLQNPLA 211
+ TP+QQ T+ P++ +D++A A+TG+GKT AFL P+ LI +T +
Sbjct: 571 GYTKTTPIQQYTL-PLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLI----GGTNLDKSLKDLHTLNP 267
+ +I+TPTR+L QI +E +K +Y+++ I GG + + +
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKF--------AYQTMMEIRPVYGGLAVGYNKGQIEK-GA 680
Query: 268 NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ-IGFQTELSLISRKLNEFNTQG 326
IIVGT GRI + K K F VLDEAD ++ +GF T++ I +N +
Sbjct: 681 TIIVGTVGRIKHFCEEGTIKLDK-CRFFVLDEADRMIDAMGFGTDIDTI---VNYESMPK 736
Query: 327 EEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDK---------NDSEAHDSIDQKL 377
+E+ +TL+FSAT +VQE A + K+ + +DK + E D ++K
Sbjct: 737 KENRQTLMFSATFPDSVQEAARNHL--KEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKD 794
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
+ + + + SE+ KK I+F+ D + LS + ++ I H
Sbjct: 795 KLLEILGIDIDSYTTEKNSEVYTKKT---IVFVSQRAMADTLASILSSA---QVPAITIH 848
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
G +Q++R++ + +F+ + + + T V RG+ V+HV +P ++ +YIHRIGRT
Sbjct: 849 GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 908
Query: 498 ARAGESGAATIFLFREELKFVDELRR 523
R G +G AT F+ E+ + EL R
Sbjct: 909 GRVGNAGRATSFI-SEDCNLLSELVR 933
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 142 bits (357), Expect = 2e-33
Identities = 108/384 (28%), Positives = 190/384 (49%), Gaps = 34/384 (8%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
L+E LL + I A FE + +QQR+I PI+ DV+A+A++GTGKT F + Q
Sbjct: 33 LKEELL-----RGIYAYGFEKPSAIQQRSITPIVKGR-DVIAQAQSGTGKTATFSISILQ 86
Query: 200 HLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
L +T + + + ++PTR+LA+QI + L + + + IGGTNL + +
Sbjct: 87 SLDTTLRET----QVLCLSPTRELAVQIQKVILALGD----MMNVQCHVCIGGTNLGEDI 138
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
+ L +I+ GTPGR+ D++ R + + + VLDEAD +L GF+ ++ + R L
Sbjct: 139 RKLD-YGQHIVSGTPGRVFDMIKRRVLRT-RAIKMLVLDEADEMLNKGFKEQIYDVYRYL 196
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+ +L SAT+ H + E+ + M + + K D + I Q V
Sbjct: 197 PPAT-------QVVLISATLPHEILEMTSKFMTDPIRILV----KRDELTLEGIKQFFVA 245
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
+ L ++ + + A++F T + VD+ +E + E+ + HG
Sbjct: 246 VEREEWKFDTLCDLYDTLTITQ----AVIFCNTKRKVDWLTEKMREA---NFTVSSMHGD 298
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
+ QK+R +++ F+ + + TDV ARG+ V V +P + YIHRIGR+ R
Sbjct: 299 MPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 358
Query: 500 AGESGAATIFLFREELKFVDELRR 523
G G A F+ ++++ + ++ +
Sbjct: 359 FGRKGVAINFVKSDDIRILRDIEQ 382
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 141 bits (356), Expect = 3e-33
Identities = 101/342 (29%), Positives = 163/342 (47%), Gaps = 49/342 (14%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L ++ +A+ FE TPVQ TI P L + DVV A TG+GKTLAFL P + + +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETI-PFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 82
Query: 205 KLQ--NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
P V VI++PTR+L+ QI + ++ L ++ + L
Sbjct: 83 NSYPPKPHQVMGVIISPTRELSAQIHKVARAVR-----------LDFAKCREVEADMNTL 131
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
N+++GTPGR++D++ R+ F++++ +LDEAD LL +GFQ +++ I +L
Sbjct: 132 EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL--- 188
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ RT LFSAT V +LA + + L + K+ H
Sbjct: 189 ----PKQRRTGLFSATQTQAVADLAKAGL-RNPYLKCEADQKSSQLVH------------ 231
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSE-SLTKRIDIIKFHGKID 441
L++ KN K ++F T VD++ +S+ K I HGK+D
Sbjct: 232 --------------LLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMD 277
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCV 483
QK R + F + + G+ +CTDV ARG+ P + ++ L +
Sbjct: 278 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAI 319
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 141 bits (355), Expect = 4e-33
Identities = 105/383 (27%), Positives = 186/383 (48%), Gaps = 33/383 (8%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L + + + + +E P+Q + + PI+ + D + AKTG+GKTL F+ P+ +H+
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQAL-PIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI--- 591
Query: 205 KLQNPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
K Q P+ +++ PTR+L QI S+++K + R + + GG+ + + +
Sbjct: 592 KDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP----LGIRCVPVYGGSGVAQQIS 647
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRK 318
+L I+V TPGR+ DIL K + V F V+DEAD + +GF+ +++ I +
Sbjct: 648 ELKR-GTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQN 706
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
+ +T+LFSAT V+ LA ++NK ++ S + I Q LV
Sbjct: 707 IRPER-------QTVLFSATFPRQVETLARKVLNKP----VEIQVGGRSVVNKDITQ-LV 754
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHG 438
+ ++ + L++ + E +K K ++F+ + + D + +S + HG
Sbjct: 755 EVRPESDRFLRLLELL-GEWSEKG--KILVFVQSQEKCDALYRDMIKS---SYPCLSLHG 808
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTA 498
DQ R + FK + + T V ARG+ +E V P +Y+HR+GRT
Sbjct: 809 GKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 868
Query: 499 RAGESGAATIFLFREELKFVDEL 521
RAG G A F+ ++ K+ +L
Sbjct: 869 RAGRKGCAVTFISEDDAKYAPDL 891
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 140 bits (354), Expect = 5e-33
Identities = 114/390 (29%), Positives = 192/390 (49%), Gaps = 31/390 (7%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
E+ L +H+ + KF+ T +Q + PI + D+++ AKTG+GKTLAF+ P H+
Sbjct: 134 EAPLPGQIHELLYG-KFQKPTVIQSISW-PIAMSGRDIISIAKTGSGKTLAFMLPALVHI 191
Query: 202 ISTKLQNPLAVKAVIVT-PTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
+ AV+V PTR+LA Q+ + + C+ + L GG + +
Sbjct: 192 TKQAHRQRGEGPAVLVLLPTRELAQQV--QEVSIDFCHSL--GLKMTCLFGGASKGPQAR 247
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
DL +I+V TPGR+ D LD G K + VLDEAD +L +GF+ ++ I ++
Sbjct: 248 DLER-GVDIVVATPGRLLDFLDN-GTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIR 305
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
+TL+FSAT V+ LA+ +KD F++ V + A+ +I Q + I
Sbjct: 306 PDR-------QTLMFSATWPKEVRALASDF--QKDAAFLN-VGSLELAANHNITQVVDIL 355
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
+ A+ A + + + ++ +K K I+F+ T + D + + + I HG
Sbjct: 356 EEHAKQ--AKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCI---HGDK 410
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
+Q +R ++ FK I + TDV ARG+ ++ V P + +Y+HRIGRT R+
Sbjct: 411 NQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRS 470
Query: 501 GESGAATIFL-------FREELKFVDELRR 523
+ G A F ++ LK +DE ++
Sbjct: 471 DKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 140 bits (354), Expect = 5e-33
Identities = 106/345 (30%), Positives = 168/345 (47%), Gaps = 36/345 (10%)
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAI 225
Q+ P DV+ A+TG+GKT AF P+ Q L L +P A +++TPTR+LA
Sbjct: 71 QQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSL----LDHPQAFFCLVLTPTRELAF 126
Query: 226 QIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVG 285
QI + + L S + ++GG ++ L P+IIV TPGR+ D L+
Sbjct: 127 QIGQQFEALG----SGIGLIAAVIVGGVDMAAQAMAL-ARRPHIIVATPGRLVDHLENTK 181
Query: 286 AKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQE 345
K + F ++DEAD +L + F+ EL I + + RT LFSATM V +
Sbjct: 182 GFNLKALKFLIMDEADRILNMDFEVELDKILKVI-------PRERRTYLFSATMTKKVSK 234
Query: 346 LAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV-ITKSFAESMVALIQSIESELLQKKNF 404
L + + + + K D++ Q + + + E+ + + L +
Sbjct: 235 LERASLRDPARVSVSSRYKTV----DNLKQHYIFVPNKYKETYLVYL------LNEHAGN 284
Query: 405 KAILFLPTVKFVDFFSETLSESLTKR---IDIIKFHGKIDQKKRTKLVDRFKKTNHGIFV 461
AI+F T + T+ ++ R + + HG++ Q+KR +++FK I V
Sbjct: 285 SAIVFCATC------ATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 462 CTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
CTDV ARG+ P V+ V +P+ +Y+HR+GRTARAG SG A
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIA 383
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 140 bits (353), Expect = 6e-33
Identities = 110/383 (28%), Positives = 189/383 (48%), Gaps = 31/383 (8%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTEN--DVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
I ++F S TP+Q+ TI + + D + A TG+GKTLAF+ P+ + + + P
Sbjct: 189 IQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPS 248
Query: 211 -----AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSY--RSLTLIGGTNLDKSLKDLH 263
KA+I+ PTR+L QI E +K+ + +Y + ++++GG +L++ L
Sbjct: 249 LKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLS 308
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFN 323
+I+V TPGR+ D L+ K V+ VLDEAD ++ +GF+ +++ I K+ + N
Sbjct: 309 E-GCDILVATPGRLIDSLEN-HLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKV-DIN 365
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
+ +TL+F+ATM ++++AA M K I + + Q++V
Sbjct: 366 ADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGV-----ETGSEPLIQQVVEYADN 420
Query: 384 AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
E ++ I + K + I+F+ + D+ +E + ++ I+ HG Q+
Sbjct: 421 DEDKFKKLKPI----VAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTIL--HGSKSQE 474
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
+R + F+ I + T+V ARG+ P+V V + + +YIHRIGRT RA
Sbjct: 475 QREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANE 534
Query: 504 GAATIF--------LFREELKFV 518
G A F L RE K+V
Sbjct: 535 GTAVSFVSAAEDESLIRELYKYV 557
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 140 bits (352), Expect = 8e-33
Identities = 109/403 (27%), Positives = 197/403 (48%), Gaps = 43/403 (10%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE+ L + + K + + ++ + +Q+ I P+L D++ A+TG+GKT AF+ PL
Sbjct: 252 EEAGLPSEMLKVLKKVNYKEPSSIQRAAI-PVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 201 LIS----TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
+ T+ L AV++ PTR+LA QI E K + +R ++++GG +
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP----LGFRCVSVVGGHAFE 366
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ + + +I+V TPGR+ D L+R + V+DEAD +L +GF+ +++ I
Sbjct: 367 EQSFQM-SQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDVNKIL 424
Query: 317 RKLNEFNTQGEE------------HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDK 364
L N ++ +T++FSAT+ V LA + + + L I +
Sbjct: 425 SSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI-- 482
Query: 365 NDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLS 424
+A D ++Q++ + ++ + E+L+ F P + FV+
Sbjct: 483 --GQAVDRVEQRVEMISDDSKKWRRV-----EEILESNRFSP----PIIIFVNLKRNI-- 529
Query: 425 ESLTKRIDIIKFH-----GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVY 479
E++ K+++ I +H G Q++R + +++ + I V TD+ RG+ P+V V
Sbjct: 530 EAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVL 589
Query: 480 QLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELR 522
+ S+ +Y HRIGRT RAG+SG A FL E+ +LR
Sbjct: 590 NYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLR 632
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 140 bits (352), Expect = 8e-33
Identities = 127/429 (29%), Positives = 201/429 (46%), Gaps = 34/429 (7%)
Query: 106 QDE-NSDIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPV 164
+DE SD K KS L E +V + + + + A + + + A E+L P+
Sbjct: 65 EDEVKSDSSSEKKKSSKKVKLGVEDV--EVDNPNAVSKFRISAPLREKLKANGIEALFPI 122
Query: 165 QQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS------TKLQNPLAVKAVIVT 218
Q T +L D+V +A+TG GKTLAF+ P+ + L++ K+ + +++
Sbjct: 123 QASTFDMVLDGA-DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 219 PTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRIN 278
PTR+LA Q+A++ SL S L GG + L +I+VGTPGRI
Sbjct: 182 PTRELAKQVAAD---FDAYGGSL-GLSSCCLYGGDSYPVQEGKLKR-GVDIVVGTPGRIK 236
Query: 279 DILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSAT 338
D ++R F + F+VLDEAD +L++GF ++ LI K+ + ++TLLFSAT
Sbjct: 237 DHIERQNLD-FSYLQFRVLDEADEMLRMGFVEDVELILGKVED-----STKVQTLLFSAT 290
Query: 339 MDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESEL 398
+ V+ ++ + K+D ID V + +A +S+ + A M LI I S
Sbjct: 291 LPSWVKNISNRFL-KRDQKTIDLVGNDKMKASNSVRHIAIPCNKAA--MARLIPDIIS-- 345
Query: 399 LQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHG 458
+ I+F T V S L S HG+I Q +R + F+
Sbjct: 346 CYSSGGQTIIFAETKVQVSELSGLLDGSRA-------LHGEIPQSQREVTLAGFRNGKFA 398
Query: 459 IFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFV 518
V T+V ARG+ V+ + Q P + YIHR GRT RAG +G A + L+ V
Sbjct: 399 TLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVA-VTLYDSRKSSV 457
Query: 519 DELRRDTNV 527
+ ++ +
Sbjct: 458 SRIEKEAGI 466
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 139 bits (351), Expect = 1e-32
Identities = 113/410 (27%), Positives = 191/410 (46%), Gaps = 65/410 (15%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIV 217
F TP+Q++TI P++ D+V A+TG+GKT AF+ P+ + L S + +AVI+
Sbjct: 157 FRQPTPIQRKTI-PLILQSRDIVGMARTGSGKTAAFILPMVEKLKSH--SGKIGARAVIL 213
Query: 218 TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI 277
+P+R+LA+Q + K + RS+ L GG +L++ + T NP++I+ TPGR
Sbjct: 214 SPSRELAMQTFNVFKDFARGT----ELRSVLLTGGDSLEEQFGMMMT-NPDVIIATPGRF 268
Query: 278 NDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSA 337
+ + K V++ V DEAD L ++GFQ +LNE +TLLFSA
Sbjct: 269 LHLKVEMNLD-LKSVEYVVFDEADRLFEMGFQ-------EQLNELLASLPTTRQTLLFSA 320
Query: 338 TMDHNVQELA---------------ATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
T+ +++ + + + LF+ + + + I Q+++
Sbjct: 321 TLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPL 380
Query: 383 FAESMVALIQSIESEL-----------LQKKNFK--------------------AILFLP 411
+ +Q+ +E +++NFK ILF+P
Sbjct: 381 ATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVP 440
Query: 412 TVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMH 471
T V++ S+ L + I +G +DQ R + + F+ I V TDV ARG+
Sbjct: 441 TRHHVEYISQLLRDC---GYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVD 497
Query: 472 FPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
P + +V +P S ++HR+GRTARAG G A + EL ++ +L
Sbjct: 498 IPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDL 547
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 139 bits (351), Expect = 1e-32
Identities = 105/392 (26%), Positives = 189/392 (47%), Gaps = 29/392 (7%)
Query: 132 EQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTL 191
E+V + + L ++ + I A FE + +QQR IK I+ DV+A++++GTGKT
Sbjct: 32 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTA 90
Query: 192 AFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIG 251
F + Q L + +A+I+ PTR+LA+QI + L + + IG
Sbjct: 91 TFSISVLQCLDIQVRET----QALILAPTRELAVQIQKGLLALGD----YMNVQCHACIG 142
Query: 252 GTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTE 311
GTN+ + ++ L +++ GTPGR+ D++ R + + + VLDEAD +L GF+ +
Sbjct: 143 GTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRT-RAIKMLVLDEADEMLNKGFKEQ 200
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
+ + R L + +L SAT+ H + E+ M + + K D +
Sbjct: 201 IYDVYRYLPPAT-------QVVLISATLPHEILEMTNKFMTDPIRILV----KRDELTLE 249
Query: 372 SIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRI 431
I Q V + L ++ + + A++F T + VD+ +E + E+
Sbjct: 250 GIKQFFVAVEREEWKFDTLCDLYDTLTITQ----AVIFCNTKRKVDWLTEKMREA---NF 302
Query: 432 DIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
+ HG + QK+R ++ F+ + + TDV ARG+ P V + +P + YI
Sbjct: 303 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 362
Query: 492 HRIGRTARAGESGAATIFLFREELKFVDELRR 523
HRIGR+ R G G A F+ ++++ + ++ +
Sbjct: 363 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 139 bits (349), Expect = 2e-32
Identities = 117/389 (30%), Positives = 185/389 (47%), Gaps = 36/389 (9%)
Query: 135 TIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFL 194
+ + L+ D + + F TP+Q I P+ DV+A TG+GKTLAFL
Sbjct: 119 SFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECI-PVALNNRDVLACGPTGSGKTLAFL 177
Query: 195 APLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
PL Q +I K +K +I++PT++LA QI E KL L+ R L +
Sbjct: 178 IPLVQQIIDDK--QTAGLKGLIISPTKELANQIFIECFKLSY-KIFLEKKRPLQV---AL 231
Query: 255 LDKSL------KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
L KSL K + +II+ TP R+ D++ K V + DEAD L F
Sbjct: 232 LSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSK-VKHLIFDEADKLFDKTF 290
Query: 309 QTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
+ + + + E +R +FSAT+ NV+E+A +IM + + +
Sbjct: 291 ------VEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDP----VRVIIGHKEA 340
Query: 369 AHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLS---E 425
A+ +I+QKL+ + ++A+ Q L+Q+ FK P + F++ + + E
Sbjct: 341 ANTNIEQKLIFCGNEEGKLIAIRQ-----LVQEGEFKP----PIIIFLESITRAKALYHE 391
Query: 426 SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT 485
+ RI++ H + +R ++++RFK +CTDV ARG+ F V V VP
Sbjct: 392 LMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPG 451
Query: 486 SLPNYIHRIGRTARAGESGAATIFLFREE 514
S Y+HRIGRT R G SG A F +++
Sbjct: 452 SSQAYVHRIGRTGRGGRSGKAITFYTKQD 480
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 139 bits (349), Expect = 2e-32
Identities = 113/393 (28%), Positives = 195/393 (48%), Gaps = 30/393 (7%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
E+ L + K ++ + TP+QQ + P++ D++A A+TG+GKT AFL P+ L
Sbjct: 345 EANLTETMQKNVAHAGYSKTTPIQQYAL-PLVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
Query: 202 ISTKLQNPLAV-----KAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLI----GG 252
I N + +I+TPTR+LA QI +E +K +Y+++ I GG
Sbjct: 404 IDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF--------AYQTMMEIKPVYGG 455
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ-IGFQTE 311
+ + + IIVGT GRI + K K F VLDEAD ++ +GF T+
Sbjct: 456 LAVGYNKGQIEK-GATIIVGTVGRIKHFCEEGTIKLDK-CRFFVLDEADRMIDAMGFGTD 513
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
+ I +N + +E+ +TL+FSAT +VQE A + + + +DK +
Sbjct: 514 IETI---VNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMI--AIDKIGAANKC 568
Query: 372 SIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVD--FFSETLSESLTK 429
+ + +S + + + I+ + + + T+ FV ++TL+ L+
Sbjct: 569 VLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSS 628
Query: 430 -RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLP 488
++ I HG +Q++R++ + +F+ + + + T V RG+ V+HV +P ++
Sbjct: 629 AQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNID 688
Query: 489 NYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+YIHRIGRT R G SG AT F+ E+ + EL
Sbjct: 689 DYIHRIGRTGRVGNSGRATSFI-SEDCSLLSEL 720
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 138 bits (348), Expect = 2e-32
Identities = 120/422 (28%), Positives = 199/422 (46%), Gaps = 53/422 (12%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
+++ AMK T +Q+ I IL D + AKTG+GKT+AF P+ ++ ++P
Sbjct: 15 ESLRAMKITQPTAIQKACIPKILEGR-DCIGGAKTGSGKTIAFAGPM----LTKWSEDPS 69
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+ V++TPTR+LA+QIA + L S + R ++GG ++ + DL P+ I
Sbjct: 70 GMFGVVLTPTRELAMQIAEQFTALG----SSMNIRVSVIVGGESIVQQALDLQR-KPHFI 124
Query: 271 VGTPGRINDIL-----DRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQ 325
+ TPGR+ + D VG + VLDEAD LL F L+ L
Sbjct: 125 IATPGRLAHHIMSSGDDTVGG--LMRAKYLVLDEADILLTSTFADHLATCISALPP---- 178
Query: 326 GEEHIRTLLFSATMDHNVQELA-ATIMNKKDCLFIDTVDKNDSEAHDSI--DQKLVITKS 382
++ +TLLF+AT+ V+ L A + K LF V+ D+ A S + +++ +
Sbjct: 179 -KDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEH 237
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
E+ + + + E + +N AI+F+ + TL + + + H ++ Q
Sbjct: 238 VKEAYLYQLLTCE----EYENKTAIIFVNRTMTAEILRRTLKQL---EVRVASLHSQMPQ 290
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGE 502
++RT + RF+ I + TDV +RG+ P+VE V +P+ +IHR GRTARAG
Sbjct: 291 QERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGR 350
Query: 503 SGAATIFLFREELKFVDELR-------------RDTNVVIK--------NQEDYLNQDKE 541
G A F+ + ++ + + DT V+ K +E + KE
Sbjct: 351 IGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKE 410
Query: 542 NF 543
NF
Sbjct: 411 NF 412
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 138 bits (348), Expect = 2e-32
Identities = 111/412 (26%), Positives = 196/412 (46%), Gaps = 49/412 (11%)
Query: 135 TIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFL 194
+++ E+ L + KA S + TP+QQ I P+ T D+ A A TGTGKT AF+
Sbjct: 145 SVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACI-PVALTGKDICACAATGTGKTAAFV 203
Query: 195 APLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
P+ + +I + + + +++ PTR+LAIQ+ +KL + GG +
Sbjct: 204 LPILERMIY-RPKGASCTRVLVLVPTRELAIQVFQVFRKLS----TFIQLEVCLCAGGLD 258
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVD--FK----------------- 295
L L + P+++V TPGR+ D L + +++ FK
Sbjct: 259 LKAQEAALRS-GPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIP 317
Query: 296 -----VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATI 350
VLDEAD +L+ F+ ++ NE ++ +TLLFSATM + ELA+
Sbjct: 318 NFQVLVLDEADRMLEEAFRDQM-------NELIRLCAQNRQTLLFSATMTEEIDELASMS 370
Query: 351 MNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES-MVALIQSIESELLQKKNFKAILF 409
+ K +FI+ +++ + Q+ + ++ E+ A++ ++ + Q I+F
Sbjct: 371 LQKPVKIFIN----ENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNT---IVF 423
Query: 410 LPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARG 469
+ T K L I + + + Q +R + + +FKK + V TD+ +RG
Sbjct: 424 VRTKKDCQRMQILLG---LLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRG 480
Query: 470 MHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+ V+ V + +P S+ YIHR+GRTARAG++G + + +E K + E+
Sbjct: 481 LDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEI 532
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 137 bits (346), Expect = 4e-32
Identities = 113/420 (26%), Positives = 201/420 (46%), Gaps = 29/420 (6%)
Query: 111 DIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIK 170
D F K V E F + + L N+ + I A FE + +QQR I
Sbjct: 12 DARQFDQKLNEVLEGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIV 71
Query: 171 PILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASE 230
P DV+ +A++GTGKT F + + Q L + +Q +A+++ PTR+LA QI
Sbjct: 72 PFCKGL-DVIQQAQSGTGKTATFCSGVLQQLDFSLIQ----CQALVLAPTRELAQQI--- 123
Query: 231 VKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFK 290
+K+ + + +GGT++ + + L +++VGTPGR+ D+L R +
Sbjct: 124 -EKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLKRQSLRA-D 180
Query: 291 DVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATI 350
++ VLDEAD +L GF+ ++ I + L I+ +FSATM E+
Sbjct: 181 NIKMFVLDEADEMLSRGFKDQIYDIFQLL-------PPKIQVGVFSATMPPEALEITRKF 233
Query: 351 MNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFL 410
M+K + + K D + I Q V + + L E+ + + +++F+
Sbjct: 234 MSKPVRILV----KRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ----SVIFV 285
Query: 411 PTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGM 470
T + VD+ ++ + ++ + HG +DQ R ++ F+ + + + TD+ ARG+
Sbjct: 286 NTRRKVDWLTDKMR---SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342
Query: 471 HFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
V V +PT NY+HRIGR+ R G G A F+ R++ + + ++++ NVV++
Sbjct: 343 DVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVE 402
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 136 bits (343), Expect = 9e-32
Identities = 116/412 (28%), Positives = 196/412 (47%), Gaps = 53/412 (12%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
++S L ++ + I ++ TP+Q++ I PI D++ A+TG+GKT AFL PL
Sbjct: 394 KDSSLPPHILEVIDKCGYKEPTPIQRQAI-PIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452
Query: 201 L--------ISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGG 252
+ I Q P A+ I+ PTR+LA QI E K + R++ +IGG
Sbjct: 453 ITTLPKIDRIEESDQGPYAI---ILAPTRELAQQIEEETIKFGKP----LGIRTVAVIGG 505
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQT 310
+ + L + I++ TPGR+ D+L+ +Y + VLDEAD ++ +GF+
Sbjct: 506 ISREDQGFRLR-MGCEIVIATPGRLIDVLEN---RYLVLSRCTYVVLDEADRMIDMGFEP 561
Query: 311 ELSLI-------------------SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIM 351
++ I + L F + ++ +T++F+ATM V+ LA + +
Sbjct: 562 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 621
Query: 352 NKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLP 411
+ ++I + K H+ ++QK V S +E L+ +E Q + I+F+
Sbjct: 622 RRPAVVYIGSAGK----PHERVEQK-VFLMSESEKRKKLLAILE----QGFDPPIIIFVN 672
Query: 412 TVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMH 471
K D +++L + + HG Q++R + K I V TDV RG+
Sbjct: 673 QKKGCDVLAKSLEKM---GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGID 729
Query: 472 FPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V V + ++ +YIHRIGRT RAG+SG A FL +E+ EL++
Sbjct: 730 IQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 136 bits (343), Expect = 9e-32
Identities = 116/412 (28%), Positives = 196/412 (47%), Gaps = 53/412 (12%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
++S L ++ + I ++ TP+Q++ I PI D++ A+TG+GKT AFL PL
Sbjct: 394 KDSSLPPHILEVIDKCGYKEPTPIQRQAI-PIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452
Query: 201 L--------ISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGG 252
+ I Q P A+ I+ PTR+LA QI E K + R++ +IGG
Sbjct: 453 ITTLPKIDRIEESDQGPYAI---ILAPTRELAQQIEEETIKFGKP----LGIRTVAVIGG 505
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQT 310
+ + L + I++ TPGR+ D+L+ +Y + VLDEAD ++ +GF+
Sbjct: 506 ISREDQGFRLR-MGCEIVIATPGRLIDVLEN---RYLVLSRCTYVVLDEADRMIDMGFEP 561
Query: 311 ELSLI-------------------SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIM 351
++ I + L F + ++ +T++F+ATM V+ LA + +
Sbjct: 562 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 621
Query: 352 NKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLP 411
+ ++I + K H+ ++QK V S +E L+ +E Q + I+F+
Sbjct: 622 RRPAVVYIGSAGK----PHERVEQK-VFLMSESEKRKKLLAILE----QGFDPPIIIFVN 672
Query: 412 TVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMH 471
K D +++L + + HG Q++R + K I V TDV RG+
Sbjct: 673 QKKGCDVLAKSLEKM---GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGID 729
Query: 472 FPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V V + ++ +YIHRIGRT RAG+SG A FL +E+ EL++
Sbjct: 730 IQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 136 bits (343), Expect = 9e-32
Identities = 110/375 (29%), Positives = 186/375 (49%), Gaps = 37/375 (9%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS----- 203
V + ++ + TPVQ+ +I P L D+++ A+TG+GKT AFL P+ QH+++
Sbjct: 134 VMENVNRSGYSKPTPVQKHSI-PTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDM 192
Query: 204 ------TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKS-YRSLTLIGGTNLD 256
T + A++++PTR+LAIQI E K S KS ++ L GG
Sbjct: 193 VKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF-----SYKSNIQTAILYGGRENY 247
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ + +I++ TPGR+ DI+++ G + VLDEAD +L +GF+ ++
Sbjct: 248 RDQVNRLRAGTHILIATPGRLIDIIEQ-GFIGLAGCRYLVLDEADRMLDMGFEPQI---- 302
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
RK+ + T +FSAT +Q LA + KD V + S + ++I+Q+
Sbjct: 303 RKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFL--KDNYIFLAVGRVGSTS-ENIEQR 359
Query: 377 LVITKSFAE--SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDII 434
L+ + +++ ++ + SE L ++F+ T + + + L+ + + I
Sbjct: 360 LLWVNEMEKRSNLMEILMNEHSENL------VLVFVETKRGANELAYFLNRQQIRSVSI- 412
Query: 435 KFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG + Q +R + ++ F+ I V T V ARG+ P+V HV +P Y+HRI
Sbjct: 413 --HGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI 470
Query: 495 GRTARAGESGAATIF 509
GRT R G G AT F
Sbjct: 471 GRTGRCGNLGIATSF 485
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 136 bits (343), Expect = 9e-32
Identities = 110/375 (29%), Positives = 186/375 (49%), Gaps = 37/375 (9%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS----- 203
V + ++ + TPVQ+ +I P L D+++ A+TG+GKT AFL P+ QH+++
Sbjct: 131 VMENVNRSGYSKPTPVQKHSI-PTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDM 189
Query: 204 ------TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKS-YRSLTLIGGTNLD 256
T + A++++PTR+LAIQI E K S KS ++ L GG
Sbjct: 190 VKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF-----SYKSNIQTAILYGGRENY 244
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ + +I++ TPGR+ DI+++ G + VLDEAD +L +GF+ ++
Sbjct: 245 RDQVNRLRAGTHILIATPGRLIDIIEQ-GFIGLAGCRYLVLDEADRMLDMGFEPQI---- 299
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
RK+ + T +FSAT +Q LA + KD V + S + ++I+Q+
Sbjct: 300 RKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFL--KDNYIFLAVGRVGSTS-ENIEQR 356
Query: 377 LVITKSFAE--SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDII 434
L+ + +++ ++ + SE L ++F+ T + + + L+ + + I
Sbjct: 357 LLWVNEMEKRSNLMEILMNEHSENL------VLVFVETKRGANELAYFLNRQQIRSVSI- 409
Query: 435 KFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG + Q +R + ++ F+ I V T V ARG+ P+V HV +P Y+HRI
Sbjct: 410 --HGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI 467
Query: 495 GRTARAGESGAATIF 509
GRT R G G AT F
Sbjct: 468 GRTGRCGNLGIATSF 482
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 136 bits (343), Expect = 9e-32
Identities = 107/386 (27%), Positives = 192/386 (49%), Gaps = 29/386 (7%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L ++ + I A FE + +QQR I P DV+ +A++GTGKT F + + Q L +
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGL-DVIQQAQSGTGKTATFCSGVLQQLDIS 106
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
+Q +A+++ PTR+LA QI +K+ + ++ +GGT++ + + L +
Sbjct: 107 LVQ----CQALVLAPTRELAQQI----EKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
+++VGTPGR+ D+L R + + VLDEAD +L GF+ ++ I + L
Sbjct: 159 -GVHVVVGTPGRVFDLLRRQSLRA-DAIKMFVLDEADEMLSRGFKDQIYDIFQLL----- 211
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
++ +FSATM E+ MNK + + K D + I Q V
Sbjct: 212 --PSKVQVGVFSATMPPEALEITRKFMNKPVRILV----KRDELTLEGIKQFYVNVDKEE 265
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
+ L E+ + + +++F+ T + VD+ ++ + ++ + HG +DQ
Sbjct: 266 WKLETLCDLYETLAITQ----SVIFVNTRRKVDWLTDKMR---SRDHTVSATHGDMDQNT 318
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
R ++ F+ + + + TD+ ARG+ V V +PT NY+HRIGR+ R G G
Sbjct: 319 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 378
Query: 505 AATIFLFREELKFVDELRRDTNVVIK 530
A F+ E+ + + +++R NVV++
Sbjct: 379 VAINFMTSEDERMMADIQRFYNVVVE 404
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 135 bits (341), Expect = 2e-31
Identities = 110/386 (28%), Positives = 189/386 (48%), Gaps = 36/386 (9%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
D L+E LL + I FE + +Q+R I P TT DV+A+A++GTGKT F
Sbjct: 33 DMELKEELL-----RGIYGFGFEKPSAIQKRAIVPC-TTGKDVIAQAQSGTGKTATFSVS 86
Query: 197 LFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
+ Q + ++P V+A+++ PTR+LA QI +K+ + L IGGT++
Sbjct: 87 ILQRIDH---EDP-HVQALVMAPTRELAQQI----QKVMSALGEYLNVNILPCIGGTSVR 138
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ L +++VGTPGR+ D+++R A + VLDEAD +L GF+ ++ +
Sbjct: 139 DDQRKLEA-GIHVVVGTPGRVGDMINR-NALDTSRIKMFVLDEADEMLSRGFKDQIYEVF 196
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
R + + ++ +L SATM V ++ M + + K D + I Q
Sbjct: 197 RSM-------PQDVQVVLLSATMPSEVLDVTNRFMRNPIRILV----KKDELTLEGIRQF 245
Query: 377 LVITKSFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESLTKRIDIIK 435
+ + L +L N +A++F T + VD +E ++E+ + +
Sbjct: 246 YINVQKDEWKFDCLC-----DLYNVVNVTQAVIFCNTRRKVDTLTEKMTEN---QFTVSC 297
Query: 436 FHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIG 495
HG +DQ +R ++ F+ + + + TD+ ARG+ V V +P++ NYIHRIG
Sbjct: 298 LHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIG 357
Query: 496 RTARAGESGAATIFLFREELKFVDEL 521
R+ R G G A F+ + + + E+
Sbjct: 358 RSGRFGRKGVAINFVTENDARQLKEI 383
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 134 bits (338), Expect = 4e-31
Identities = 109/370 (29%), Positives = 181/370 (48%), Gaps = 25/370 (6%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAV 212
+ A+ T +Q+ I IL N + AKTG+GKT AF P+ I ++P +
Sbjct: 22 LKALAIYEPTDIQEGVIAQILEGRN-CIGGAKTGSGKTAAFALPI----IEKWSKDPSGI 76
Query: 213 KAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVG 272
A+I+TPTR+LAIQI + L N +LK ++GG ++ + DL + P+++V
Sbjct: 77 FALILTPTRELAIQIDEQFAALG-ANLNLKH---ALIVGGMDMIRQSIDL-SKRPHVVVA 131
Query: 273 TPGRINDILDRVGAKYF---KDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH 329
TPGR+ D++ G + + + F V+DEAD LL F +L L E
Sbjct: 132 TPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL-----PASED 186
Query: 330 IRTLLFSATMDHNVQELAATIM-NKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMV 388
+TLLF+AT+ +++L N K L++ V+ ++ ++ Q + S
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY 246
Query: 389 ALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKL 448
L+ + KK+ AI+F+ + + L + + + H ++ Q++R
Sbjct: 247 -LVHLLTIPENAKKS--AIIFVNRTRTAELIYSILR---LLELRVTELHSEMVQRERINS 300
Query: 449 VDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATI 508
+ RF+ I V TDV +RG+ PSV+ V +P +YIHR+GRTARAG SG +
Sbjct: 301 LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS 360
Query: 509 FLFREELKFV 518
+ ++ V
Sbjct: 361 IVTERDVDLV 370
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 134 bits (338), Expect = 4e-31
Identities = 118/403 (29%), Positives = 197/403 (48%), Gaps = 27/403 (6%)
Query: 132 EQVTIDSL-LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKT 190
+QV S+ EE V I F T +Q + PI + D+V A+TG+GKT
Sbjct: 143 DQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGW-PIAMSGRDLVGVAQTGSGKT 201
Query: 191 LAFLAPLFQHLIST-KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTL 249
LA++ P H+ + +L+ A+++ PTR+LA QI + S R+ +
Sbjct: 202 LAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFG----SNTHVRNTCI 257
Query: 250 IGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQ 309
GG + +DL I++ TPGR+ D L+R G K + VLDEAD +L +GF+
Sbjct: 258 FGGAPKGQQARDLER-GVEIVIATPGRLIDFLER-GTTSLKRCTYLVLDEADRMLDMGFE 315
Query: 310 TELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEA 369
++ I +++ + L++SAT V++LA +N + I ++ + A
Sbjct: 316 PQIRKIMQQIRPDR-------QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLS---A 365
Query: 370 HDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
+ +I Q +V E ++ LI+ + +++ + K I+F+ T K VD + +S +
Sbjct: 366 NHNILQ-IVDVCDENEKLMKLIKLL-TDISAENETKTIIFVETKKRVDEITRNISRQGWR 423
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN 489
I HG Q++R ++ F+ H I V TDV ARG+ V+ V P++ +
Sbjct: 424 ACAI---HGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSED 480
Query: 490 YIHRIGRTARAGESGAA-TIFLFREELKFVD--ELRRDTNVVI 529
Y+HRIGRT R+ +G A T+F K D ++ R+ N I
Sbjct: 481 YVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTI 523
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 133 bits (334), Expect = 1e-30
Identities = 107/386 (27%), Positives = 191/386 (48%), Gaps = 29/386 (7%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L N+ + I A FE + +QQR I P DV+ +A++GTGKT F + + Q L
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGVLQQLDYA 104
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
LQ +A+++ PTR+LA QI +K+ + + + +GGT++ + + L
Sbjct: 105 LLQ----CQALVLAPTRELAQQI----EKVMRALGDYQGVKVHACVGGTSVREDQRILQA 156
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
+++VGTPGR+ D+L R + + VLDEAD +L GF+ ++ I + L
Sbjct: 157 -GVHVVVGTPGRVFDMLRRQSLRP-DCIKMFVLDEADEMLSRGFKDQIYDIFQLL----- 209
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
I+ +FSATM E+ M+K + + K D + I Q V +
Sbjct: 210 --PPKIQVGVFSATMPPEALEITRKFMSKPVRILV----KRDELTLEGIKQFYVNVEKED 263
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
+ L E+ + + +++F+ T + VD+ ++ + ++ + HG +DQ
Sbjct: 264 WKLETLCDLYETLAITQ----SVIFVNTRRKVDWLTDKMR---SRDHTVSATHGDMDQNT 316
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
R ++ F+ + + + TD+ ARG+ V V +PT NY+HRIGR+ R G G
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 505 AATIFLFREELKFVDELRRDTNVVIK 530
A F+ ++ + + ++++ NVV++
Sbjct: 377 VAINFVTLDDQRMLFDIQKFYNVVVE 402
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 132 bits (333), Expect = 1e-30
Identities = 109/408 (26%), Positives = 192/408 (46%), Gaps = 46/408 (11%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE+ V++A+ + + TP+Q++ I PI DV+ A+TG+GKT AFL PL
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAI-PIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 201 LIST-----KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNL 255
+ S + L A+I+ PTR+LA QI E K + L +++++IGG +
Sbjct: 363 ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGK----LLGIKTVSVIGGASR 418
Query: 256 DKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQTELS 313
+ L + +++ TPGR+ D+L+ +Y + +LDEAD +L +GF+ ++
Sbjct: 419 EDQGMKLR-MGVEVVIATPGRLLDVLEN---RYLLLNQCTYVILDEADRMLDMGFEPDVQ 474
Query: 314 LI---------SRKLNEFNTQG---------EEHIRTLLFSATMDHNVQELAATIMNKKD 355
+ + +EF+ + E++ +T++F+ATM ++ LA + +
Sbjct: 475 KVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPA 534
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
+ I + K +++V L++ +ES+ I+F+ K
Sbjct: 535 VVHIGSAGKPTERV-----EQVVYMVPEDRKRKKLVEVLESQFQPP----IIIFVNQKKG 585
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
D S+ L++ K + HG Q +R + K+ I V TDV RG+ V
Sbjct: 586 ADMLSKGLTKLGFKPTVL---HGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDV 642
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V + S+ +Y HRIGRT RAG+ G A FL ++ +L++
Sbjct: 643 SLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 132 bits (333), Expect = 1e-30
Identities = 109/408 (26%), Positives = 192/408 (46%), Gaps = 46/408 (11%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE+ V++A+ + + TP+Q++ I PI DV+ A+TG+GKT AFL PL
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAI-PIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 201 LIST-----KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNL 255
+ S + L A+I+ PTR+LA QI E K + L +++++IGG +
Sbjct: 363 ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGK----LLGIKTVSVIGGASR 418
Query: 256 DKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQTELS 313
+ L + +++ TPGR+ D+L+ +Y + +LDEAD +L +GF+ ++
Sbjct: 419 EDQGMKLR-MGVEVVIATPGRLLDVLEN---RYLLLNQCTYVILDEADRMLDMGFEPDVQ 474
Query: 314 LI---------SRKLNEFNTQG---------EEHIRTLLFSATMDHNVQELAATIMNKKD 355
+ + +EF+ + E++ +T++F+ATM ++ LA + +
Sbjct: 475 KVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPA 534
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
+ I + K +++V L++ +ES+ I+F+ K
Sbjct: 535 VVHIGSAGKPTERV-----EQVVYMVPEDRKRKKLVEVLESQFQPP----IIIFVNQKKG 585
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
D S+ L++ K + HG Q +R + K+ I V TDV RG+ V
Sbjct: 586 ADMLSKGLTKLGFKPTVL---HGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDV 642
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V + S+ +Y HRIGRT RAG+ G A FL ++ +L++
Sbjct: 643 SLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 132 bits (333), Expect = 1e-30
Identities = 110/396 (27%), Positives = 193/396 (47%), Gaps = 38/396 (9%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
D L E LL + I FE + +QQR I P + DV+A+A++GTGKT F
Sbjct: 20 DMNLREELL-----RGIYGYGFEKPSAIQQRAIIPCVRGR-DVIAQAQSGTGKTATFSIA 73
Query: 197 LFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
+ Q I T ++ +A+I+ PTR+LA QI V L + S IGGTN+
Sbjct: 74 ILQQ-IDTSIRE---CQALILAPTRELATQIQRVVMALGE----YMKVHSHACIGGTNVR 125
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTELSL 314
+ + L + +++VGTPGR+ D+++R + +Y K VLDEAD +L GF+ ++
Sbjct: 126 EDARILES-GCHVVVGTPGRVYDMINRKVLRTQYIK---LFVLDEADEMLSRGFKDQIQD 181
Query: 315 ISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSID 374
+ + L ++ +L SATM +V E++ M + + K + + I
Sbjct: 182 VFKML-------PPDVQVILLSATMPPDVLEVSRCFMRDPVSILV----KKEELTLEGIK 230
Query: 375 QKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDII 434
Q V K + L ++ + + +++F T + VD ++ +S +
Sbjct: 231 QFYVNVKQENWKLGTLCDLYDTLSITQ----SVIFCNTRRKVDQLTQEMS---IHNFTVS 283
Query: 435 KFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRI 494
HG ++Q+ R ++ +F+ + + + TD+ ARG+ V V +P++ NYIHRI
Sbjct: 284 AMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRI 343
Query: 495 GRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
GR R G G A F+ ++ + + ++ + + I+
Sbjct: 344 GRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIE 379
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 132 bits (332), Expect = 2e-30
Identities = 106/357 (29%), Positives = 172/357 (47%), Gaps = 23/357 (6%)
Query: 161 LTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL---AVKAVIV 217
L P+Q +T + + + D++A+A+TGTGKT +F PL + L +LQ+ A + +++
Sbjct: 141 LFPIQAKTFHHVYSGK-DLIAQARTGTGKTFSFAIPLIEKLHG-ELQDRKRGRAPQVLVL 198
Query: 218 TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI 277
PTR+LA Q++ + + K GGT + + +I+VGTPGRI
Sbjct: 199 APTRELANQVSKDFSDIT------KKLSVACFYGGTPYGGQFERMRN-GIDILVGTPGRI 251
Query: 278 NDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSA 337
D + G + VLDE D +L +GF ++ I + E++ +TLLFSA
Sbjct: 252 KDHIQN-GKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVA--YKKDSEDNPQTLLFSA 308
Query: 338 TMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESE 397
T H V +A M K +D + K + +++ + K A+I +
Sbjct: 309 TCPHWVFNVAKKYM-KSTYEQVDLIGKKTQKTAITVEHLAI--KCHWTQRAAVIGDV-IR 364
Query: 398 LLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNH 457
+ + I+F T K ++ LS++ + D HG I QK+R + F+ +
Sbjct: 365 VYSGHQGRTIIFCETKKE----AQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSF 420
Query: 458 GIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREE 514
G+ V T+V ARG+ P V+ V Q P + +YIHR GRT RAG +G F +E
Sbjct: 421 GVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKE 477
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 131 bits (330), Expect = 3e-30
Identities = 96/376 (25%), Positives = 189/376 (49%), Gaps = 29/376 (7%)
Query: 148 NVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQ 207
+V + + FE + +QQR + PIL DV+A+A++GTGKT + Q + ++ +
Sbjct: 45 DVLRGVYEYGFEKPSAIQQRAVMPILQGR-DVIAQAQSGTGKTSMIALSVCQVVDTSSRE 103
Query: 208 NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP 267
V+A+I++PTR+LA Q ++ + + +++++ IGG ++ + ++ L
Sbjct: 104 ----VQALILSPTRELATQTEKTIQAIG-LHANIQAH---ACIGGNSVGEDIRKLEH-GV 154
Query: 268 NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGE 327
+++ GTPGR+ D++ R + + + +LDE+D +L GF+ ++ + R L
Sbjct: 155 HVVSGTPGRVCDMIKRRSLRT-RAIKLLILDESDEMLSRGFKDQIYDVYRYL-------P 206
Query: 328 EHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESM 387
++ L SAT+ H + E+ + M + + + K D + I Q V +
Sbjct: 207 PDLQVCLVSATLPHEILEMTSKFMTEPVKILV----KRDELTLEGIKQFFVAVEKEEWKF 262
Query: 388 VALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTK 447
L ++ + + A++F T + VD+ SE + + + HG + QK+R
Sbjct: 263 DTLCDLYDTLTITQ----AVIFCNTKRKVDYLSEKMR---SHNFTVSSMHGDMPQKERDA 315
Query: 448 LVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAAT 507
+++ F+ + + + TDV ARG+ V V +P + YIHRIGR+ R G G A
Sbjct: 316 IMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375
Query: 508 IFLFREELKFVDELRR 523
F+ +++K + ++ +
Sbjct: 376 NFVKSDDIKILRDIEQ 391
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 130 bits (328), Expect = 5e-30
Identities = 115/404 (28%), Positives = 193/404 (47%), Gaps = 28/404 (6%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
E+ ANV I+ F T +Q + P+ + D+V A+TG+GKTL++L P H+
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGW-PVALSGLDMVGVAQTGSGKTLSYLLPAIVHI 156
Query: 202 ISTK-LQNPLAVKAVIVTPTRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSL 259
L+ +++ PTR+LA Q+ + + C +S + GG +
Sbjct: 157 NHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-----LKSTCIYGGAPKGPQI 211
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
+DL I + TPGR+ D L+ G + + VLDEAD +L +GF+ ++ I ++
Sbjct: 212 RDLER-GVEICIATPGRLIDFLE-CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+TL++SAT V++LA + KD + I+ S H+ + ++V
Sbjct: 270 RPDR-------QTLMWSATWPKEVRQLAEDFL--KDYIHINIGALELSANHNIL--QIVD 318
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
E LI+ +E E++ +K K I+F+ T + D + + + I HG
Sbjct: 319 VCHDVEKDEKLIRLME-EIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI---HGD 374
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
Q++R +++ FK I + TDV +RG+ V+ V P S +YIHRIGRTAR
Sbjct: 375 KSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTAR 434
Query: 500 AGESGAATIFLFREELKFVDEL---RRDTNVVIKNQEDYLNQDK 540
+ ++G A F +K V +L R+ N I + L +D+
Sbjct: 435 STKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDR 478
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 130 bits (328), Expect = 5e-30
Identities = 115/389 (29%), Positives = 184/389 (46%), Gaps = 30/389 (7%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EES L A+V + + F T +Q + PI + D+V A+TG+GKTLA++ P H
Sbjct: 240 EESSLPAHVIEEMKRQGFTKPTAIQSQGW-PIALSGRDLVGIAQTGSGKTLAYMLPAIVH 298
Query: 201 LIST----KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQ-CNPSLKSYRSLTLIGGTNL 255
+ + + + P+A+ ++ PTR+LA QI S V+ C P + R + GG++
Sbjct: 299 IGNQPPIIRGEGPIAL---VLAPTRELAQQIQSVVRDYGHLCKPEI---RHTCIFGGSSK 352
Query: 256 DKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLI 315
+DL +I+ TPGR+ D L+ + + VLDEAD +L +GF+ ++
Sbjct: 353 VPQARDLDR-GVEVIIATPGRLIDFLENRNTN-LQRCTYLVLDEADRMLDMGFEPQI--- 407
Query: 316 SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQ 375
RK+ E Q + +++SAT VQ LA +N D + I+ N S H+
Sbjct: 408 -RKIIE---QIRPDRQVVMWSATWPKEVQALAGDFLN--DYIQINIGSMNLSANHNIRQI 461
Query: 376 KLVITK-SFAESMVALIQSIESELLQKKNF-KAILFLPT-VKFVDFFSETLSESLTKRID 432
+ T+ + +V L+ I N K I+F+ T +K D +E +
Sbjct: 462 VEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGY----N 517
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
HG Q +R ++ F+ I + TDV +RG+ +++V P S NY+H
Sbjct: 518 ATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVH 577
Query: 493 RIGRTARAGESGAATIFLFREELKFVDEL 521
RIGRT R + G A F + K EL
Sbjct: 578 RIGRTGRCQQLGTAYTFFTPDNAKQAREL 606
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 130 bits (327), Expect = 7e-30
Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 26/364 (7%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST-KLQNPLA 211
+ ++ T +Q + I P + + DV+ AKTG+GKTLAFL P+F+H++ +L+
Sbjct: 319 LKKFEYSKPTSIQAQAI-PSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDG 377
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIV 271
AVI+ PTR+LA+Q E K + + GG + + + DL I+V
Sbjct: 378 PIAVILAPTRELAMQTYKEANKFAKP----LGLKVACTYGGVGISEQIADLKR-GAEIVV 432
Query: 272 GTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH 329
TPGR+ D+L K + V + VLDEAD + GF+ ++ + +
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDK------ 486
Query: 330 IRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVA 389
+T+LFSAT +++ LA +++K ++ + S I Q VI +
Sbjct: 487 -QTVLFSATFPRHMEALARKVLDKP----VEILVGGKSVVCSDITQNAVICAEHQK---- 537
Query: 390 LIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLV 449
++ +E + + +I+F+ + D + L T + HG IDQ R +
Sbjct: 538 FLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMR--TGYNSVAPLHGGIDQHDRDSSI 595
Query: 450 DRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF 509
FK + V T V ARG+ ++ V P +Y+HR+GRT RAG G A F
Sbjct: 596 ADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTF 655
Query: 510 LFRE 513
+ E
Sbjct: 656 VLPE 659
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 130 bits (327), Expect = 7e-30
Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 26/364 (7%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST-KLQNPLA 211
+ ++ T +Q + I P + + DV+ AKTG+GKTLAFL P+F+H++ +L+
Sbjct: 319 LKKFEYSKPTSIQAQAI-PSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDG 377
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIV 271
AVI+ PTR+LA+Q E K + + GG + + + DL I+V
Sbjct: 378 PIAVILAPTRELAMQTYKEANKFAKP----LGLKVACTYGGVGISEQIADLKR-GAEIVV 432
Query: 272 GTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH 329
TPGR+ D+L K + V + VLDEAD + GF+ ++ + +
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDK------ 486
Query: 330 IRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVA 389
+T+LFSAT +++ LA +++K ++ + S I Q VI +
Sbjct: 487 -QTVLFSATFPRHMEALARKVLDKP----VEILVGGKSVVCSDITQNAVICAEHQK---- 537
Query: 390 LIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLV 449
++ +E + + +I+F+ + D + L T + HG IDQ R +
Sbjct: 538 FLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMR--TGYNSVAPLHGGIDQHDRDSSI 595
Query: 450 DRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF 509
FK + V T V ARG+ ++ V P +Y+HR+GRT RAG G A F
Sbjct: 596 ADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTF 655
Query: 510 LFRE 513
+ E
Sbjct: 656 VLPE 659
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 130 bits (327), Expect = 7e-30
Identities = 115/413 (27%), Positives = 182/413 (43%), Gaps = 67/413 (16%)
Query: 146 DANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK 205
+A++ I FE +P+Q + + P+L + D + ++TG+GKTLAFL P H+ +
Sbjct: 92 NASIMGEIRKNGFEKPSPIQSQ-MWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQL 150
Query: 206 LQ---NPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKS 258
Q N K ++++PTR+LA QI EVKK S Y+S+ L GG + +
Sbjct: 151 AQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY-----SYNGYKSVCLYGGGSRPEQ 205
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRK 318
++ I++ TPGR+ D L G V + VLDEAD +L +GF+ + I +
Sbjct: 206 VEACRG-GVEIVIATPGRLTD-LSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFE 263
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
+ L SAT V++L DK EA +++ L
Sbjct: 264 IRPDRL-------VALTSATWPEGVRKLT---------------DKYTKEAVMAVNGSLD 301
Query: 379 ITKSFAESMVALIQSIESELLQK------------KNFKAILFLPTVKFVDFFSETLSES 426
+T + + +S L+ +N+K I+F+ + D S S+
Sbjct: 302 LTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLS---SDF 358
Query: 427 LTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTS 486
K I+ HG Q R ++ + I V TD+ +RG+ P + HV P
Sbjct: 359 CMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMD 418
Query: 487 LPNYIHRIGRTARAGESGAATIFLF---------------REELKFVDELRRD 524
+ Y+HR+GRT RAG G A FL+ + E + D+LRRD
Sbjct: 419 IEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRD 471
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 130 bits (327), Expect = 7e-30
Identities = 116/408 (28%), Positives = 196/408 (47%), Gaps = 40/408 (9%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS------- 203
KA + +++ + +Q + P DV+ A+TG+GKT AF P+ Q L+
Sbjct: 22 KACERLGWKNPSKIQAEAL-PFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEP 80
Query: 204 TKLQNP-LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
K + P A A +++PTR+LAIQIA + + L + S R L+GG + ++
Sbjct: 81 KKGRRPDPAFFACVLSPTRELAIQIAEQFEALG----ADISLRCAVLVGGID---RMQQT 133
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
L V TPGR+ D + K + + VLDEAD LL F+ L+ I L E
Sbjct: 134 IALGKRPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQI---LEEI 190
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL-VITK 381
+ +T LFSATM V++L + ++ + I+ K + D++ Q+ +
Sbjct: 191 PLER----KTFLFSATMTKKVRKLQRACL--RNPVKIEAASKYSTV--DTLKQQYRFVAA 242
Query: 382 SFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKID 441
+ + + I S + +++F T F + L + I I G++
Sbjct: 243 KYKDCYLVYILS------EMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPI---SGQMT 293
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAG 501
Q KR +++FK I VCTDV +RG+ PSV+ V +PT+ +YIHR+GRTARAG
Sbjct: 294 QSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAG 353
Query: 502 ESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSI 549
SG + + EL++ ++ + ++ K +Y ++ E ++ +
Sbjct: 354 RSGVGISLVNQYELEWYIQIEK---LIGKKLPEYPAEEDEVLSLLERV 398
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 130 bits (327), Expect = 7e-30
Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 68/464 (14%)
Query: 106 QDENSDI--EVFKSKSFNVTTLNPESFHEQVTIDS--LLEESLLDANVHKAISAMKFESL 161
+D NS++ EV K++ + E EQ ++ EE LD+ + +A++ E
Sbjct: 10 EDVNSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKP 69
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS--TKLQNPLAVKAVIVTP 219
T +QQ I P + DVVA+AKTG+GKTLA+L PL Q L S + + LA A I+ P
Sbjct: 70 TLIQQSAI-PYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVP 128
Query: 220 TRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI- 277
+R+L Q+ +EV L + C LK+ + + + +++ +L L P I+V TP I
Sbjct: 129 SRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGL----PEILVSTPACIP 184
Query: 278 ----NDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTL 333
+L+ + + VLDEAD LL G++ L ++ + + L
Sbjct: 185 KCFAAGVLEPTAVS--ESLSILVLDEADLLLSYGYEDNLRSVTSII-------PRRCQCL 235
Query: 334 LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQS 393
L SAT +V++L I++ L + T D + EA S Q+ I+ S + ++ ++
Sbjct: 236 LMSATTSSDVEKLKKLILHNPIVLTL-TEDNDKEEAVPSNVQQFWISCSAQDKLLHILAL 294
Query: 394 IESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFK 453
++ E++QK K ++F+ T+ + F + E + I+ +G++ Q R ++++F
Sbjct: 295 LKLEVVQK---KILIFINTID-MGFRLKLFLEKFGIKSAIL--NGELPQNSRLHILEQFN 348
Query: 454 KTNHGIFVCTDVGA-----------------------------------RGMHFPSVEHV 478
+ TD + RG+ F V V
Sbjct: 349 AGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTV 408
Query: 479 YQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELR 522
+P S+ YIHRIGRT RA SG++ + +E++ ++++
Sbjct: 409 INFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIK 452
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 130 bits (327), Expect = 7e-30
Identities = 110/371 (29%), Positives = 181/371 (48%), Gaps = 35/371 (9%)
Query: 153 ISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL-- 210
++ + F+ TP+Q++ I PIL + + A A TG+GKT AF+ P+ LI K+ N
Sbjct: 156 LAELGFKEPTPIQRQAI-PILLSGRECFACAPTGSGKTFAFICPM---LIKLKVLNCRPS 211
Query: 211 --AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPN 268
++AVI++P R+LA Q A E KKL + + + L+ + K D
Sbjct: 212 TDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLWCD------- 264
Query: 269 IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE 328
+++ TP R+ + K V++ VLDE+D L + ++ + + +
Sbjct: 265 VLISTPMRLKRAIKAKKIDLSK-VEYLVLDESDKLFEQSLLKQIDCVVKACSN------P 317
Query: 329 HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMV 388
I LFSAT+ +V+ELA +IM+ D + + KN A +++ QKLV S ++
Sbjct: 318 SIIRSLFSATLPDSVEELARSIMH--DAVRVIIGRKNT--ASETVKQKLVFAGSEEGKLL 373
Query: 389 ALIQSIESELLQKKNFKAILFLPTVKFV-DFFSETLSESLTKRIDIIKFHGKIDQKKRTK 447
AL QS L N ++F+ + + + + E E++ + H + +R
Sbjct: 374 ALRQSFAESL----NPPVLIFVQSKERAKELYDELKCENIRAGV----IHSDLPPGEREN 425
Query: 448 LVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAAT 507
VD+F+ + + TDV ARGM F + V P S YIHRIGR+ RAG SG A
Sbjct: 426 AVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAI 485
Query: 508 IFLFREELKFV 518
F +++ F+
Sbjct: 486 TFYTEQDVPFL 496
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 129 bits (325), Expect = 1e-29
Identities = 108/382 (28%), Positives = 176/382 (45%), Gaps = 48/382 (12%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKL----QNPLAVK 213
F TP+Q + P+ D++ A+TG+GKTL++L P H+ + + P+ +
Sbjct: 119 FTEPTPIQSQGW-PMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVL- 176
Query: 214 AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGT 273
++ PTR+LA+QI E K S ++ + GG ++DL I++ T
Sbjct: 177 --VLAPTRELAVQIQQEASKFG----SSSKIKTTCIYGGVPKGPQVRDLQK-GVEIVIAT 229
Query: 274 PGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIR-- 331
PGR+ D+++ + V + VLDEAD +L +GF ++ I HIR
Sbjct: 230 PGRLIDMMESNNTN-LRRVTYLVLDEADRMLDMGFDPQIRKIV-----------SHIRPD 277
Query: 332 --TLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVA 389
TL +SAT V++L+ + + I + D + A I + ++ + +V
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVK 336
Query: 390 LIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID---IIKFHGKIDQKKRT 446
L++ I + ++FL T K D + L R+D + HG Q +R
Sbjct: 337 LLEDIMD------GSRILVFLDTKKGCDQITRQL------RMDGWPALSIHGDKSQAERD 384
Query: 447 KLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
++ F+ I TDV ARG+ V++V P SL +Y+HRIGRT RAG G A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 507 TIFLFREELKFVDELRRDTNVV 528
F +F EL TN++
Sbjct: 445 YTFFTVANARFAKEL---TNIL 463
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 129 bits (323), Expect = 2e-29
Identities = 118/412 (28%), Positives = 190/412 (45%), Gaps = 37/412 (8%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE+ + V ++ F T +Q + P+ + D+V A+TG+GKTL+F+ P H
Sbjct: 90 EEAGFSSEVVSSLVEKGFSEPTAIQGQGW-PMALSGRDMVGIAQTGSGKTLSFILPALVH 148
Query: 201 LISTKLQNPL----AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
K Q PL +++ PTR+L +QI V + C + + RS + GG +
Sbjct: 149 ---AKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEF--CG--MFNLRSTAVYGGASSQ 201
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
++ LH +++ TPGR+ D+ D+ G V F VLDEAD +L +GF+ +L I
Sbjct: 202 PQIRALHE-GAEVVIATPGRLIDLHDQ-GHAPLSRVTFLVLDEADRMLDMGFEPQLRKII 259
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
K N + +TL++SAT V+ LA + MN+ +I V N+ +S ++
Sbjct: 260 PKTNA-------NRQTLMWSATWPREVRGLAESYMNE----YIQVVVGNEELKTNSKIKQ 308
Query: 377 LVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKF 436
+V S E LI +++ K K I+F + D L+ S
Sbjct: 309 IVEVCSGREKEDKLIGVLDNF----KGDKVIVFCNMKRTCDDLEYVLNRS---GYGAAAL 361
Query: 437 HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGR 496
HG Q R K++D F+ I + T+V RG+ V+ V P S +Y+HRIGR
Sbjct: 362 HGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGR 421
Query: 497 TARAG--ESGAATIFLFREEL---KFVDELRRDTNVVIKNQEDYLNQDKENF 543
TAR E + T F ++ + + LR V + ED + + +
Sbjct: 422 TARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLEDMVRVSNDRY 473
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 128 bits (321), Expect = 3e-29
Identities = 107/365 (29%), Positives = 174/365 (47%), Gaps = 23/365 (6%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-LQNPLAVKAVI 216
F TP+Q + P+ + D+V A+TG+GKTLA+L P H+ L+ ++
Sbjct: 112 FTEPTPIQCQGF-PLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 170
Query: 217 VTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGR 276
+ PTR+LA Q+ +C+ +S + GG ++DL I + TPGR
Sbjct: 171 LAPTRELAQQVQQVADDYGKCS----RLKSTCIYGGAPKGPQIRDLER-GVEICIATPGR 225
Query: 277 INDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFS 336
+ D L+ G + + VLDEAD +L +GF+ ++ I ++ +TL++S
Sbjct: 226 LIDFLES-GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-------QTLMWS 277
Query: 337 ATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIES 396
AT V++LA + +D I+ + S H+ + V +S E LIQ +E
Sbjct: 278 ATWPKEVRQLAEDFL--RDYTQINVGNLELSANHNILQIVDVCMES--EKDHKLIQLMEE 333
Query: 397 ELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTN 456
+ +K+N K I+F+ T + D + + + I HG Q +R +++ F+
Sbjct: 334 IMAEKEN-KTIIFVETKRRCDDLTRRMRRDGWPAMCI---HGDKSQPERDWVLNEFRSGK 389
Query: 457 HGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
I + TDV +RG+ V+ V P S +Y+HRIGRTAR+ G A F LK
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 449
Query: 517 FVDEL 521
EL
Sbjct: 450 QAREL 454
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 127 bits (318), Expect = 7e-29
Identities = 106/364 (29%), Positives = 181/364 (49%), Gaps = 30/364 (8%)
Query: 116 KSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTT 175
K K+ ++ T+ ES E+V+I ++ L ++ + I A FE + +QQR I IL
Sbjct: 5 KKKNDDMATVEFES-SEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKA 63
Query: 176 ENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQ 235
DV+A+A++GTGKT F + Q L T+++ +A+I++PTR+LA+QI V L
Sbjct: 64 R-DVIAQAQSGTGKTATFSISVLQSL-DTQVRE---TQALILSPTRELAVQIQKVVLALG 118
Query: 236 QCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFK 295
+ + IGGTNL + ++ L +++ GTPGR+ D++ R + + +
Sbjct: 119 D----YMNVQCHACIGGTNLGEDIRKLD-YGQHVVSGTPGRVFDMIRRRNLRT-RAIKLL 172
Query: 296 VLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKD 355
VLDEAD +L GF+ +L I R L + +L SAT+ H + E+ + M
Sbjct: 173 VLDEADEMLNKGFKEQLYDIYRYL-------PPGAQVVLLSATLPHEILEMTSKFMTDPI 225
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
+ + K D + I Q V LI ++ + + A+LF T +
Sbjct: 226 RILV----KRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQ----AVLFCNTRRK 277
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
VD+ ++ + E+ + HG ++QK R +++ F+ + + TDV ARG+ P V
Sbjct: 278 VDWLTDKMKEA---NFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQV 334
Query: 476 EHVY 479
V+
Sbjct: 335 SLVH 338
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 126 bits (317), Expect = 1e-28
Identities = 109/379 (28%), Positives = 183/379 (47%), Gaps = 30/379 (7%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD N+ + + FE + +QQR I PI+ +DV+A+A++GTGKT F Q I T
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQR-IDT 86
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
++ P +A+++ PTR+LA+QI V L + +K + IGGT+ + + L
Sbjct: 87 SVKAP---QALMLAPTRELALQIQKVVMALA-FHMDIKVH---ACIGGTSFVEDAEGLR- 138
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
+ I+VGTPGR+ D + R + K + +LDEAD +L GF+ ++ I L
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDK-IKMFILDEADEMLSSGFKEQIYQIFTLLPPTT- 195
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
+ +L SATM ++V E+ M + + K D + I Q V +
Sbjct: 196 ------QVVLLSATMPNDVLEVTTKFMRNPVRILV----KKDELTLEGIKQFYVNVEEEE 245
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
L +S + + A++F T + V+ E ++ + + + + Q++
Sbjct: 246 YKYECLTDLYDSISVTQ----AVIFCNTRRKVE---ELTTKLRNDKFTVSAIYSDLPQQE 298
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
R ++ F+ + I + TD+ ARG+ V V +P + NYIHRIGR R G G
Sbjct: 299 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 358
Query: 505 AATIFLFREELKFVDELRR 523
A F+ E++ + EL +
Sbjct: 359 VAINFVTNEDVGAMRELEK 377
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 126 bits (317), Expect = 1e-28
Identities = 109/379 (28%), Positives = 183/379 (47%), Gaps = 30/379 (7%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD N+ + + FE + +QQR I PI+ +DV+A+A++GTGKT F Q I T
Sbjct: 29 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQR-IDT 86
Query: 205 KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT 264
++ P +A+++ PTR+LA+QI V L + +K + IGGT+ + + L
Sbjct: 87 SVKAP---QALMLAPTRELALQIQKVVMALA-FHMDIKVH---ACIGGTSFVEDAEGLR- 138
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNT 324
+ I+VGTPGR+ D + R + K + +LDEAD +L GF+ ++ I L
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDK-IKMFILDEADEMLSSGFKEQIYQIFTLLPPTT- 195
Query: 325 QGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA 384
+ +L SATM ++V E+ M + + K D + I Q V +
Sbjct: 196 ------QVVLLSATMPNDVLEVTTKFMRNPVRILV----KKDELTLEGIKQFYVNVEEEE 245
Query: 385 ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK 444
L +S + + A++F T + V+ E ++ + + + + Q++
Sbjct: 246 YKYECLTDLYDSISVTQ----AVIFCNTRRKVE---ELTTKLRNDKFTVSAIYSDLPQQE 298
Query: 445 RTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
R ++ F+ + I + TD+ ARG+ V V +P + NYIHRIGR R G G
Sbjct: 299 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 358
Query: 505 AATIFLFREELKFVDELRR 523
A F+ E++ + EL +
Sbjct: 359 VAINFVTNEDVGAMRELEK 377
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 125 bits (315), Expect = 2e-28
Identities = 110/402 (27%), Positives = 198/402 (48%), Gaps = 43/402 (10%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
+L ++H + MK TP+Q+ + PI+ NDVVA A TG+GKTLAFL P L+
Sbjct: 742 ILPQDLHDNLKRMKMNRPTPIQRASFFPIMHG-NDVVACAHTGSGKTLAFLIPFVIKLME 800
Query: 204 ------TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDK 257
+ + +IV PTR+L Q + ++L LK + GG + +
Sbjct: 801 EFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTY-ETGLKCGLA---FGGYSRNA 856
Query: 258 SLKDLHTLNP-NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIG-FQTELSLI 315
+++ L + + NI+V T GR+ D ++ G + + VLDEAD ++ F E+S I
Sbjct: 857 NVQHLRSFSQLNILVATMGRLQDFVN-AGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKI 915
Query: 316 SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQ 375
+ GE +T+LFSA+ ++Q K+ + VDK + A++ IDQ
Sbjct: 916 ------IGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQ-VDKFGT-ANEKIDQ 967
Query: 376 KLV-ITKSFAESMVALIQSIESELLQK------KNFKAILFLPTVKFVDFFSETLSESLT 428
K++ + ++ + + I+ + + K ++F+ +VKF D + +S +
Sbjct: 968 KILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSA-- 1025
Query: 429 KRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVP--TS 486
+ I H +Q++R + +D F++ + V ++V ARG++ ++HV +P
Sbjct: 1026 -GVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNG 1084
Query: 487 LPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVV 528
Y++RIGRT RAG +G +T F+ ++ DT+++
Sbjct: 1085 FDEYVNRIGRTGRAGFTGTSTAFV---------DVENDTDII 1117
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 125 bits (313), Expect = 3e-28
Identities = 111/404 (27%), Positives = 191/404 (46%), Gaps = 62/404 (15%)
Query: 137 DSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAP 196
DS + SLL+ +S +P+Q ++I P +T +V+A A TG+GKTLAF P
Sbjct: 130 DSSMSPSLLNR-----LSENSIRQPSPIQMQSI-PFMTERRNVLASAPTGSGKTLAFALP 183
Query: 197 LFQHLISTKLQ------NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLI 250
+ ++ K + N + AV++ PTR+LA Q +E K Y + T I
Sbjct: 184 VIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLK----------YCANTSI 233
Query: 251 GGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIG--- 307
N D+ + +I+V TP RI LD++ + + V+DE+D L ++
Sbjct: 234 SAANFSGEETDIQ--HADILVSTPNRIVFHLDKIDTSSLR---WLVVDESDRLFEVVEGQ 288
Query: 308 ---FQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDK 364
F+ +L+ I + + T R FSAT H V++ +++ + + ++
Sbjct: 289 DKCFRNQLAAIYKACDAKCT------RVAFFSATFSHEVEKWCKENIDEIGMVCVG--ER 340
Query: 365 NDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLS 424
N S S+ QKL + +A+ L + +FK P + FV S+ +
Sbjct: 341 NSSNT--SVKQKLTYCGTEDGKKIAIRN------LLRTSFKP----PALVFVQ--SKDRA 386
Query: 425 ESLTKRIDIIKFHGKIDQ-------KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEH 477
L K + I + K+D K+R + ++RF++ + VCT++ RG+ V
Sbjct: 387 VQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGL 446
Query: 478 VYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
V +PTS+ +YIHR+GRT RAG+SG A + ++K++ +
Sbjct: 447 VINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSI 490
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 124 bits (312), Expect = 4e-28
Identities = 107/374 (28%), Positives = 178/374 (46%), Gaps = 31/374 (8%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ L ++ K I FE +P+Q+ +I PI T +D++A+AK GTGKT AF P+ +
Sbjct: 127 EDYFLKRDLLKGIYEKGFEKPSPIQEESI-PIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
+ N ++A+I+ PTR+LA+Q + K+L + + + + GGT+L +
Sbjct: 186 ID----PNNNVIQAMILVPTRELALQTSQVCKELSK----YLNIQVMVTTGGTSLRDDIM 237
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
LH +++VGTPGRI D L + G KD V+DEAD LL FQ L +L
Sbjct: 238 RLHQ-PVHLLVGTPGRILD-LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL----EELI 291
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
+F Q + L+FSAT V+ + K ++ D + Q
Sbjct: 292 QFLPQNRQF---LMFSATFPVTVKAFKDRHLRKP-----YVINLMDQLTLMGVTQYYAFV 343
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
+ V + ++ S+L + ++I+F +V V+ ++ ++E H K+
Sbjct: 344 EE--RQKVHCLNTLFSKL---QINQSIIFCNSVNRVELLAKKITE---LGYSCFYIHAKM 395
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
Q R ++ F+ VCTD+ RG+ +V V P + +Y+HR+GR+ R
Sbjct: 396 VQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 455
Query: 501 GESGAATIFLFREE 514
G G A + E+
Sbjct: 456 GHLGLAVNLVTYED 469
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 124 bits (310), Expect = 6e-28
Identities = 95/335 (28%), Positives = 161/335 (47%), Gaps = 32/335 (9%)
Query: 177 NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQ 236
+D++ +AK+GTGKTL F ++L S ++ VIVTPTR++++QI V+K+
Sbjct: 50 SDMLVQAKSGTGKTLVFSVLAVENLDSRSSH----IQKVIVTPTREISVQIKETVRKVAP 105
Query: 237 CNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKV 296
Y +GG+ +L DL P I++GTPGRI ++ ++GA VDF V
Sbjct: 106 TGARTSVY-----VGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLV-KLGAMNMSHVDFFV 159
Query: 297 LDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDC 356
LDEAD L+ F+ ++++I L + + +FSAT N+ L +T + +D
Sbjct: 160 LDEADKLMDEVFRDDINIIINSLPQIR-------QVAVFSATYPRNLDNLLSTFL--RDA 210
Query: 357 LFIDTVDKNDSEAHDSIDQKLVITKSFAESMVA-LIQSIESELLQKKNFKAILFLPTVKF 415
+ ++ D +L K + + + +++ + L + +A++F +
Sbjct: 211 ALV---------RFNADDVQLFGIKQYVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISK 261
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
+ + L S +D+ + QK R VD+ + I V +D+ ARG+ +V
Sbjct: 262 CEPIATHLKSS---GLDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNV 318
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
V + + Y HRIGR AR G GAA L
Sbjct: 319 NLVVNIDAAANEETYFHRIGRAARFGAHGAAVTLL 353
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 124 bits (310), Expect = 6e-28
Identities = 111/393 (28%), Positives = 186/393 (47%), Gaps = 32/393 (8%)
Query: 149 VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK-LQ 207
V K I +++ T +Q + PI + ++ V AKTG+GKTL ++ P H+ + + LQ
Sbjct: 150 VMKEIRRQGYKAPTAIQAQGW-PIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ 208
Query: 208 NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP 267
A+++ PTR+LA QI + S R+ + GG ++DL
Sbjct: 209 RGDGPIALVLAPTRELAQQIQQVATEFG----SSSYVRNTCVFGGAPKGGQMRDLQR-GC 263
Query: 268 NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGE 327
I++ TPGR+ D L G+ K + VLDEAD +L +GF+ ++ I ++
Sbjct: 264 EIVIATPGRLIDFLS-AGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR---- 318
Query: 328 EHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFA--E 385
+TL++SAT V++LA + + I +++ + A+ +I Q + + F+ E
Sbjct: 319 ---QTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELS---ANHNIRQVVDVCDEFSKEE 372
Query: 386 SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKR 445
+ L+ I + K I+F+ T + VD + S R I HG Q +R
Sbjct: 373 KLKTLLSDIYDT--SESPGKIIIFVETKRRVDNLVRFI-RSFGVRCGAI--HGDKSQSER 427
Query: 446 TKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGA 505
++ F+ I V TDV ARG+ +++V P + +YIHRIGRT R+ G
Sbjct: 428 DFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGT 487
Query: 506 ATIFLFREELK----FVDELR---RDTNVVIKN 531
+ F + K VD LR ++ N ++N
Sbjct: 488 SFAFFTKNNAKQAKALVDVLREANQEINPALEN 520
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 123 bits (309), Expect = 8e-28
Identities = 113/406 (27%), Positives = 193/406 (46%), Gaps = 43/406 (10%)
Query: 128 ESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGT 187
+ ++ I+S L +++LDA F+ TP+Q + I P++ +++A A TG+
Sbjct: 56 QQLDQEYKINSRLLQNILDAG---------FQMPTPIQMQAI-PVMLHGRELLASAPTGS 105
Query: 188 GKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSL 247
GKTLAF P+ L K +A+I++PTR+LA QI E+ K+ + +R
Sbjct: 106 GKTLAFSIPILMQL---KQPANKGFRALIISPTRELASQIHRELIKISEGT----GFRIH 158
Query: 248 TLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDIL--DRVGAKYFKDVDFKVLDEADTLLQ 305
+ K + +I+V TP R+ +L D G V++ V+DE+D L +
Sbjct: 159 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID-LASVEWLVVDESDKLFE 217
Query: 306 ---IGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTV 362
GF+ +L+ I F +R +FSAT ++V++ +N + + +
Sbjct: 218 DGKTGFRDQLASI------FLACTSHKVRRAMFSATFAYDVEQWCK--LNLDNVISVSIG 269
Query: 363 DKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSET 422
+N A ++++Q+L+ S ++A+ + L KK F + L V+ ++ E
Sbjct: 270 ARNS--AVETVEQELLFVGSETGKLLAMRE------LVKKGFNPPV-LVFVQSIERAKEL 320
Query: 423 LSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLC 482
E + + I++ H + Q++R V F+ + +CT + ARG+ F V V
Sbjct: 321 FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYD 380
Query: 483 VPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVV 528
PTS YIHRIGRT RAG G A F ++ LR NV+
Sbjct: 381 FPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPL---LRSVANVI 423
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 122 bits (307), Expect = 1e-27
Identities = 127/509 (24%), Positives = 218/509 (41%), Gaps = 89/509 (17%)
Query: 123 TTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAK 182
+T++ SFH ++ L LL +A + ++ TP+Q ++ I D+ A
Sbjct: 157 STVDGVSFHADTFMELNLSRPLL-----RACETLGYKKPTPIQ---VQFIPQEWRDLCAS 208
Query: 183 AKTGTGK--------------------TLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRD 222
A TG+GK T AF P + L+ + + A + +I+TPTR+
Sbjct: 209 AITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTLERLLF-RPKRVFATRVLILTPTRE 267
Query: 223 LAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILD 282
LA+QI S ++ L Q + ++GG ++ + L ++ P+I+V TPGR+ D L
Sbjct: 268 LAVQIHSMIQNLAQ----FTDIKCGLIVGGLSVREQEVVLRSM-PDIVVATPGRMIDHLR 322
Query: 283 RVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHN 342
+ D+ +LDEAD LLQ GF TE++ + R + +T+LFSATM
Sbjct: 323 NSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLC-------PKRRQTMLFSATMTEE 375
Query: 343 VQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKK 402
V+EL +NK L A S + +T+ + + S S Q
Sbjct: 376 VKELVKLSLNKPLRL----------SADPSARRPPGLTEEYLREF--FVPSCASGTKQAA 423
Query: 403 NFKAILF-LPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKL----------VDR 451
+ ILF L +K + HG + Q +R + ++
Sbjct: 424 HRLKILFGLAGLKAAE------------------LHGNLTQAQRLDVRNLGTSALFSLEL 465
Query: 452 FKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLF 511
F+K + TDV ARG+ V+ V P + +Y+HR+GRTARAG G A F+
Sbjct: 466 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 525
Query: 512 REELKFVDELRRDTNVVIKNQEDYLNQ-------DKENFDMISSIITNNPDFPEALKSII 564
+ + + ++ + + + + +++ S II D A+ S
Sbjct: 526 DSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAE 585
Query: 565 GFYKGVQNEYRLNYKVAQNVLRSFSELHS 593
F+ Y + ++A+N+L E+++
Sbjct: 586 RFHSHSSKNYGIPGELAENMLEHRDEIYA 614
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 122 bits (306), Expect = 2e-27
Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 62/383 (16%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L + + + + +E P+Q + + PI+ + D + AKTG+GKTL F+ P+ +H+
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQAL-PIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI--- 458
Query: 205 KLQNPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
K Q P+ +++ PTR+L QI S+++K + + + + GG+ + + +
Sbjct: 459 KDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII----CVPVYGGSGVAQQIS 514
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKY--FKDVDFKVLDEADTLLQIGFQTELSLISRK 318
+L I+V TPGR+ DIL K + V + V+DEAD + +GF+ +++ I +
Sbjct: 515 ELKR-GTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 573
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
+ +T+LFSAT V+ LA ++NK ++ S + I Q LV
Sbjct: 574 IRPDR-------QTVLFSATFPRQVETLARKVLNKP----VEIQVGGRSVVNKDITQ-LV 621
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHG 438
+ +E L++ + E +K K ++F+
Sbjct: 622 EIRPESERFSRLLELL-GEWYEKG--KVLVFV---------------------------- 650
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTA 498
+ + K + FK + + T V ARG+ +E V P +Y+HR+GRT
Sbjct: 651 ----RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 706
Query: 499 RAGESGAATIFLFREELKFVDEL 521
RAG G A F+ ++ K+ +L
Sbjct: 707 RAGRKGCAVTFISEDDAKYAPDL 729
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 122 bits (306), Expect = 2e-27
Identities = 109/391 (27%), Positives = 186/391 (46%), Gaps = 48/391 (12%)
Query: 142 ESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL 201
ES + I + ++ TP+Q++ I PI D++ A+TG+GKTLAFL PL +
Sbjct: 398 ESGFPKEIIDIIDKVGYKEPTPIQRQAI-PIGLQNRDIIGVAETGSGKTLAFLIPLLSWI 456
Query: 202 IST-KLQNPLAVK----AVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
S K++ V A+I+ PTR+LA QI E K Q R++ ++GG + +
Sbjct: 457 QSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQP----LGIRTVVVVGGLSRE 512
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEADTLLQIGFQTELSL 314
+ L L I++ TPGR+ D+L+ +Y + VLDEAD ++ +GF+ ++
Sbjct: 513 EQGFRLR-LGCEIVIATPGRLIDVLEN---RYLVLNQCTYIVLDEADRMIDMGFEPDVQK 568
Query: 315 I-------------------SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKD 355
I ++ + F T+ +++ +T++F+ATM V+ LA T + +
Sbjct: 569 ILEYMPVTNLKPDTEEAEDETKLMENFYTK-KKYRQTVMFTATMPPAVERLARTYLRRPA 627
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
++I +V K +E + I + + M L + I+ + I+F+ K
Sbjct: 628 TVYIGSVGK-PTERTEQIVYMMGENDKRKKLMEILSRKIDPPV--------IIFVNQKKG 678
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
D ++ L + + HG Q++R + K I V TDV RG+ V
Sbjct: 679 ADVLAKGLEKL---GYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDV 735
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
V + ++ +Y HRIGRT RAG++G A
Sbjct: 736 SLVINYDMAKTIEDYTHRIGRTGRAGKTGCA 766
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 121 bits (303), Expect = 4e-27
Identities = 101/374 (27%), Positives = 178/374 (47%), Gaps = 31/374 (8%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL-ISTKLQNPLAVKAVI 216
++ + +QQR + PIL DV+A+A++GTGKT + Q + IS++ V+ ++
Sbjct: 42 YKKPSEIQQRALVPILKGR-DVIAQAQSGTGKTSMIAISVCQIVNISSR-----KVQVLV 95
Query: 217 VTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGR 276
++P+R+LA S+ +K Q + + ++ IGG ++ + +K L + + GTPGR
Sbjct: 96 LSPSRELA----SQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLER-GVHAVSGTPGR 150
Query: 277 INDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFS 336
+ D++ R G+ K V VLDE+D +L G + ++ + R L I+ L S
Sbjct: 151 VYDMIKR-GSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL-------PHDIQVCLIS 202
Query: 337 ATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIES 396
AT+ + E+ M + + K D + I Q V L
Sbjct: 203 ATLPQEILEMTEKFMTDPVRILV----KPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGR 258
Query: 397 ELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTN 456
+ + AI+F T + VD+ +E + S + HG QK+R ++++F+
Sbjct: 259 LTINQ----AIIFCNTRQKVDWLTEKMRSS---NFIVSSMHGDKRQKERDDIMNQFRSFK 311
Query: 457 HGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
+ + +DV ARG+ +V HV +P + YIHRIGR R G G A F+ ++K
Sbjct: 312 SRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMK 371
Query: 517 FVDELRRDTNVVIK 530
+ ++ R I+
Sbjct: 372 DLKDIERHYGTKIR 385
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 120 bits (300), Expect = 9e-27
Identities = 107/405 (26%), Positives = 193/405 (47%), Gaps = 39/405 (9%)
Query: 107 DENSDIEVFKSKSFNVTTLNPESFHEQV--TIDSLLEESLLDANVHKAISAMKFESLTPV 164
+ N+D++ + N+ + + V T + E+ L + I FE +P+
Sbjct: 13 NSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPI 72
Query: 165 QQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLA 224
Q+ I P+ T D++A+AK GTGKT AF+ P + + KL ++A+I+ PTR+LA
Sbjct: 73 QEEAI-PVAITGRDILARAKNGTGKTAAFVIPTLEK-VKPKLNK---IQALIMVPTRELA 127
Query: 225 IQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDR 283
+Q + V+ L + C S + GGTNL + L+ +I+VGTPGR+ D+ R
Sbjct: 128 LQTSQVVRTLGKHCGIS-----CMVTTGGTNLRDDILRLNE-TVHILVGTPGRVLDLASR 181
Query: 284 VGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNV 343
A D ++DEAD +L F+T + I L + ++LLFSAT V
Sbjct: 182 KVAD-LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH-------QSLLFSATFPLTV 233
Query: 344 QELAATIMNK--KDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQK 401
+E ++K + L + K ++ + ++++ + + ++ S+L
Sbjct: 234 KEFMVKHLHKPYEINLMEELTLKGITQYYAFVEER---------QKLHCLNTLFSKL--- 281
Query: 402 KNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFV 461
+ +AI+F + V+ ++ +++ H ++ Q++R K+ F++ V
Sbjct: 282 QINQAIIFCNSTNRVELLAKKITD---LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338
Query: 462 CTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
C+D+ RG+ +V V P + Y+HRIGR+ R G G A
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 383
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 119 bits (298), Expect = 2e-26
Identities = 105/378 (27%), Positives = 179/378 (46%), Gaps = 39/378 (10%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ L ++ + I FE +P+Q+ +I PI T +D++A+AK GTGKT AF P +
Sbjct: 157 EDYFLKRDLLRGIYEKGFEKPSPIQEESI-PIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
+ ++AVI+ PTR+LA+Q + K+L + + GGT+L +
Sbjct: 216 IDPEN----NVIQAVILVPTRELALQTSQVCKELSK----YLKIEVMVTTGGTSLRDDIM 267
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
L+ +++VGTPGRI D L + G KD V+DEAD LL + FQ + + + L
Sbjct: 268 RLYQ-PVHLLVGTPGRILD-LAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP 325
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
E + L+FSAT V+ + K I+ +D+ + +T
Sbjct: 326 ESR-------QILMFSATFPVTVKSFKDRYLKKP--YIINLMDQL---------TLMGVT 367
Query: 381 KSFA----ESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKF 436
+ +A V + ++ S+L + ++I+F +V V+ ++ ++E
Sbjct: 368 QYYAFVEERQKVHCLNTLFSKL---QINQSIIFCNSVNRVELLAKKITE---LGYSCFYI 421
Query: 437 HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGR 496
H K+ Q R ++ F+ VCTD+ RG+ +V V P + +Y+HR+GR
Sbjct: 422 HAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 481
Query: 497 TARAGESGAATIFLFREE 514
+ R G G A + E+
Sbjct: 482 SGRFGHLGLAVNLVTYED 499
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 117 bits (293), Expect = 6e-26
Identities = 101/340 (29%), Positives = 175/340 (50%), Gaps = 34/340 (10%)
Query: 158 FESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIV 217
+E TP+Q + I P+ D++A A TG+GKT AFL P+ I L A+I+
Sbjct: 223 YEVPTPIQMQMI-PVGLLGRDILASADTGSGKTAAFLLPV----IMRALFESKTPSALIL 277
Query: 218 TPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRI 277
TPTR+LAIQI + K+L P +K ++ L+GG L L L + +I+ TPGR+
Sbjct: 278 TPTRELAIQIERQAKELMSGLPRMK---TVLLVGGLPLPPQLYRLQQ-HVKVIIATPGRL 333
Query: 278 NDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSA 337
DI+ + + V V+DEADT+L++GFQ ++ I + +T+L SA
Sbjct: 334 LDIIKQSSVE-LCGVKIVVVDEADTMLKMGFQQQVLDILENI-------PNDCQTILVSA 385
Query: 338 TMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESE 397
T+ ++++LA+ +++ + I T +KN A ++ Q ++ + A+ + +
Sbjct: 386 TIPTSIEQLASQLLHNP--VRIITGEKNLPCA--NVRQIILWVEDPAK---------KKK 432
Query: 398 LLQKKNFKAILFLPTVKFVD--FFSETLSESLTK--RIDIIKFHGKIDQKKRTKLVDRFK 453
L + N K + P + FVD ++ LSE++ K + I H + Q +R ++
Sbjct: 433 LFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLL 492
Query: 454 KTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHR 493
+ ++ + V T V RG+ SV V +P+S+ Y+H+
Sbjct: 493 EGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 117 bits (292), Expect = 8e-26
Identities = 102/320 (31%), Positives = 155/320 (47%), Gaps = 29/320 (9%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI-- 202
L V A+ + F +TPVQ TI P+ DV A+A TG+GKTLAF+ P+ + L+
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATI-PLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 203 STKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
KL+ V A+I+TPTR+LAIQI EV L + + IGG N + ++
Sbjct: 75 EEKLKKS-QVGAIIITPTRELAIQI-DEV--LSHFTKHFPEFSQILWIGGRNPGEDVERF 130
Query: 263 HTLNPNIIVGTPGRINDILDRVG-----AKYFKDVDFKVLDEADTLLQIGFQTELSLISR 317
NIIV TPGR+ D+ R A + +D VLDEAD LL +GF+ ++ I
Sbjct: 131 KQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILE 190
Query: 318 KLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDS---ID 374
L + RT LFSAT V+ L + + + S A + ++
Sbjct: 191 FL-------PKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLE 243
Query: 375 QKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDII 434
++ K+ E L+ + + K K ++F T V+++ + L E L K + I+
Sbjct: 244 NYYMVCKA-DEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKAL-EVLVKGVKIM 297
Query: 435 KFHGKIDQKKRTKLVDRFKK 454
HGK+ + KR K+ F+K
Sbjct: 298 CIHGKM-KYKRNKIFMEFRK 316
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 114 bits (286), Expect = 4e-25
Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 65/357 (18%)
Query: 154 SAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHL--ISTKLQNPLA 211
+ +K S+T VQ+++I P+L D + +++TG+GKTLA+ P+ Q L + +K+Q
Sbjct: 247 TVLKMSSMTSVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDG 305
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSL---TLIGGTNLDKSLKDLHTLNPN 268
A+++ PTR+LA+Q V+KL LK + + L+GG KS K N
Sbjct: 306 PYALVLVPTRELALQSFDTVQKL------LKPFTWIVPGVLMGGEK-RKSEKARLRKGIN 358
Query: 269 IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEE 328
I++ TPGR+ D + +F + + V DEAD +L +GF+ ++++I LN N + ++
Sbjct: 359 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI---LNAVNAECQK 415
Query: 329 HIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK------- 381
+ +L SAT+ V LA ++ D + I +DK +HD ++ K +
Sbjct: 416 R-QNVLLSATLTEGVTRLADISLH--DPVSISVLDK----SHDQLNPKDKAVQEVCPPPA 468
Query: 382 -----SFA--ESMVALIQSIESEL---------LQKKNF----KAILFLPTVKFVDF--- 418
SFA ES+ + + S+L LQK F K ++F + + V+F
Sbjct: 469 GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYS 528
Query: 419 -FSETLSE-----------SLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCT 463
F +TL S + R+ ++ HG ++Q++RT + F + G+ +CT
Sbjct: 529 LFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 114 bits (285), Expect = 5e-25
Identities = 101/382 (26%), Positives = 160/382 (41%), Gaps = 73/382 (19%)
Query: 143 SLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLI 202
+L++ N KAI M F ++T +Q +TI+ +L D++A AKTG+ + +
Sbjct: 374 NLVNENTLKAIKEMSFMNMTEIQHKTIRSLLEGR-DLLAAAKTGS----------VELTV 422
Query: 203 STKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
K I++PTR+LA+QI L ++GG N + L
Sbjct: 423 KLKFMPTNRPGVFILSPTRELAMQIFGGANTHHMHTYGL-------IMGGDNTSAEAQKL 475
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
NIIV TPG + D + +K++ + V+DEAD +L +GF+ EL I + L
Sbjct: 476 AN-GINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTC 534
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
T+L SAT V++LA
Sbjct: 535 R-------HTMLLSATQTRKVEDLARI--------------------------------- 554
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
S++ ++ + K ++F + V + E L+ + I+ HGK Q
Sbjct: 555 ----------SLKKGAIKNRKRKIMVFFSSSMSVKYHYELLN---YMDLPILAIHGKQKQ 601
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA-G 501
K T +F K + GI +C DV ARG+ P V+ + Q YIHR+ RTAR
Sbjct: 602 NKGTTTFFQFCKADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEYIHRVSRTARGLN 661
Query: 502 ESGAATIFLFREELKFVDELRR 523
G + L EE+ F+ L++
Sbjct: 662 GRGHVLLILCPEEMGFLHYLKQ 683
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 114 bits (285), Expect = 5e-25
Identities = 109/376 (28%), Positives = 173/376 (45%), Gaps = 40/376 (10%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
+E L V A+ + E T +Q I P + VV + TG+GKTLA+L P+ Q
Sbjct: 115 QELGLSEEVMGALQELNIEVPTEIQCIGI-PAVMERKSVVLGSHTGSGKTLAYLLPIVQV 173
Query: 201 LIST---------KLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIG 251
L K P + V++ PTR+L+ Q+ L Q + +RS+ + G
Sbjct: 174 LSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVC-----LHQDYHHAR-FRSILVSG 227
Query: 252 GTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTE 311
G+ + L+ +++VGTPGRI ++ G + D+ + VLDEADT+ GF E
Sbjct: 228 GSRIRPQEDSLNNAI-DMVVGTPGRILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPE 285
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEA-H 370
+ LN+ HI+ + + VQ+L + L T+ K + A H
Sbjct: 286 IRKFLAPLNQ-------HIKVVNEIVSFQA-VQKLVDEEFQGIEHLRTSTLHKKIANARH 337
Query: 371 DSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKR 430
D I + + AL+Q +E L K K ++F T+ LSE+ +
Sbjct: 338 DFIK-----LSGGEDKLEALLQVLEPSLA--KGSKVMVFCNTLNSSRAVDHYLSEN---Q 387
Query: 431 IDIIKFHGKIDQKKRTKLVDRFKKTNHGI--FVCTDVGARGMHFPSVEHVYQLCVPTSLP 488
I + +HG++ ++R + + +FK VCTD+ ARG+ V+HV P +
Sbjct: 388 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSI 446
Query: 489 NYIHRIGRTARAGESG 504
+Y+HR GRTAR G G
Sbjct: 447 DYLHRTGRTARMGAKG 462
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 113 bits (282), Expect = 1e-24
Identities = 97/371 (26%), Positives = 179/371 (48%), Gaps = 31/371 (8%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
K I + ++ +PVQ +I +L +N ++ ++K GTGKT +++ P+ + S++L
Sbjct: 121 KRIRDIGYDFPSPVQVASIPHVLGGKN-LLVRSKNGTGKTASYIVPMLNMINSSEL---- 175
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNII 270
+++ +I+ P R+LA+QI+ VK++ + + S ++GGT++ + + +++
Sbjct: 176 SIQGIILVPIRELALQISRNVKRMSEGTGVI----SAPVVGGTSMQDDIIRVSN-GVHVM 230
Query: 271 VGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHI 330
VGTPGRI D++++ K V V DEAD LL + F ++ + L
Sbjct: 231 VGTPGRIVDLVEKRVGTLSKRV-ILVFDEADKLLDVTFGETVTKLLDLL-------PREK 282
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+ LL+SAT + V M C ++ A + Q K +E ++ L
Sbjct: 283 QMLLYSATFPYFVTGFIRRYMKNPLC-----INLMKELAPVGVKQFYTYVKP-SEKLLCL 336
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
+S LL+ + ++F ++K V+ + ++E I H K+ Q+ R +
Sbjct: 337 ----KSLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSYFI---HSKMAQEDRNIVFH 389
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
F K I V TD+ RG+ P+ +V + S +Y+HRIGR R G G A +
Sbjct: 390 NFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLV 449
Query: 511 FREELKFVDEL 521
EE + + ++
Sbjct: 450 TTEEKEMLMDI 460
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 113 bits (282), Expect = 1e-24
Identities = 109/411 (26%), Positives = 184/411 (44%), Gaps = 66/411 (16%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTK----- 205
K+I + F+ T +Q+ DV+ A+TG+GKTLAF P+ Q L+ +
Sbjct: 204 KSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGK 263
Query: 206 ---LQNPLA--------VKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
L+ A ++A+I+TPTR+LA+Q+ ++ + N S+K + ++GG
Sbjct: 264 LYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAK-NLSVK---VVPIVGGMF 319
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKD---VDFKVLDEADTLLQIGFQTE 311
+K + L P I+V TPGR+ +++ G K+ + + F VLDEAD +++ G E
Sbjct: 320 SEKQERRLKE-KPEIVVATPGRLWELMS-AGEKHLVELHSLSFFVLDEADRMVERGHFRE 377
Query: 312 LSLI------SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKN 365
L I + K NE TQ + T+L +ATI D F + +
Sbjct: 378 LQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSD--FRKKLKRG 435
Query: 366 DSEAHDSIDQKLVITKSFAE-----SMVALIQSIESELLQKK------------------ 402
S++ S ++ + +E VA+I + +L K
Sbjct: 436 SSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLY 495
Query: 403 -------NFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKT 455
+ I+F +V + S L +D+ ++ Q+ R K +DRF+ +
Sbjct: 496 YILSVHGQGRTIVFCTSVTDLRHISGLLK---ILGLDVCTLFSEMKQRARLKSIDRFRAS 552
Query: 456 NHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
+GI + TD+ ARG+ +V + +P S Y+HR GRTARA G +
Sbjct: 553 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCS 603
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 112 bits (280), Expect = 2e-24
Identities = 109/405 (26%), Positives = 186/405 (45%), Gaps = 50/405 (12%)
Query: 153 ISAMKFESLTPVQQRTI----KPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQN 208
I ++ +S+ PV T+ + D++ A TG+GKTLA+ P+ Q L ++
Sbjct: 200 IQSIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQINR 259
Query: 209 PLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH----T 264
++ +I+ PT+ L Q+ + + KL Q + S L+ SLKD H
Sbjct: 260 ---LRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSI--------AKLENSLKDEHKKLSN 308
Query: 265 LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTEL-SLISR-KLNEF 322
L P+I++ TPGR+ D L+ K++ F ++DEAD LL FQ L+S K ++
Sbjct: 309 LEPDILITTPGRLVDHLNMKSIN-LKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKL 367
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDK--------NDSEAH---- 370
+T I+ ++FSAT+ N ++L + K LF+ DK N+ +
Sbjct: 368 DTLPGNVIK-MIFSATLTTNTEKLNGLNLYKPK-LFLKQTDKLYQLPNKLNEFNINIPTA 425
Query: 371 DSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKR 430
S+ + L++ S + M + + + K N +I K + E+ S+S +
Sbjct: 426 KSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLS---KLLQLICESRSQSSVLK 482
Query: 431 ------IDIIKFHGKIDQKKRTKLVDRFKKTNHG----IFVCTDVGARGMHFPSVEHVYQ 480
+ I + + + K+V F + I + TD+ +RG+ + V
Sbjct: 483 NLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVIN 542
Query: 481 LCVPTSLPNYIHRIGRTARAGESGAA-TIFLFREELKFVDELRRD 524
P S Y+HR+GRTARA E G+A + + R E F D+L +D
Sbjct: 543 YDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKD 587
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 112 bits (280), Expect = 2e-24
Identities = 98/402 (24%), Positives = 176/402 (43%), Gaps = 54/402 (13%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD + +A++ + + T +Q++ I P+ D++A+A+TG+GKT A+ P+ Q L+
Sbjct: 14 LDPRLLQAVTDLGWSRPTLIQEKAI-PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 72
Query: 205 KLQNPL---AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKD 261
K P+ AV+ +++ PT++LA Q S +++L + R + + + + S+
Sbjct: 73 KATGPVVEQAVRGLVLVPTKELARQAQSMIQQL-----ATYCARDVRVANVSAAEDSVSQ 127
Query: 262 LHTL--NPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
L P+++VGTP RI L + K ++ V+DEAD L GF+ EL + L
Sbjct: 128 RAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHL 187
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+ L SAT + +VQ L I++ L + ++ D + Q V+
Sbjct: 188 PRI-------YQAFLMSATFNEDVQALKELILHNPVTL---KLQESQLPGPDQLQQFQVV 237
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
++ + + L ++ L++ K+ + L + F E S I +G+
Sbjct: 238 CETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS------IPTCVLNGE 291
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVG---------------------------ARGMHF 472
+ + R ++ +F + + + TD ARG+ F
Sbjct: 292 LPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDF 351
Query: 473 PSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREE 514
V V +P + YIHR GRTARA G F+ E
Sbjct: 352 HHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTE 393
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 112 bits (279), Expect = 2e-24
Identities = 109/466 (23%), Positives = 194/466 (41%), Gaps = 75/466 (16%)
Query: 121 NVTTLNPESFHEQVTID-------------SLLEESLLDANVHKAISAMKFESLTPVQQR 167
N+T++ P+ E +T+D S L E L N+ + + +Q
Sbjct: 105 NITSVLPKWLAEPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDG 164
Query: 168 TIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQI 227
P+ + DV A TG+GKTL+++ P+ Q L + ++ V++ PTR+L +Q+
Sbjct: 165 RHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPR---LRCVVIVPTRELTVQV 221
Query: 228 ASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPN-------IIVGTPGRINDI 280
A + S L + T + + LN + ++V TPGR+ D
Sbjct: 222 AKTFEYYM-------SGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDH 274
Query: 281 LDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL-------NEFNTQGEEH---- 329
+ + + + + V+DEAD LL FQ + + ++ N+ N +
Sbjct: 275 IRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISP 334
Query: 330 -----------------IRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDS 372
++ L+FSAT+ + ++A+ ++ + + D + +
Sbjct: 335 TFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEI 394
Query: 373 IDQKLVITKSFAESMVALIQSIESE-------LLQKKNFKAILFL----PTVKFVDFFSE 421
D +V S ++ S+ SE L+ KN IL + E
Sbjct: 395 EDDAIVF--SVPPTLQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLE 452
Query: 422 TLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQL 481
+ ESL + F + + +R K++ RF + + VC+D+ ARG+ + ++V
Sbjct: 453 LIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINY 512
Query: 482 CVPTSLPNYIHRIGRTARAGESGAATIFLFREE----LKFVDELRR 523
P S+ +Y+HRIGRTARAG G A + E K V +LRR
Sbjct: 513 DPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLRR 558
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 111 bits (278), Expect = 3e-24
Identities = 108/398 (27%), Positives = 180/398 (45%), Gaps = 31/398 (7%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
LL + +AI+ FE + VQQ I P DV+ +AK+G GKT F+ Q +
Sbjct: 57 LLKPELLRAITDSGFEHPSEVQQVCI-PQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEP 115
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ V +++ TR+LA QI +E + + P + R+ GG N+ + ++
Sbjct: 116 VDGE----VSVLVLCHTRELAFQIKNEYARFSKYLPDV---RTAVFYGGINIKQDMEAFK 168
Query: 264 --TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNE 321
+ +P+I+V TPGR+N ++ K V VLDE D LL E + R + E
Sbjct: 169 DKSKSPHIVVATPGRLNALVREKILKV-NSVKHFVLDECDKLL------ESVDMRRDIQE 221
Query: 322 FNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK 381
+ ++FSAT+ + ++ + M +++D D+ H + Q V +
Sbjct: 222 VFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVD--DETKLTLH-GLQQHYVKLE 278
Query: 382 SFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
A++ ++LL F + ++F+ +V + L E I I HG +
Sbjct: 279 EKAKNRKI------NDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICI---HGGL 329
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
Q++R K FK + I V TDV RG+ V V +P S +Y+HR+GR R
Sbjct: 330 PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRF 389
Query: 501 GESGAATIFLFREE-LKFVDELRRDTNVVIKNQEDYLN 537
G G A F EE + +D+++ V I D ++
Sbjct: 390 GTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEID 427
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 111 bits (278), Expect = 3e-24
Identities = 106/438 (24%), Positives = 192/438 (43%), Gaps = 74/438 (16%)
Query: 147 ANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKT-------LAFLAPLFQ 199
A++ +A+ F++ T +Q T+ + + D++ A+TG+GKT LA + L Q
Sbjct: 224 ASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQ 283
Query: 200 HLISTKLQNPLAVKA--------------------------------------------- 214
I + ++ VK
Sbjct: 284 RNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYG 343
Query: 215 VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTP 274
+++TPTR+LA+Q+ + + + R + GG + K + L P+I+V TP
Sbjct: 344 LVLTPTRELAVQVKNHLVAAAKYT----GIRVAAIFGGLAVAKQERVLRQC-PDIVVATP 398
Query: 275 GRINDILDRVGAKYFK--DVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRT 332
GR+ ++ + K DV F V+DE D +++ G EL + + LN + Q + +
Sbjct: 399 GRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNS-DEQKKHQRQN 457
Query: 333 LLFSATMD--HNVQE-LAATIMNKKDCLFIDTVDKNDSEAHDSI---DQKLVITKSFAES 386
++SAT+ H++ + + + K+ TVD+ + + K+V S ++
Sbjct: 458 FVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQT 517
Query: 387 MVALIQSIESELLQKKNFKAILFLP-----TVKF---VDFFSETLSESLTKRIDIIKFHG 438
L +S + K++ F+ T+ F +D + + + H
Sbjct: 518 AQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHA 577
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTA 498
+ QK+R K ++RF+ + G+ + TDV ARG+ P+VEHV VP + NY+HR GRTA
Sbjct: 578 NMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTA 637
Query: 499 RAGESGAATIFLFREELK 516
RA + G +F+ E+K
Sbjct: 638 RANKHGITVMFMEPGEVK 655
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 110 bits (276), Expect = 5e-24
Identities = 109/420 (25%), Positives = 189/420 (44%), Gaps = 48/420 (11%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
L +SLLD+ + S T VQ + P + +D V ++ TG+GKTLA+L P+
Sbjct: 117 LPDSLLDSLEREGFSVP-----TDVQSAAV-PAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 200 HL-------ISTKLQNP--LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT-- 248
+ S+ +N ++A+IV P+R+L +QI EV+KL +R +
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLG-----PVHRRMVQQ 225
Query: 249 LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
L+GG N + + L P I+VGTPGRI +I + G + F VLDE D LL F
Sbjct: 226 LVGGANRMRQEEALKKNKPAIVVGTPGRIAEI-SKGGKLHTHGCRFLVLDEVDELLSFNF 284
Query: 309 QTELSLISRKLNEFNTQGEE-------HIRTLLFSATMDHNVQELAATIMNKKDCLFIDT 361
+ ++ I + + + G + + +T+L SAT+ +V A + ++ + +
Sbjct: 285 REDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANK 344
Query: 362 VDKNDSEAHDSIDQKLVITKSFAESMV-ALIQSIESEL-----LQKKNFKAILFLPTVKF 415
V D+ + L T S A+ + IQS+ L + K K V
Sbjct: 345 VTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHA 404
Query: 416 VDFFSETLSESLTKRI-DII-----------KFHGKIDQKKRTKLVDRFKKTNHGIFVCT 463
+D S + ++++ D++ + HG + + R+ ++ +FK + V
Sbjct: 405 LDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTN 464
Query: 464 DVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
++ ARG+ + V L +PT +Y HR GRT R G G ++ V ++ +
Sbjct: 465 ELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEK 524
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 109 bits (272), Expect = 2e-23
Identities = 97/355 (27%), Positives = 173/355 (48%), Gaps = 30/355 (8%)
Query: 215 VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTP 274
+++TPTR+LA+Q+ + + + ++ L+GG + K + L+ P I+V TP
Sbjct: 391 LVLTPTRELAVQVKQHIDAVAR----FTGIKTAILVGGMSTQKQQRMLNR-RPEIVVATP 445
Query: 275 GRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRT 332
GR+ +++ + + + V+DEAD +++ G ELS + LN+ +Q +T
Sbjct: 446 GRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLND--SQYNPKRQT 503
Query: 333 LLFSATMDHNVQELAATIMNKKDCLFIDTVDKND--SEAHDSIDQKLVITKSFAESMVAL 390
L+FSAT+ V + A I++KK +D K D + + VI + E+ V
Sbjct: 504 LVFSATLTL-VHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVET 562
Query: 391 IQSIESEL-LQKKNFKAILFL---PTVKFVDFFSETLS-----ESLTKRIDI--IKFHGK 439
+ + +K+F FL P V F+ ++S L K +DI + H
Sbjct: 563 LTETKIHCETDEKDFYLYYFLMQYPGRSLV--FANSISCIKRLSGLLKVLDIMPLTLHAC 620
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
+ QK+R + +++F + + + TDV ARG+ P V+HV VP + Y+HR GRTAR
Sbjct: 621 MHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 680
Query: 500 AGESGAATIFLFREEL----KFVDELRRDTNV-VIKNQEDYLNQDKENFDMISSI 549
A G + + + E++ K L++D ++ + Q Y++ KE + I
Sbjct: 681 ATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQI 735
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 109 bits (272), Expect = 2e-23
Identities = 103/385 (26%), Positives = 183/385 (46%), Gaps = 37/385 (9%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ L + I M +E +P+Q+ +I PI + D++A+AK GTGK+ A+L PL +
Sbjct: 88 EDYCLKRELLMGIFEMGWEKPSPIQEESI-PIALSGRDILARAKNGTGKSGAYLIPLLER 146
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
L K N ++A+++ PTR+LA+Q++ + Q + + + + GGTNL +
Sbjct: 147 L-DLKKDN---IQAMVIVPTRELALQVS---QICIQVSKHMGGAKVMATTGGTNLRDDIM 199
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
L ++++ TPGRI D++ + G V VLDEAD LL F + I L
Sbjct: 200 RLDD-TVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL- 256
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNK--KDCLFIDTVDKNDSEAHDSIDQKLV 378
++ + LL+SAT +VQ+ + + K + L + K ++ + + ++
Sbjct: 257 ------PKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTER-- 308
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHG 438
V + ++ S L + ++I+F + + V+ ++ +S+ H
Sbjct: 309 -------QKVHCLNTLFSRL---QINQSIIFCNSSQRVELLAKKISQ---LGYSCFYIHA 355
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTA 498
K+ Q+ R ++ F+ VCTD+ RG+ +V V P Y+HRIGR+
Sbjct: 356 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 415
Query: 499 RAGESGAATIFLF---REELKFVDE 520
R G G A + R LK ++E
Sbjct: 416 RFGHLGLAINLITYDDRFNLKSIEE 440
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 109 bits (272), Expect = 2e-23
Identities = 106/383 (27%), Positives = 181/383 (46%), Gaps = 48/383 (12%)
Query: 160 SLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTP 219
S + Q+ P L +++ +A TG GKT+ FL P+ + +++ P +A I++P
Sbjct: 118 SAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIER--HRQMKKP---QACIISP 172
Query: 220 TRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP-NIIVGTPGRIN 278
TR+L QI E KL + R +++ G +DL + + +I+V TPGR+
Sbjct: 173 TRELCEQIRVEASKLVAGS----RIRVVSIYG------KKQDLPSYSGVDIVVATPGRLI 222
Query: 279 DILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF---NTQGEEHIRTLLF 335
D+L R ++ VLDEAD LL +GF+ + R+++ F NTQ T LF
Sbjct: 223 DLLHRKKVD-LSEIRMFVLDEADKLLDMGFEIPI----REIHGFVPKNTQ------TCLF 271
Query: 336 SATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIE 395
SAT + + + +D + I+ SE +I Q++V ++ + ++ +++ +
Sbjct: 272 SATYSPKLTRMINYFL-PEDKVSIEI----SSETLKNIRQEIVEVRNKKKMLLNILKGPD 326
Query: 396 SEL-----LQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
L ++ + K ++F+ + L +S I + HG +Q R + +
Sbjct: 327 INLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKS---GILCVSLHGDKEQADRDEALK 383
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
F+ + V T V ARG+ V+ V +P + YIHRIGRT R G+SG + F
Sbjct: 384 GFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKSISFY 443
Query: 511 ---FREELK--FVDELRRDTNVV 528
+LK V+ LR N V
Sbjct: 444 DGGMTADLKKALVEVLRESKNAV 466
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 108 bits (271), Expect = 2e-23
Identities = 113/415 (27%), Positives = 182/415 (43%), Gaps = 32/415 (7%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE L N+ + F + T +Q I P+ + D++ ++K+GTGKTL ++ + Q
Sbjct: 28 EELRLYRNLLNGLKRNNFVTPTKIQAAAI-PMALAKMDLIIQSKSGTGKTLIYVIAVVQS 86
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
+ + P A+IV PTR+LAIQ+ L + S + ++ IGGT++ K K
Sbjct: 87 F-NPNINQP---HAMIVVPTRELAIQVQDTFFHLCK---SFRDFKCSAFIGGTDVAKDRK 139
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
++ +I+GTPGR+ + + K + VLDEAD L Q L KL
Sbjct: 140 RMN--ESRVIIGTPGRLLHLYENRVFDVSK-LRLLVLDEADQLYQT---KSLQHTVSKLI 193
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
E + + I SAT D N+ E A +M+K L ++ +L
Sbjct: 194 EAMPKNRQIIAC---SATYDQNLDERLAKVMDKP-MLISNSERATVLLGIRQFVYELPQQ 249
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
+ E M +Q + Q +AI+F + D + L+ S ID G +
Sbjct: 250 NNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTAS---GIDCHLISGAM 306
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
+Q +R + + ++ I V TD+ ARG+ P V + P Y+HRIGR R
Sbjct: 307 EQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRF 366
Query: 501 GESGAATIFL--------FREELKFVD---ELRRDTNVVIKNQEDYLNQDKENFD 544
G G A F+ FRE K + + + N+ ++ + +K NFD
Sbjct: 367 GSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFD 421
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 108 bits (270), Expect = 3e-23
Identities = 108/417 (25%), Positives = 192/417 (45%), Gaps = 36/417 (8%)
Query: 121 NVTTLNPESFHEQVTIDSLLEESLLDAN---VHKAISAMKFESLTPVQQRTIKPILTTEN 177
N + E E T+D LE + + + + + + LT +Q++ + + E+
Sbjct: 89 NASVRGEELQQEMQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEH 148
Query: 178 DVVAKAKTGTGKTLAFLAPLFQHLIST------KLQNPLAVKAVIVTPTRDLAIQIASEV 231
++A A+TG GKT+ +L P+ L+ KL P + +I+TP R+LA QIA
Sbjct: 149 CLIA-AETGCGKTITYLLPIVDKLLQKEVVTERKLNTP---RVLILTPGRELATQIAGVT 204
Query: 232 KKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKD 291
+KL Q + + +L+GG N + + + +I+V T G ++ ++ G +
Sbjct: 205 EKLTQGT----NLKVQSLLGG-NTKQLMMNPQFEEVDILVATLGALSKLVT-TGIYRMEQ 258
Query: 292 VDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH-IRTLLFSATMDHNVQELAATI 350
V VLDEADTLL F +LS R+ Q E+ + +L SATM N +E+ +
Sbjct: 259 VRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHKV 318
Query: 351 MNKKDCLFIDTVDKNDS----EAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKA 406
++ +DT+ + S + QK + S A+ L+ ++ +L +++
Sbjct: 319 ID------VDTIREVVSPHLHRLMSHVTQKF-LRLSKADRPATLLSLVKHDLAKRRPL-- 369
Query: 407 ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
I+F DF S L+ S ++ + +G + K R ++F+ + + TDVG
Sbjct: 370 IVFSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVG 426
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
+RG+ HV P + +YIHR GR R G A + + +D ++R
Sbjct: 427 SRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSRREIDVVQR 483
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 107 bits (268), Expect = 5e-23
Identities = 111/479 (23%), Positives = 205/479 (42%), Gaps = 64/479 (13%)
Query: 108 ENSDIEVFK----SKSFNVTTLNPESFHEQ------VTIDSLLEESLLDANVHKAISAMK 157
+N + E+FK + N+ L S Q TIDS + L + + ++
Sbjct: 172 QNGEREIFKVLGKQEMKNLEALKVTSSWVQNATTFSATIDSSTSQKLSQIELPEHLTVPS 231
Query: 158 FESLTPVQQRTIKPILTTE---------NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQN 208
S Q + P L E DV A TG+GKT+ ++ P+ L + +
Sbjct: 232 AISTWFPVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPV---LAAVGSKP 288
Query: 209 PLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPN 268
++AVI+ P + L QI E K+ N + ++L G + +K + L + PN
Sbjct: 289 SKILQAVILVPVQTLVAQIVDEFKRW---NDESGVAKVVSLSGANDFEKEARQLASDPPN 345
Query: 269 IIVGTPGRINDILDRVGAKYFKDVD-----FKVLDEADTLLQIGFQTELSLISRKLNEFN 323
+IV TP R+ + + +K +D F ++DEAD + ++ + L L+ EF
Sbjct: 346 VIVATPARL---VQHLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLV-----EFL 397
Query: 324 TQGEEHIRTL-------------LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAH 370
G E + L + SAT+ +V+EL + K V D +
Sbjct: 398 CGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITSG 457
Query: 371 ----DSIDQKLVITKSFAESMVALIQ-----SIESELLQKKNFKAILFLPTVKFVDFFSE 421
D + +L + S + +V ++ ++ + K + ++F+ V + +
Sbjct: 458 IPQVDHVSGRLALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAH 517
Query: 422 TLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQL 481
L E + ++ F ++ K+R K++++F K + + +C+DV ARG V+ V
Sbjct: 518 VLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINY 577
Query: 482 CVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNV----VIKNQEDYL 536
+P ++HR GRT RAG+ G +E + ++ + TN+ V + E+Y+
Sbjct: 578 NLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYI 636
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 107 bits (267), Expect = 6e-23
Identities = 103/370 (27%), Positives = 179/370 (47%), Gaps = 44/370 (11%)
Query: 151 KAISAMKFESLTPVQQRTIKPIL-TTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNP 209
K I AMKF+ + +Q+R + +L +++A++++GTGKT AF + + NP
Sbjct: 105 KGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV------NP 158
Query: 210 --LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP 267
+ +A+ + P+R+LA Q V+++ + LI + +K+ + +N
Sbjct: 159 EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQ-----LIVPDSFEKNKQ----INA 209
Query: 268 NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLL-QIGFQTELSLISRKLNEFNTQG 326
+IVGTPG + D++ R + K + VLDEAD +L Q G + + R L + +TQ
Sbjct: 210 QVIVGTPGTVLDLMRRKLMQLQK-IKIFVLDEADNMLDQQGLGDQCIRVKRFLPK-DTQ- 266
Query: 327 EEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES 386
+LFSAT V++ A I+ + L + T + N D+I Q + K+ A+
Sbjct: 267 -----LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV----DAIKQLYMDCKNEADK 317
Query: 387 MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRT 446
L + + +I+F+ T K + L ++ ++ HG + ++R
Sbjct: 318 FDVLTELYGLMTIGS----SIIFVATKKTANVLYGKLK---SEGHEVSILHGDLQTQERD 370
Query: 447 KLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT------SLPNYIHRIGRTARA 500
+L+D F++ + + T+V ARG+ P+V V +PT YIHRIGRT R
Sbjct: 371 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 430
Query: 501 GESGAATIFL 510
G G A F+
Sbjct: 431 GRKGVAISFV 440
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 107 bits (267), Expect = 6e-23
Identities = 100/372 (26%), Positives = 163/372 (42%), Gaps = 30/372 (8%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
LL + +AI FE + VQ I P DVV +AK+G GKT F+ Q L
Sbjct: 47 LLKPEILRAIGDCGFEHPSEVQHECI-PQAILGMDVVCQAKSGMGKTAVFVITTLQQLEP 105
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ V V + TR+LA QI+ E ++ + P +K GG + K + L
Sbjct: 106 VDGE----VSVVCMCHTRELAFQISKEYERFSKYLPGVKV---AVFFGGMAIKKDEERLA 158
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFN 323
P+I+VGTPGR+ L R G V + VLDE D ++ + R + E
Sbjct: 159 NDCPHIVVGTPGRML-ALARSGKLKLDKVKYFVLDECDKMIGDAD------MRRDVQEIV 211
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
+ + ++FSAT+ ++ + M +++D D+ H + Q V K
Sbjct: 212 KMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVD--DEAKLTLH-GLQQHYVKLKEA 268
Query: 384 AES--MVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKID 441
++ ++ L+ ++E + ++F+ VK + + L+E + I H ++
Sbjct: 269 EKNRRLLNLLDALEFN-------QVVIFVKAVKRCEALHQLLTE---QNFPSIAIHRQMA 318
Query: 442 QKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAG 501
Q++R FK I V TD+ RGM V V+ +P +Y+HR+ R R G
Sbjct: 319 QEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFG 378
Query: 502 ESGAATIFLFRE 513
G A F+ E
Sbjct: 379 TKGLAITFVSDE 390
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 107 bits (267), Expect = 6e-23
Identities = 103/383 (26%), Positives = 175/383 (44%), Gaps = 49/383 (12%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ L ++ I +E +P+Q+ +I LT + D++A+AK GTGKT A+ P+ +
Sbjct: 46 EDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQ-DILARAKNGTGKTGAYCIPVIE- 103
Query: 201 LISTKLQNPL-AVKAVIVTPTRDLAI---QIASEVKKLQQCNPSLKSYRSLTLIGGTNLD 256
K+Q L A++A+++ PTR+LA+ QI E+ K Q + + GGT+L
Sbjct: 104 ----KIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQ-------LKVMVTTGGTDLR 152
Query: 257 KSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLIS 316
+ L+ ++++ TPGRI D++++ G + VLDEAD LL FQ ++
Sbjct: 153 DDIMRLNG-TVHLVIATPGRILDLMEK-GVAKMEHCKTLVLDEADKLLSQDFQ---GILD 207
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
R +N + + +L+SAT + V M+K I+
Sbjct: 208 RLINFLPKERQ----VMLYSATFPNTVTSFMQKHMHKP----------------YEINLM 247
Query: 377 LVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKF 436
+T A +Q + F+ + ++ F + S E L K+I I +
Sbjct: 248 EELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCN--STQRVELLAKKITEIGY 305
Query: 437 -----HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
H K+ Q R ++ F++ N VC+D+ RG+ +V V P + Y+
Sbjct: 306 SCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYL 365
Query: 492 HRIGRTARAGESGAATIFLFREE 514
HRIGR+ R G G A + E+
Sbjct: 366 HRIGRSGRFGHLGVAINLITYED 388
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 107 bits (266), Expect = 8e-23
Identities = 106/386 (27%), Positives = 172/386 (44%), Gaps = 33/386 (8%)
Query: 129 SFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTG 188
S H D LL+ LL +AI FE + VQ I P DV+ +AK+G G
Sbjct: 40 SIHSSGFRDFLLKPELL-----RAIVDCGFEHPSEVQHECI-PQAILGMDVLCQAKSGMG 93
Query: 189 KTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT 248
KT F+ Q + Q V +++ TR+LA QI+ E ++ + PS+K
Sbjct: 94 KTAVFVLATLQQIEPVNGQ----VTVLVMCHTRELAFQISKEYERFSKYMPSVKVS---V 146
Query: 249 LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
GG ++ K + L P+++VGTPGRI ++ R + K+V VLDE D +L+
Sbjct: 147 FFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV-RNRSFSLKNVKHFVLDECDKMLE--- 202
Query: 309 QTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
+L + R + E + ++FSAT+ +++ + M +F+D D+
Sbjct: 203 --QLDM-RRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVD--DETKLT 257
Query: 369 AHDSIDQKLVITKSFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESL 427
H + Q V K ++ +LL F + I+F+ +V+ ++ L E
Sbjct: 258 LH-GLQQYYVKLKDSEKNRKLF------DLLDVLEFNQVIIFVKSVQRCMALAQLLVE-- 308
Query: 428 TKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL 487
+ I H + Q++R +FK I V T++ RGM V V+ +P
Sbjct: 309 -QNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDS 367
Query: 488 PNYIHRIGRTARAGESGAATIFLFRE 513
Y+HR+ R R G G A F+ E
Sbjct: 368 DTYLHRVARAGRFGTKGLAITFVSDE 393
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 106 bits (265), Expect = 1e-22
Identities = 104/404 (25%), Positives = 188/404 (45%), Gaps = 36/404 (8%)
Query: 110 SDIEVFKSK-SFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRT 168
+D E FK + + P++ T + E+ L + I FE +P+Q+ +
Sbjct: 15 NDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEES 74
Query: 169 IKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIA 228
I PI + D++A+AK GTGKT AF+ P + + + K + ++ +I+ PTR+LA+Q +
Sbjct: 75 I-PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSK----IQTLILVPTRELALQTS 129
Query: 229 SEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKY 288
K L + + + + GGT L + L+ +I+VGTPGR+ D+ + G
Sbjct: 130 QVCKTLGK----HMNVKVMVTTGGTTLRDDIIRLND-TVHIVVGTPGRVLDLAGK-GVAD 183
Query: 289 FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAA 348
F + V+DEAD LL F +I + L+ F ++ + L+SAT V+
Sbjct: 184 FSECTTFVMDEADKLLSPEF---TPIIEQLLSYF----PKNRQISLYSATFPLIVKNFMD 236
Query: 349 TIMNK--KDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKA 406
+NK + L + + ++ + +D+ V + ++ S+L + ++
Sbjct: 237 KHLNKPYEINLMDELTLRGVTQYYAFVDE---------SQKVHCLNTLFSKL---QINQS 284
Query: 407 ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVG 466
I+F + V+ ++ ++E H K+ Q R ++ F+ VC+D+
Sbjct: 285 IIFCNSTNRVELLAKKITE---LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
Query: 467 ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFL 510
RG+ +V V P + Y+HRIGR+ R G G A F+
Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFI 385
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 106 bits (265), Expect = 1e-22
Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 34/411 (8%)
Query: 129 SFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTG 188
S H D LL+ LL +AI FE + VQ I P DV+ +AK+G G
Sbjct: 41 SIHSSGFRDFLLKPELL-----RAIVDCGFEHPSEVQHECI-PQAILGMDVLCQAKSGMG 94
Query: 189 KTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT 248
KT F+ Q L Q V +++ TR+LA QI+ E ++ + P++K
Sbjct: 95 KTAVFVLATLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKV---AV 147
Query: 249 LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
GG ++ K + L P+I+VGTPGRI L R + K + +LDE D +L+
Sbjct: 148 FFGGLSIKKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLE--- 203
Query: 309 QTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
+L + R + E + ++FSAT+ ++ + M +F+D D+
Sbjct: 204 --QLDM-RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD--DETKLT 258
Query: 369 AHDSIDQKLVITKSFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESL 427
H + Q V K ++ +LL F + ++F+ +V+ ++ L E
Sbjct: 259 LH-GLQQYYVKLKDNEKNRKLF------DLLDVLEFNQVVIFVKSVQRCIALAQLLVE-- 309
Query: 428 TKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL 487
+ I H + Q++R +FK I V T++ RGM V + +P
Sbjct: 310 -QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 368
Query: 488 PNYIHRIGRTARAGESGAATIFLFRE-ELKFVDELRRDTNVVIKNQEDYLN 537
Y+HR+ R R G G A F+ E + K +++++ V I D ++
Sbjct: 369 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 419
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 106 bits (265), Expect = 1e-22
Identities = 102/390 (26%), Positives = 179/390 (45%), Gaps = 34/390 (8%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
LL + +AI FE + VQ I P D++ +AK+G GKT F+ Q L
Sbjct: 47 LLKPEILRAIVDCGFEHPSEVQHECI-PQAVLGMDILCQAKSGMGKTAVFVLATLQQL-- 103
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ + +++ TR+LA QI+ E ++ + P++K GG + K + L
Sbjct: 104 -EPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKV---AVFFGGMAIQKDEETLK 159
Query: 264 TLNPNIIVGTPGRINDIL--DRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNE 321
+ P+I+VGTPGRI ++ ++ K K VLDE D +L+ Q ++ +++
Sbjct: 160 SGTPHIVVGTPGRILALIRNKKLNLKLLKHF---VLDECDKMLE---QLDMRRDVQEIFR 213
Query: 322 FNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITK 381
G++ ++FSAT+ +++ + M +++D D+ H + Q V K
Sbjct: 214 STPHGKQ---VMMFSATLSKDIRPVCKKFMQDPMEVYVD--DEAKLTLH-GLQQHYVNLK 267
Query: 382 SFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
++ ELL F + ++F+ +V+ S+ L+E + I H +
Sbjct: 268 ENEKNKKLF------ELLDVLEFNQVVIFVKSVQRCVALSQLLTE---QNFPAIGIHRGM 318
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
Q++R +FK I V T++ RGM V V+ +P Y+HR+ R R
Sbjct: 319 TQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 378
Query: 501 GESGAATIFLFRE-ELKFVDEL--RRDTNV 527
G G A F+ E + K ++E+ R D N+
Sbjct: 379 GTKGLAITFVSDENDAKILNEVQDRFDVNI 408
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 106 bits (265), Expect = 1e-22
Identities = 115/454 (25%), Positives = 193/454 (42%), Gaps = 61/454 (13%)
Query: 124 TLNPESFHEQVTIDSLLEE-SLLDANVHKAISAMKFESLTPVQQRTIKPILTTE------ 176
+L PE E+V +++ L+ +A+ MK + L PVQ++ I IL
Sbjct: 125 SLQPE---EEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPF 181
Query: 177 --NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQI---ASEV 231
D+ A TG+GKTLAF P+ Q L+S ++ V+A++V P +LA+Q+ SE+
Sbjct: 182 RPRDICVSAPTGSGKTLAFAIPIVQ-LLSQRVD--CKVRALVVLPVAELALQVYRVISEL 238
Query: 232 KKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKD 291
+ L S + L + K + +I+V TPGR+ D L K
Sbjct: 239 CSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKS 298
Query: 292 VDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQ------------------GEEHIRTL 333
+ F V+DEAD ++ FQ L + + E Q G++ + L
Sbjct: 299 LKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHK-L 357
Query: 334 LFSATMDHNVQELA----------ATIMNKKDCLFIDTVDKNDSEAHDSIDQKL------ 377
LFSAT+ + ++L AT++ L T + D+EA Q +
Sbjct: 358 LFSATLSQDPEKLQDLRLFQPRLFATVLTMP-VLKDATEEGADTEALTDPGQFVGRYTTP 416
Query: 378 -VITKSFAESMVALIQSIESELLQKKNFKAILFLPT----VKFVDFFSETLSESLTKRID 432
+T+ + + + L L++K +K L + F + L + + ++
Sbjct: 417 AELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVS 476
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
+ G + K R + + F +C+D ARG+ V+ V P + YIH
Sbjct: 477 --ELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIH 534
Query: 493 RIGRTARAGESGAATIFLFREELKFVDELRRDTN 526
R+GRTARAG G A L +++ ++ D N
Sbjct: 535 RVGRTARAGRKGTAVTVLTEQDMTLFKKILSDAN 568
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 106 bits (264), Expect = 1e-22
Identities = 107/397 (26%), Positives = 174/397 (42%), Gaps = 45/397 (11%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
EE L + I +E +P+Q+ I PI + DV+A+AK GTGKT A+ P+ +
Sbjct: 60 EEFCLKRELLMGIFEKGWERPSPIQEAAI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLK--SYRSLTLIGGTNLDKS 258
+ TK ++A+++ PTR+LA+Q + Q C K R + GGT L
Sbjct: 119 IDPTKDY----IQALVMVPTRELALQTS------QICIELAKHLDIRVMVTTGGTILKDD 168
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRK 318
+ ++ +I+ TPGRI D++D+ A VLDEAD LL + FQ L + K
Sbjct: 169 ILRIYQ-KVQLIIATPGRILDLMDKKVAD-MSHCRILVLDEADKLLSLDFQGMLDHVILK 226
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
L + + LLFSAT V+ ++K+ E ++ I+
Sbjct: 227 L-------PKDPQILLFSATFPLTVKNF---------------MEKHLREPYE-INLMEE 263
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKF-- 436
+T A +Q + F + ++ F + S E L K+I + +
Sbjct: 264 LTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCN--STQRVELLAKKITELGYCC 321
Query: 437 ---HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHR 493
H K+ Q R ++ F++ VC+D+ RG+ +V V P Y+HR
Sbjct: 322 YYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHR 381
Query: 494 IGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
IGR+ R G G A + E+ + + ++ IK
Sbjct: 382 IGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIK 418
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 105 bits (263), Expect = 2e-22
Identities = 109/423 (25%), Positives = 197/423 (45%), Gaps = 54/423 (12%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTE--NDVVAKAKTGTGKTLAF-LAPL 197
EE L + + + AM F + +Q+ + P++ E +++A++++GTGKT AF LA L
Sbjct: 95 EELRLKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 198 FQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDK 257
Q + K L + +PT +LA+Q ++++ + P LK + + G L++
Sbjct: 154 SQVEPANKYPQCLCL-----SPTYELALQTGKVIEQMGKFYPELKLAYA---VRGNKLER 205
Query: 258 SLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQI-GFQTELSLIS 316
K ++ I++GTPG + D ++ K + VLDEAD ++ G Q + I
Sbjct: 206 GQK----ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
R L + + LLFSAT + +V + A ++ + + + K + E D+I Q
Sbjct: 262 RML-------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL----KREEETLDTIKQY 310
Query: 377 LVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKF 436
V+ S E AL + + +A++F T K + + LS+ + +
Sbjct: 311 YVLCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSK---EGHQVALL 363
Query: 437 HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL------PNY 490
G++ ++R +++RF++ + V T+V ARG+ V V +P Y
Sbjct: 364 SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY 423
Query: 491 IHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQ----DKENFDMI 546
+HRIGRT R G+ G A + VD + N++ + QE + + D ++ D I
Sbjct: 424 LHRIGRTGRFGKRGLA--------VNMVDS-KHSMNILNRIQEHFNKKIERLDTDDLDEI 474
Query: 547 SSI 549
I
Sbjct: 475 EKI 477
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 105 bits (263), Expect = 2e-22
Identities = 105/394 (26%), Positives = 178/394 (44%), Gaps = 38/394 (9%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
L+++LL N F+ TP+Q + + P+L ++A A TG+GKTLAFL P+
Sbjct: 130 LQQNLLSRN---------FDHPTPIQMQAL-PVLLQRRALMACAPTGSGKTLAFLTPIIN 179
Query: 200 HLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
L + K ++A+++ PTR+LA QI E +L + + S
Sbjct: 180 GLRAHKTTG---LRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAEC 236
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKY-FKDVDFKVLDEADTLLQIGFQTELSLISRK 318
K + +I+V TP R+ +L + V++ VLDEAD L++ G +
Sbjct: 237 KQRY----DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNN----FKEQ 288
Query: 319 LNEFNTQGEEHIRTL-LFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL 377
L++ + + FSAT V + A + + K+ + I +N A +++ Q+L
Sbjct: 289 LDDIYAACSNPTKCVAFFSATYTVPVAKWA--LRHLKNLVRITIGVQNS--ATETVQQEL 344
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
+ S +VA+ + L L V+ + + E L I++ H
Sbjct: 345 LFVGSEGGKLVAIRDLVRQGLQPP-------VLVFVQSKERAKQLFEELLYDGINVDVIH 397
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
+ Q +R V F++ + + +CT++ RG+ F V V P + +YIHRIGRT
Sbjct: 398 AERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRT 457
Query: 498 ARAGESGAATIFLFREELKFVDELRRDTNVVIKN 531
RAG G A F +E+ + R ++IKN
Sbjct: 458 GRAGRPGRAITFFTQEDTSNL----RGIALIIKN 487
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 105 bits (261), Expect = 3e-22
Identities = 104/422 (24%), Positives = 197/422 (46%), Gaps = 52/422 (12%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTE--NDVVAKAKTGTGKTLAFLAPLF 198
EE L + + + AM F + +Q+ + P++ E +++A++++GTGKT AF+ +
Sbjct: 94 EELRLKPQLLQGVYAMGFNRPSKIQENAL-PMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 199 QHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKS 258
+ + P + + ++PT +LA+Q ++++ + P LK + + G L++
Sbjct: 153 SR-VEPSDRYP---QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA---VRGNKLERG 205
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQI-GFQTELSLISR 317
K ++ I++GTPG + D ++ K + VLDEAD ++ G Q + I R
Sbjct: 206 QK----ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 261
Query: 318 KLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL 377
L + + LLFSAT + +V + A ++ + + + K + E D+I Q
Sbjct: 262 ML-------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL----KREEETLDTIKQYY 310
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
V+ S E AL + + +A++F T K + + LS+ + +
Sbjct: 311 VLCSSRDEKFQALCNLYGAITIA----QAMIFCHTRKTASWLAAELSK---EGHQVALLS 363
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL------PNYI 491
G++ ++R +++RF++ + V T+V ARG+ V V +P Y+
Sbjct: 364 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 423
Query: 492 HRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQ----DKENFDMIS 547
HRIGRT R G+ G A + VD + N++ + QE + + D ++ D I
Sbjct: 424 HRIGRTGRFGKRGLA--------VNMVDS-KHSMNILNRIQEHFNKKIERLDTDDLDEIE 474
Query: 548 SI 549
I
Sbjct: 475 KI 476
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 104 bits (259), Expect = 5e-22
Identities = 110/433 (25%), Positives = 189/433 (43%), Gaps = 64/433 (14%)
Query: 111 DIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISA--------------- 155
D+E + V+ LN S E+ DS+LEE D+N+ S
Sbjct: 40 DVEDDDDEEEAVSELNSLSIKEEEKPDSILEEPE-DSNIKAVTSGDTPYTSASRFEDLNL 98
Query: 156 -----------MKFESLTPVQQRTIKPILTTEND-VVAKAKTGTGKTLAFLAPLFQHLIS 203
MKFE + +Q ++ I+T + ++A+A G+GKT F+ + +
Sbjct: 99 SPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDP 158
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
T L+ P +A+ + PTR+LA Q ++ LQ+ L + T +
Sbjct: 159 T-LREP---QALCICPTRELANQ---NMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 264 TLNPNIIVGTPGRINDIL--DRVGAKYFKDVDFKVLDEADTLLQI-GFQTELSLISRKLN 320
++ ++++GTPG + + R+G + K + V DEAD +L GF+ + I + +
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKIL---VFDEADHMLATDGFRDDSLKIMKDIG 268
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
N + + LLFSAT + V++ A + + LF+ K + A DS+ Q V+
Sbjct: 269 RVNP----NFQVLLFSATFNETVKDFVARTVKDPNQLFV----KREDLALDSVKQYKVVC 320
Query: 381 KSFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
I+ I+ ++++ + + I+F+ T + L+E D+ HG
Sbjct: 321 PKEQNK----IEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEM---GYDVTSVHGN 373
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN-------YIH 492
+ + R K+V FK+ + + TDV ARG V V +PT Y+H
Sbjct: 374 LTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLH 433
Query: 493 RIGRTARAGESGA 505
R+GR R G GA
Sbjct: 434 RVGRAGRFGRKGA 446
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 103 bits (256), Expect = 1e-21
Identities = 95/403 (23%), Positives = 191/403 (46%), Gaps = 24/403 (5%)
Query: 133 QVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLA 192
Q+ + E+ L ++ K I ++ FE+ + +Q+ I+PI+ D+ A+A++GTGKT A
Sbjct: 33 QIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGR-DIRAQAQSGTGKTGA 91
Query: 193 FLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGG 252
F Q I Q+ + +++ TR++A Q A+ + L R L GG
Sbjct: 92 FAVAALQ--ICDMSQD--VTQILVLASTREIAAQNAARFEDLG----CFMGARVALLSGG 143
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTEL 312
+ + L P+I+VGTPGR+ +++ + ++ V+DEAD +L+ GFQ ++
Sbjct: 144 SPIAADKVALEK-KPHIVVGTPGRVEHMIN-INELSMDNIKLFVIDEADEMLKAGFQEQV 201
Query: 313 SLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKK---DCLFIDTVDKNDSEA 369
I R++ ++ ++ +FSAT D ++ I+ D + D K +
Sbjct: 202 KSIFRRIT-----NKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQY 256
Query: 370 HDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTK 429
+ ++ K + ++ + ++ +++ ++I+F+ + + + L +
Sbjct: 257 FIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWL---IRH 313
Query: 430 RIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPT--SL 487
+ ++ Q +R + ++RF+ + + + +RG+ ++ V+ L VP+
Sbjct: 314 EWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERK 373
Query: 488 PNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
YIHRIGR+ R G G A ++ ELK + + R N IK
Sbjct: 374 STYIHRIGRSGRYGRKGIAINIVYEHELKNLKAIERFYNTTIK 416
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 102 bits (255), Expect = 1e-21
Identities = 107/408 (26%), Positives = 170/408 (41%), Gaps = 59/408 (14%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
++ LL + +AI FE + VQQ TI P DV+ +AK+G GKT F+ Q
Sbjct: 65 KDFLLKPELSRAIIDCGFEHPSEVQQHTI-PQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
L P V V++ R+LA QI +E + + P +K+ GGT + K +
Sbjct: 124 LDPV----PGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKT---AVFYGGTPISKDAE 176
Query: 261 DLHTLN--PNIIVGTPGRINDILDRVGAKYFKDVDFK--VLDEADTLLQIGFQTELSLIS 316
L + P+I+V TPGR+ + V KY K V+DE D +L+ EL +
Sbjct: 177 LLKNKDTAPHIVVATPGRLKAL---VREKYIDLSHVKNFVIDECDKVLE-----ELDM-R 227
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQK 376
R + E + ++FSAT+ ++ + + +F+D D+
Sbjct: 228 RDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVD-------------DEA 274
Query: 377 LVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFF----SETLSESLTKRID 432
+ + + L + ++KN K L ++F S T + LTK ++
Sbjct: 275 KLTLHGLQQYYIKLEE-------REKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLN 327
Query: 433 IIKF-----HGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL 487
F HG + Q++R FK I V TDV RG+ + +
Sbjct: 328 ASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA 387
Query: 488 PNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQEDY 535
Y+HR+GR R G G A F+ +E D V+ K QE +
Sbjct: 388 DQYLHRVGRAGRFGTKGLAISFVSSKE---------DEEVLAKIQERF 426
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 102 bits (255), Expect = 1e-21
Identities = 104/425 (24%), Positives = 179/425 (41%), Gaps = 68/425 (16%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD + K+I + +E VQ+ I L +N ++ +A+TG+GKT AFL PL Q LI+
Sbjct: 96 LDERILKSIGELGWEKANQVQESVISLALENKN-IMGRARTGSGKTGAFLIPLVQKLIAE 154
Query: 205 KLQNPLAV--KAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
N +V AVI+ PT++L QI KL Q P L++ +L I L+D
Sbjct: 155 SKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAI-NLCDINEEENSVWLED- 212
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
+++V TPG++ + + +Y V + V+DEAD LL G++ E+ I KL
Sbjct: 213 ---RSHVVVTTPGKLLRMCS-LRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKL--- 265
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ L+ SAT+ ++ L M + + + D D + Q + S
Sbjct: 266 ----PPTYQCLMTSATLKDDMTTLKKLFMTGP--VITIKLTEGDLPNSDQLTQYQLTCGS 319
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIK---FHGK 439
E L+ + +L+ + ++ FV+ L R+ +K +
Sbjct: 320 DEERFAILVAMFKLKLIVGR---------SILFVNTIDRCYKLMLILRVFGLKSCILNSA 370
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVG--------------------------------- 466
+ R ++++F + ++ I + +DV
Sbjct: 371 MPANSRCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLD 430
Query: 467 -----ARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDEL 521
+RG+ F V +V P + YIHR+GRTAR G A F E ++++
Sbjct: 431 KESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQI 490
Query: 522 RRDTN 526
+ + N
Sbjct: 491 QEEIN 495
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 102 bits (255), Expect = 1e-21
Identities = 104/403 (25%), Positives = 168/403 (40%), Gaps = 45/403 (11%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
LL + +AI FE + VQ I P DV+ +AK+G GKT F+ Q +
Sbjct: 52 LLKPELLRAIVDSGFEHPSEVQHECI-PQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP 110
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ P V A+++ TR+LA QI +E + P K GG N+ L
Sbjct: 111 S----PGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS---VFYGGVNIKIHKDLLK 163
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSL-ISRKLNEF 322
P+I+VGTPGR+ L R K+V +LDE D +L+ SL + R + E
Sbjct: 164 NECPHIVVGTPGRVL-ALAREKDLSLKNVRHFILDECDKMLE-------SLDMRRDVQEI 215
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ ++FSAT+ ++ + M +++D D+ H + + +++
Sbjct: 216 FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD--DEAKLTLHGLVQHYIKLSEM 273
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
+ ++LL +F ++ VK V +E + I H + Q
Sbjct: 274 EKNRKL-------NDLLDALDFNQVVIF--VKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGE 502
++R FK+ + I V TD+ RG+ V V +P S Y+HR+GR R G
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384
Query: 503 SGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDM 545
G A F V + + LNQ +E F++
Sbjct: 385 KGLAITF-----------------VASASDSEVLNQVQERFEV 410
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 102 bits (254), Expect = 2e-21
Identities = 108/378 (28%), Positives = 174/378 (45%), Gaps = 57/378 (15%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPL 210
KAI FE + +Q+ I IL N VV ++K+GTGKT+A+ + L +TK+
Sbjct: 64 KAIYNQGFEKPSLIQKSAIPHILRGHN-VVVQSKSGTGKTIAYTCGV---LGNTKIGERT 119
Query: 211 AVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHT--LNPN 268
V ++VTPTR+L+ Q+ + L P G + +LK+ T +
Sbjct: 120 QV--MVVTPTRELSTQVTEVISGL--AGPL-----------GIKVFSALKNKITDSIGEE 164
Query: 269 IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ---IGFQTE--LSLISRKLNEFN 323
++VG+PG I +++ +G +K V VLDEAD LL +G QT L LIS
Sbjct: 165 VVVGSPGTILKLME-LGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLISGA----- 218
Query: 324 TQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSF 383
+ + FSAT V++ ++ + K D + KL ++
Sbjct: 219 -------QMIFFSATFSEQVKQTIEFYAPDAVKMYEERNGKPD-------EIKLFYIEAE 264
Query: 384 AESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
E+ ++S+ L + I+F+ T V++ + L + L + HG ++ +
Sbjct: 265 GENKRRALKSLYEYLSISQ---MIIFVSTKATVNYLRKKLEDDLHS---VSCLHGDLEIE 318
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVP-----TSLPNYIHRIGRTA 498
+R K V F+ + I + TDV +RGM P V + +P S YIHRIGR+
Sbjct: 319 EREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSG 378
Query: 499 RAGESGAATIFLFREELK 516
R G +G F+ EEL+
Sbjct: 379 RFGRTGFVVDFVRDEELE 396
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 102 bits (254), Expect = 2e-21
Identities = 104/403 (25%), Positives = 168/403 (40%), Gaps = 45/403 (11%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
LL + +AI FE + VQ I P DV+ +AK+G GKT F+ Q +
Sbjct: 52 LLKPELLRAIVDSGFEHPSEVQHECI-PQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP 110
Query: 204 TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLH 263
+ P V A+++ TR+LA QI +E + P K GG N+ L
Sbjct: 111 S----PGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS---VFYGGVNIKIHKDLLK 163
Query: 264 TLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSL-ISRKLNEF 322
P+I+VGTPGR+ L R K+V +LDE D +L+ SL + R + E
Sbjct: 164 NECPHIVVGTPGRVL-ALAREKDLSLKNVRHFILDECDKMLE-------SLDMRRDVQEI 215
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ ++FSAT+ ++ + M +++D D+ H + + +++
Sbjct: 216 FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD--DEAKLTLHGLVQHYIKLSEM 273
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
+ ++LL +F ++ VK V +E + I H + Q
Sbjct: 274 EKTRKL-------NDLLDALDFNQVVIF--VKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Query: 443 KKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGE 502
++R FK+ + I V TD+ RG+ V V +P S Y+HR+GR R G
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384
Query: 503 SGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQDKENFDM 545
G A F V + + LNQ +E F++
Sbjct: 385 KGLAITF-----------------VASASDSEVLNQVQERFEV 410
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 101 bits (252), Expect = 3e-21
Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 46/348 (13%)
Query: 209 PLAVKAVIVTPTRDLAIQIASEVKKLQQC--NPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
P A KA+IV P+R+LA Q + +K+ ++ NP L R L +IGG L L
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL---RELLIIGGVAARDQLSVLEN-G 339
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+I+VGTPGR++D++ G V F VLDEAD LL G+ ++ + ++ + + G
Sbjct: 340 VDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG 398
Query: 327 EEHIRTLLFSATM-DHNVQELAATIMN-------KKDCLFIDTVD--------------- 363
+ ++ ++ SAT+ +V++L+ IM+ K + DTV
Sbjct: 399 -KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE 457
Query: 364 --------KNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQK-KNFKAILFLPTVK 414
+D A D+ + ++E++ L +++ K +AI+F T
Sbjct: 458 RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI 517
Query: 415 FVDFFSETL------SESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGAR 468
D + + + + HG +R + ++RFKK + +CTDV AR
Sbjct: 518 DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR 577
Query: 469 GMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK 516
G+ V +V + +P NY+HRIGR RA G A + E+ K
Sbjct: 578 GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK 625
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 101 bits (252), Expect = 3e-21
Identities = 85/331 (25%), Positives = 154/331 (45%), Gaps = 39/331 (11%)
Query: 209 PLAVKAVIVTPTRDLAIQIASEVKKLQQ--CNPSLKSYRSLTLIGGTNLDKSLKDLHTLN 266
P A +A+I+ P+R+LA Q ++++K + NP + RSL LIGG L++ L
Sbjct: 284 PNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEV---RSLLLIGGVRLEEQKAQLMQ-G 339
Query: 267 PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG 326
+I+VGTPGR+ ++++ G F VLDEAD LL+ G+ + + +++ + + G
Sbjct: 340 THIVVGTPGRLEEMINS-GLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDG 398
Query: 327 EEHIRTLLFSATMD-HNVQELAATIMNKKDCLFIDTVDKNDSEAHD---SIDQKLVIT-- 380
++ ++ SAT+ V+++A +M+ + + D H +D ++ T
Sbjct: 399 -RRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQ 457
Query: 381 --------------------KSFAESMVALIQSIESE----LLQKKNF-KAILFLPTVKF 415
E++ ++ ++ E + K N +AI+F T +
Sbjct: 458 SLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQD 517
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
D L + K + HG ++R + ++ FK+ +CTDV ARG+ +
Sbjct: 518 CDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGL 577
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAA 506
+ + +P NY+HRIGR RA G A
Sbjct: 578 PFMINVTLPDDKTNYVHRIGRVGRAERMGLA 608
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 101 bits (251), Expect = 4e-21
Identities = 108/423 (25%), Positives = 193/423 (45%), Gaps = 46/423 (10%)
Query: 111 DIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIK 170
++++ K +V +P+S + S E L V KA+ M F+ T +Q+ T
Sbjct: 185 EVKMMKDVVVDVQRQDPKSPLYSI---SSFRELRLKPEVLKALDTMNFQFPTRIQE-TAL 240
Query: 171 PILTTE--NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIA 228
P+L E ++++A+A++GTGKT AF+ + I L P + + + PT +LA QI
Sbjct: 241 PLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCR-IDVNLMCP---QCICLAPTLELAKQIG 296
Query: 229 SEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKY 288
V+K+ + +LK + + I G N+ + L I++GTPG D L +
Sbjct: 297 EVVEKMGKFIDNLKIHYA---IKGGNM--AAMRGRKLTEQIVIGTPGITRDYLQKYKCID 351
Query: 289 FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAA 348
+ VLDEAD ++ T++S + E + ++++LFSAT D V A
Sbjct: 352 PSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE---DASDSVQSMLFSATYDEPVINFAT 408
Query: 349 TIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAIL 408
I+ + + K + +A +I Q + + +S A I ++ S L + ++
Sbjct: 409 KIIKNAIVVML----KREEQALPNIKQ-FYVQCACRDSKYAAIVNLYSGLAVASS---VI 460
Query: 409 FLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGAR 468
F T V + E + + ++D++ HG + +R + FK+ + + + T+V AR
Sbjct: 461 FCHTKASVMWLYENM-RARGHQVDVL--HGDMTVVERADTIIHFKRGDFKVLITTNVFAR 517
Query: 469 GMHFPSVEHVYQLCVPTSLPN-----------------YIHRIGRTARAGESGAATIFLF 511
G+ V V +P + Y+HRIGRT R G++G A +
Sbjct: 518 GIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLID 577
Query: 512 REE 514
E+
Sbjct: 578 SED 580
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 101 bits (251), Expect = 4e-21
Identities = 108/423 (25%), Positives = 193/423 (45%), Gaps = 46/423 (10%)
Query: 111 DIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIK 170
++++ K +V +P+S + S E L V KA+ M F+ T +Q+ T
Sbjct: 210 EVKMMKDVVVDVQRQDPKSPLYSI---SSFRELRLKPEVLKALDTMNFQFPTRIQE-TAL 265
Query: 171 PILTTE--NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIA 228
P+L E ++++A+A++GTGKT AF+ + I L P + + + PT +LA QI
Sbjct: 266 PLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCR-IDVNLMCP---QCICLAPTLELAKQIG 321
Query: 229 SEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKY 288
V+K+ + +LK + + I G N+ + L I++GTPG D L +
Sbjct: 322 EVVEKMGKFIDNLKIHYA---IKGGNM--AAMRGRKLTEQIVIGTPGITRDYLQKYKCID 376
Query: 289 FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAA 348
+ VLDEAD ++ T++S + E + ++++LFSAT D V A
Sbjct: 377 PSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE---DASDSVQSMLFSATYDEPVINFAT 433
Query: 349 TIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAIL 408
I+ + + K + +A +I Q + + +S A I ++ S L + ++
Sbjct: 434 KIIKNAIVVML----KREEQALPNIKQ-FYVQCACRDSKYAAIVNLYSGLAVASS---VI 485
Query: 409 FLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGAR 468
F T V + E + + ++D++ HG + +R + FK+ + + + T+V AR
Sbjct: 486 FCHTKASVMWLYENM-RARGHQVDVL--HGDMTVVERADTIIHFKRGDFKVLITTNVFAR 542
Query: 469 GMHFPSVEHVYQLCVPTSLPN-----------------YIHRIGRTARAGESGAATIFLF 511
G+ V V +P + Y+HRIGRT R G++G A +
Sbjct: 543 GIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLID 602
Query: 512 REE 514
E+
Sbjct: 603 SED 605
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 101 bits (251), Expect = 4e-21
Identities = 108/423 (25%), Positives = 193/423 (45%), Gaps = 46/423 (10%)
Query: 111 DIEVFKSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIK 170
++++ K +V +P+S + S E L V KA+ M F+ T +Q+ T
Sbjct: 594 EVKMMKDVVVDVQRQDPKSPLYSI---SSFRELRLKPEVLKALDTMNFQFPTRIQE-TAL 649
Query: 171 PILTTE--NDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIA 228
P+L E ++++A+A++GTGKT AF+ + I L P + + + PT +LA QI
Sbjct: 650 PLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCR-IDVNLMCP---QCICLAPTLELAKQIG 705
Query: 229 SEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKY 288
V+K+ + +LK + + I G N+ + L I++GTPG D L +
Sbjct: 706 EVVEKMGKFIDNLKIHYA---IKGGNM--AAMRGRKLTEQIVIGTPGITRDYLQKYKCID 760
Query: 289 FKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAA 348
+ VLDEAD ++ T++S + E + ++++LFSAT D V A
Sbjct: 761 PSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE---DASDSVQSMLFSATYDEPVINFAT 817
Query: 349 TIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAIL 408
I+ + + K + +A +I Q + + +S A I ++ S L + ++
Sbjct: 818 KIIKNAIVVML----KREEQALPNIKQ-FYVQCACRDSKYAAIVNLYSGLAVASS---VI 869
Query: 409 FLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGAR 468
F T V + E + + ++D++ HG + +R + FK+ + + + T+V AR
Sbjct: 870 FCHTKASVMWLYENM-RARGHQVDVL--HGDMTVVERADTIIHFKRGDFKVLITTNVFAR 926
Query: 469 GMHFPSVEHVYQLCVPTSLPN-----------------YIHRIGRTARAGESGAATIFLF 511
G+ V V +P + Y+HRIGRT R G++G A +
Sbjct: 927 GIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLID 986
Query: 512 REE 514
E+
Sbjct: 987 SED 989
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 101 bits (251), Expect = 4e-21
Identities = 103/398 (25%), Positives = 172/398 (42%), Gaps = 37/398 (9%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E+ L + I FE +P+Q+ +I PI T D++A+AK GTGKT AF P+ +
Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESI-PIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLK 260
+ N + V+ D Q+ E+ K LK +T GGT+L +
Sbjct: 193 IDQDN--NVIQGNCVL-----DHTSQVCKELGK------HLKIQVMVTT-GGTSLKDDIM 238
Query: 261 DLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN 320
L+ +++VGTPGRI D L + G KD V+DEAD LL FQ + + L
Sbjct: 239 RLYQ-PVHLLVGTPGRILD-LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP 296
Query: 321 EFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVIT 380
E + L+FSAT V++ + ++ D I Q
Sbjct: 297 ESR-------QILMFSATFPVTVKDFKDRFLTNPY-----VINLMDELTLKGITQFYAFV 344
Query: 381 KSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKI 440
+ + + ++ S+L ++ I+F +V V+ ++ ++E H K+
Sbjct: 345 EE--RQKIHCLNTLFSKLQINQS---IIFCNSVNRVELLAKKITEL---GYSCFYIHAKM 396
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
Q R ++ F+ VCTD+ RG+ +V V P + Y+HR+GR+ R
Sbjct: 397 LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF 456
Query: 501 GESGAATIFLFREELKFVDELRRDTNVVIKNQEDYLNQ 538
G G A + E+ + + ++ IK +++Q
Sbjct: 457 GHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 494
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 100 bits (249), Expect = 7e-21
Identities = 86/326 (26%), Positives = 161/326 (49%), Gaps = 24/326 (7%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD+ + +AI + F+ T +Q I L + D++AKA TG+GKTLA+L P+ + ++
Sbjct: 24 LDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEY 83
Query: 205 KLQ----NPLAVKAVIVTPTRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSL 259
K +I+ PTR+LA Q+ + ++KL C+ +++ I D L
Sbjct: 84 KKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLN----ISSDMSDSVL 139
Query: 260 KDLHTLNPNIIVGTPGRINDILD-RVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRK 318
L P IIVGTPG++ D+L ++ + ++ F V+DE D +L G+Q +L+ I
Sbjct: 140 STLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEY 199
Query: 319 LNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
L +++++T L SAT++ ++Q L +K C + ND E + + ++ L
Sbjct: 200 L-----PLKKNLQTFLMSATLNDDIQAL-----KQKFCRSPAILKFNDEEINKNQNKLLQ 249
Query: 379 ITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHG 438
+E L+ + +L K K ++F+ + + + + E + I+ +
Sbjct: 250 YYVKVSEFDKFLLCYVIFKLNLIKG-KTLIFVNNID-RGYRLKLVMEQFGIKSCIL--NS 305
Query: 439 KIDQKKRTKLVDRFKKTNHGIFVCTD 464
++ R +VD+F K + + + TD
Sbjct: 306 ELPVNSRQHIVDQFNKNVYQLLIATD 331
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 99.4 bits (246), Expect = 2e-20
Identities = 89/406 (21%), Positives = 173/406 (41%), Gaps = 48/406 (11%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD + KA++ + ++ T +Q I P+L DVV +A+TG+GKT + PL Q ++++
Sbjct: 16 LDQRILKAVAQLGWQQPTLIQSTAI-PLLLEGKDVVVRARTGSGKTATYALPLIQKILNS 74
Query: 205 KLQ-NPLAVKAVIVTPTRDLAIQIASEVKKL-QQCNPSLKSYRSLTLIGGTNLDKSLKDL 262
KL + V AV++ PT+ L Q +++L + C K R + +N + +
Sbjct: 75 KLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCG---KVVRVADIADSSNDTVTQRHA 131
Query: 263 HTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEF 322
+ +P+I+V TP + + K V+ V+DEAD + G++ + + + L
Sbjct: 132 LSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPI 191
Query: 323 NTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ +L SAT+ +V + +N L +++ + D + + ++ +
Sbjct: 192 -------YQAVLVSATLTDDVVRMKGLCLNNPVTL---KLEEPELVPQDQLSHQRILAEE 241
Query: 383 FAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQ 442
+ + L ++ L++ K+ + + V F E I + ++
Sbjct: 242 NDKPAI-LYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFG------IRACVLNSELPA 294
Query: 443 KKRTKLVDRFKKTNHGIFVCTDV-------------------------GARGMHFPSVEH 477
R + +F K + I + +D +RG+ F V +
Sbjct: 295 NIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNN 354
Query: 478 VYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
V P + +YIHR GRTAR G+ F+ +E K D + +
Sbjct: 355 VINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEK 400
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 97.8 bits (242), Expect = 5e-20
Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 36/350 (10%)
Query: 157 KFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVI 216
+F++ TP+Q + + +N + A TGTGKTLAFL P+ I K++ + +I
Sbjct: 14 QFKAQTPIQAAVWEKLAQGDN-IFGLAPTGTGKTLAFLLPILSR-IDPKVKQ---TQVLI 68
Query: 217 VTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGR 276
+ P+++LA+Q + ++ +L +LIGG N + L P+I+VGT GR
Sbjct: 69 LAPSQELAMQTTAVAREWG----ALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGR 124
Query: 277 INDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFS 336
+ +LD GA + + DEAD +L + L ++ +L ++ LFS
Sbjct: 125 VLTMLDG-GALKLNGLQTVIFDEADAMLSDERRDSLQALAAQL-------PTDVQLGLFS 176
Query: 337 ATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIES 396
AT +++ +A T + + + T D+ A + + + V K+ A ++ L ++ +
Sbjct: 177 ATSGVDLKYVADTFGQEVRPVSVGT----DAPAAITHEFQYVDQKAKASLLIQLARNKQ- 231
Query: 397 ELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKK--RTKLVDRFKK 454
+A++F T+ + TL + + I G D+++ R + FKK
Sbjct: 232 --------QALVFFNTISGLVNMQATLRHAHASVMSI----GSNDKRQVQRADALRLFKK 279
Query: 455 TNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
+ + TDV ARG+ + V +P YIHR GRT R G+ G
Sbjct: 280 GEVSLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMGKPG 329
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 96.7 bits (239), Expect = 1e-19
Identities = 109/423 (25%), Positives = 185/423 (42%), Gaps = 75/423 (17%)
Query: 156 MKFESLTPVQ----QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLA 211
M SL PVQ TI P E D+ + TG+GKTL++ P+ Q L S ++
Sbjct: 1 MGISSLFPVQVAVWHETIGPG-GFERDICVNSPTGSGKTLSYALPIVQLLASRPVR---C 56
Query: 212 VKAVIVTPTRDLAIQIASEVKKLQQC-NPSLKSYRSLTLIGG--TNLDKSLK-------D 261
++A++V PTRDLA+Q+ + S+ S + I G + L K+ K D
Sbjct: 57 LRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYD 116
Query: 262 LHTLNPN------IIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQT----- 310
L+ N I+V TPGR+ D ++ + + + V+DE D LL+ +Q+
Sbjct: 117 PDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTV 176
Query: 311 ------------------------ELSLISRKLNEFNTQGEEHIRT--LLFSATMDHNVQ 344
L + R+ E +G+ + R ++ SAT+ +
Sbjct: 177 LQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPS 236
Query: 345 ELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES------MVALIQSIESEL 398
+L ++ LF+ T + + +KL + E+ +VAL++S E E
Sbjct: 237 KLIQLDLHHP--LFMTT-----GGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGE- 288
Query: 399 LQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHG 458
K I+F +V+ + L+ +I ++ G ++Q R+K + F+K +
Sbjct: 289 ------KCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQ 342
Query: 459 IFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFV 518
+ V +D RGM V +V +P +IHR GRTARAG++G L E++
Sbjct: 343 VLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRF 402
Query: 519 DEL 521
+L
Sbjct: 403 SKL 405
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 95.9 bits (237), Expect = 2e-19
Identities = 84/376 (22%), Positives = 167/376 (44%), Gaps = 29/376 (7%)
Query: 151 KAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQ--- 207
KA+ F+ +Q P++ ++ ++A ++G+GKTLA+L P+ Q L +LQ
Sbjct: 387 KALKEQNFDRPAHIQAMAFSPVIDGKSCIIAD-QSGSGKTLAYLVPVIQRLREEELQGHS 445
Query: 208 --NPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTL 265
+P + +++ PT +LA Q+ + + + + S +RS+ + GG L++L
Sbjct: 446 KSSPGCPRVIVLVPTAELASQVLANCRSISK---SGVPFRSMVVTGGFRQRTQLENLEQ- 501
Query: 266 NPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQ 325
++++ TPGR +++ G ++ +LDE D L G + + +N
Sbjct: 502 GVDVLIATPGRFTYLMNE-GILGLSNLRCAILDEVDIL--FGDDEFEAALQNLINSSPVT 558
Query: 326 GEEHIRTLLFSATMDHNVQEL---AATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKS 382
+ T + + + E+ +M + + +++ + + + +
Sbjct: 559 AQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETA 618
Query: 383 FAESMVALIQSIESELLQKKNFKAILF---LPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
F AL+Q +E + K I+F + T + V+ + + +++ ++ FH
Sbjct: 619 FQNKKTALLQIMEENPVS----KTIIFCNKIETCRKVENIFKRVDRK-ERQLHVLPFHAA 673
Query: 440 IDQKKRTKLVDRFKKT----NHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIG 495
+ Q+ R + F + N VCTD +RG+ F V+HV P Y+ R+G
Sbjct: 674 LSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVG 733
Query: 496 RTARAGESGAATIFLF 511
RTAR G G F+F
Sbjct: 734 RTAR-GARGKGKAFIF 748
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 94.4 bits (233), Expect = 5e-19
Identities = 94/368 (25%), Positives = 162/368 (43%), Gaps = 35/368 (9%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKA---VIVT 218
T VQ TI P L VV A+TG+GKTL++L PL Q L+ + L + A +++
Sbjct: 152 TTVQSSTI-PSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLV 210
Query: 219 PTRDLAIQIASEVKKLQQCNPSLKSYRSLTLI-----GGTNLDKSLKDLHTL-NPNIIVG 272
P+R+LA Q+ + + L RSL L+ GG + + L + +++V
Sbjct: 211 PSRELAQQVRAVAQPLG---------RSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVA 261
Query: 273 TPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLN------EFNTQG 326
TPG + L + + + F VLDEADTLL F + I K + +
Sbjct: 262 TPGALWKAL-KSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPF 320
Query: 327 EEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES 386
+ +L AT V +L + + I + + H + Q + K A+
Sbjct: 321 NPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPH--VKQTFLRLKG-ADK 377
Query: 387 MVALIQSIESELLQKKNFKA---ILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQK 443
+ L+ ++ ++ + ++F + V++ L + +I ++ G++
Sbjct: 378 VAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH---KIQHLRLQGQMPAL 434
Query: 444 KRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGES 503
R + F+K++ I +CTD+ +RG+ VE V P +L +YIHR GR R G
Sbjct: 435 MRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSE 494
Query: 504 GAATIFLF 511
T+ F
Sbjct: 495 VPGTVISF 502
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 94.4 bits (233), Expect = 5e-19
Identities = 106/383 (27%), Positives = 167/383 (42%), Gaps = 39/383 (10%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH 200
E LL V + + A FE +PVQ + I P+ D++ +AK+GTGKT F
Sbjct: 65 ESLLLSRPVLEGLRAAGFERPSPVQLKAI-PLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 201 LISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKS-- 258
L+ L+N L+ + +I+ PTR++A+QI S + + ++ IGGT L +
Sbjct: 124 LV---LEN-LSTQILILAPTREIAVQIHSVITAI---GIKMEGLECHVFIGGTPLSQDKT 176
Query: 259 -LKDLHTLNPNIIVGTPGRINDILDRVGAKYFK--DVDFKVLDEADTLLQIG-FQTELSL 314
LK H I VG+PGRI +++ Y + +LDEAD LL+ G FQ +++
Sbjct: 177 RLKKCH-----IAVGSPGRIKQLIE---LDYLNPGSIRLFILDEADKLLEEGSFQEQINW 228
Query: 315 ISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNK--KDCLFIDTVDKNDSEAHDS 372
I L + L SAT E A + K +D F+ + S
Sbjct: 229 IYSSLPASK-------QMLAVSAT----YPEFLANALTKYMRDPTFVRLNSSDPSLIGLK 277
Query: 373 IDQKLVITKSFAESMVALIQSIESELLQKKNF-KAILFLPTVKFVDFFSETLSESLTKRI 431
K+V + A + EL + F +A++F ++ LS +K
Sbjct: 278 QYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILS---SKGF 334
Query: 432 DIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
G ++Q +R + + K + + + TD+ +RG+ V V L VP Y+
Sbjct: 335 PAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYM 394
Query: 492 HRIGRTARAGESGAATIFLFREE 514
HRIGR R G G + R E
Sbjct: 395 HRIGRAGRFGTLGLTVTYCCRGE 417
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 92.0 bits (227), Expect = 3e-18
Identities = 71/237 (29%), Positives = 115/237 (47%), Gaps = 21/237 (8%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
LD + +AI +FE T VQ TI P+ D+VA+A+TG+GKT A+L P+ + L+
Sbjct: 21 LDPRLQRAIHKCEFEKPTSVQSETI-PLALEGKDLVAQARTGSGKTAAYLIPILELLLKQ 79
Query: 205 KL--QNPLAVKAVIVTPTRDLAIQIASEVKKLQQ-CNPSLKSYRSLTLIGGTNLDKSLKD 261
K +N + A+++ PTR+LA Q+ + ++KL C+ ++ T T L D
Sbjct: 80 KQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLD 139
Query: 262 LHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNE 321
L P+I++ TP R + G + F V+DEAD +L G+ ++ +SR L
Sbjct: 140 L----PDIVIATPSRC-VVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSL-- 192
Query: 322 FNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLV 378
++ L SAT+ N+ L + L + D EA + Q +V
Sbjct: 193 -----PRGTQSFLMSATLSKNIASLQKLVCRNPFILAV-----KDKEASGKLTQYVV 239
Score = 51.2 bits (121), Expect = 5e-06
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 18/204 (8%)
Query: 441 DQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARA 500
D+ K+ K V + K+ +G+ ARG+ F +V V +P++ +YIHRIGRTARA
Sbjct: 370 DKSKKKKRVKQDKE--YGV-------ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA 420
Query: 501 GESGAATIFLF------REELKFVDELRRDTNVVIKNQEDYLNQDKENFDMISSIITNNP 554
G+ G A F+ + + ++ ++D +V+ + ++ ++ +FD + I
Sbjct: 421 GKPGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQISLQPYSFDK-NQIDAFRY 479
Query: 555 DFPEALKSI--IGFYKGVQNEYRLNYKVAQNVLRSFSELHSDSSMLLRFRPSEINNFFSN 612
+AL+++ + E + +++ + F+E + L S + +
Sbjct: 480 RMEDALRAVTTVAVSAARAAELKQELLISEKLKSYFAENPDELLSLTHDTVSSVRLGHTQ 539
Query: 613 RDMRFVSDLIDVKNPHSFGKDREF 636
R +R V + + K + KD F
Sbjct: 540 RHLRHVPEYLLPKGMQAVNKDIGF 563
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 90.1 bits (222), Expect = 1e-17
Identities = 88/326 (26%), Positives = 159/326 (47%), Gaps = 32/326 (9%)
Query: 144 LLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS 203
+L ++H + MK TP+Q+ + PI+ + DVVA A TG+GKTLAFL P L+
Sbjct: 705 VLPQDLHDNLKRMKMNRPTPIQRASFFPIMHGD-DVVACAHTGSGKTLAFLIPFVIKLME 763
Query: 204 ------TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDK 257
+ + +IV PTR+L Q + ++L LK + GG + +
Sbjct: 764 EFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTY-ETGLKCGLA---FGGYSRNA 819
Query: 258 SLKDLHTLNP-NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLL-QIGFQTELSLI 315
+++ L + + NI+V T GR+ D ++ G + + VLDEAD ++ I F E+S I
Sbjct: 820 NVQHLRSFSQLNILVATMGRLQDFVN-AGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKI 878
Query: 316 SRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQ 375
+ GE +T+LFSA+ ++Q K+ + VDK + A++ IDQ
Sbjct: 879 ------IGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQ-VDKFGT-ANEKIDQ 930
Query: 376 KLV-ITKSFAESMVALIQSIESELLQK------KNFKAILFLPTVKFVDFFSETLSESLT 428
K++ + ++ + + I+ + + K ++F+ +VKF D + +S +
Sbjct: 931 KILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSA-- 988
Query: 429 KRIDIIKFHGKIDQKKRTKLVDRFKK 454
+ I H +Q++R + +D F++
Sbjct: 989 -GVSTISMHSYQNQEQRDRTLDDFRR 1013
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 87.0 bits (214), Expect = 8e-17
Identities = 72/243 (29%), Positives = 122/243 (49%), Gaps = 21/243 (8%)
Query: 294 FKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIR-TLLFSATMDHNVQELAATIMN 352
+ VLDEAD +L +GF+ ++ R++ E N + R T +FSAT +Q LA +
Sbjct: 13 YLVLDEADRMLDMGFEPQI----RQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFL- 67
Query: 353 KKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAES--MVALIQSIESELLQKKNFKAILFL 410
K++ +F+ V + S + ++I QK+V + + ++ L+ + L ++F+
Sbjct: 68 KENYVFL-AVGRVGSTS-ENIMQKIVWVEEDEKRSYLMDLLDATGDSSL------TLVFV 119
Query: 411 PTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGM 470
T + + L+ + +++ HG + Q +R K +D F+ I V T V ARG+
Sbjct: 120 ETKRGASDLAYYLNR---QNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGL 176
Query: 471 HFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIK 530
P+V+HV +P+ + Y+HRIGRT R G G AT F + EL +V
Sbjct: 177 DIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELM--DLIVEA 234
Query: 531 NQE 533
NQE
Sbjct: 235 NQE 237
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 85.9 bits (211), Expect = 2e-16
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 20/195 (10%)
Query: 162 TPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTR 221
TPVQ I P + D + AKTG+GKT AF+ P+ Q L ++P + +++TPTR
Sbjct: 26 TPVQLGCI-PAILEGRDCLGCAKTGSGKTAAFVLPILQKLS----EDPYGIFCLVLTPTR 80
Query: 222 DLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDIL 281
+LA QIA + L + + ++GG ++ +L + P++++ TPGR+ D L
Sbjct: 81 ELAYQIAERFRVLGKP----LGLKDCIIVGGMDMVAQALEL-SRKPHVVIATPGRLADHL 135
Query: 282 DRVGAKYFKDVDFKVLDEADTLLQIG---FQTELSLISRKLNEFNTQGEEHIRTLLFSAT 338
K + F V+DEAD LL+ G F +L I + +TLLFSAT
Sbjct: 136 RSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV-------PARRQTLLFSAT 188
Query: 339 MDHNVQELAATIMNK 353
+ ++EL N+
Sbjct: 189 LTDTLRELQGLATNQ 203
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 85.5 bits (210), Expect = 2e-16
Identities = 97/384 (25%), Positives = 167/384 (43%), Gaps = 32/384 (8%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIS- 203
L + + + +K+ ++ +Q I +L +DV+ +A+T GKT AF P+ ++
Sbjct: 388 LHPTILETLKRIKYNNVRTIQGAMIPQVLDG-HDVLGQAETSAGKTAAFGLPIIDKILRM 446
Query: 204 -----TKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKS 258
K + A+I+ PTR+LA QI ++ Q + L G ++ +S
Sbjct: 447 DEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIV----LLSYGQSDRARS 502
Query: 259 LKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRK 318
L ++ +I++GT GRI D + + F V DEAD LLQ + L +
Sbjct: 503 LNEIRN-GCDILIGTCGRIMDFTVKSHISLLH-LRFLVFDEADRLLQDMKKDPLGHLGAI 560
Query: 319 LNEFNTQGEEHIR-TLLFSATMDHNVQELAATIMNKKDCL--FIDTVDKNDSEAHDSIDQ 375
+ + R T++ SAT + +V +A +M + I V N ++
Sbjct: 561 IKDAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLAN-GRLSKRVNL 619
Query: 376 KLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSES--LTKRIDI 433
+ K AE A ++ I + + K K I+F+ D + L+ L + +
Sbjct: 620 EFFECKGLAEKN-AKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTL-- 676
Query: 434 IKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPN---- 489
HG Q R KL++ FK + V TD+ +RG+ ++ V +P P+
Sbjct: 677 ---HGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGAD 733
Query: 490 -YIHRIGRTARAG--ESGAATIFL 510
+IHR GRT R G E+G F+
Sbjct: 734 TFIHRAGRTGRTGRKENGLCVSFV 757
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 84.3 bits (207), Expect = 5e-16
Identities = 89/384 (23%), Positives = 167/384 (43%), Gaps = 52/384 (13%)
Query: 141 EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTE-NDVVAKAKTGTGKTLAFLAPLFQ 199
EE L + K I +MKF+ + +Q++ + +L+ +++ ++++GTGKT AF +
Sbjct: 117 EELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLS 176
Query: 200 HLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
+ + P +A+ + P+R+LA QI V ++ + ++ + S+
Sbjct: 177 R-VDASVPKP---QAICLAPSRELARQIMDVVTEMGKYTEVKTAF---------GIKDSV 223
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
++ I++GTPG + D++ R +D+ VLDEAD +L + S+ + L
Sbjct: 224 PKGAKIDAQIVIGTPGTVMDLMKRRQLD-ARDIKVFVLDEADNMLDQQGLGDQSMRIKHL 282
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
NTQ +LFSAT V++ A + A ++ + +L
Sbjct: 283 LPRNTQ------IVLFSATFSERVEKYA------------------ERFAPNANEIRLKT 318
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFF--SETLSESLTKRI-----D 432
+ E + L +SE + + L T+ F + +E + +R+
Sbjct: 319 EELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT 378
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL----- 487
+ G ++ +R ++D F+ + V T+V ARG+ V V +P
Sbjct: 379 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 438
Query: 488 -PNYIHRIGRTARAGESGAATIFL 510
Y+HRIGRT R G G + F+
Sbjct: 439 PQTYLHRIGRTGRFGRVGVSINFV 462
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 83.6 bits (205), Expect = 9e-16
Identities = 92/392 (23%), Positives = 173/392 (43%), Gaps = 45/392 (11%)
Query: 156 MKFESLTPVQQRTIKPILT-TENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKA 214
M F + +Q+ + +L +++A++++GTGKT AF+ + + + +L +
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALEL----FPQC 56
Query: 215 VIVTPTRDLAIQIASEVKKLQQCNPSLK---SYRSLTLIGGTNLDKSLKDLHTLNPNIIV 271
+ + PT +LA+Q V+++ + ++ + R + GT++ K II+
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ----------III 106
Query: 272 GTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQI-GFQTELSLISRKLNEFNTQGEEHI 330
GTPG + D ++ + VLDEAD ++ GF I R L
Sbjct: 107 GTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRAL-------PSEC 159
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+ LLFSAT + +V A I+ + + + + + ++I Q V+ + + AL
Sbjct: 160 QMLLFSATFEDSVWHFAERIIPDPNVIKL----RKEELTLNNIRQYYVLCEHRKDKYQAL 215
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
S + + AI+F T + + + E + + G++ ++R ++
Sbjct: 216 CNIYGSITIGQ----AIIFCQTRRNAKWLTV---EMIQDGHQVSLLSGELTVEQRASIIQ 268
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTS------LPNYIHRIGRTARAGESG 504
RF+ + + T+V ARG+ V V +P Y+HRIGRT R G+ G
Sbjct: 269 RFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 328
Query: 505 AATIFLFREELKFVDELRRDTNVVIK--NQED 534
A + +EL + +++ N IK N ED
Sbjct: 329 LAFNMIEVDELPSLMKIQDHFNSSIKQLNAED 360
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 82.4 bits (202), Expect = 2e-15
Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 45/392 (11%)
Query: 156 MKFESLTPVQQRTIKPILT-TENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKA 214
M F + +Q+ + +L +++A++++GTGKT AF+ + + + +L +
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALEL----FPQC 56
Query: 215 VIVTPTRDLAIQIASEVKKLQQCNPSLK---SYRSLTLIGGTNLDKSLKDLHTLNPNIIV 271
+ + PT +LA+Q V+++ + ++ + R + GT++ K II+
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ----------III 106
Query: 272 GTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQI-GFQTELSLISRKLNEFNTQGEEHI 330
GTPG + D ++ + VLDEAD ++ GF I R L
Sbjct: 107 GTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRAL-------PSEC 159
Query: 331 RTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVAL 390
+ LLFSAT + +V A I+ + + + + + ++I Q V+ + + AL
Sbjct: 160 QMLLFSATFEDSVWHFAERIIPDPNVIKL----RKEELTLNNIRQYYVLCEHRKDKYQAL 215
Query: 391 IQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVD 450
S + + AI+F T + + + E + + G++ ++R +
Sbjct: 216 CNIYGSITIGQ----AIIFCQTRRNAKWLTV---EMIQDGHQVSLLSGELTVEQRASITQ 268
Query: 451 RFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTS------LPNYIHRIGRTARAGESG 504
RF+ + + T+V ARG+ V V +P Y+HRIGRT R G+ G
Sbjct: 269 RFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 328
Query: 505 AATIFLFREELKFVDELRRDTNVVIK--NQED 534
A + +EL + +++ N IK N ED
Sbjct: 329 LAFNMIEVDELPSLMKIQDHFNSSIKQLNAED 360
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 80.1 bits (196), Expect = 1e-14
Identities = 91/404 (22%), Positives = 175/404 (42%), Gaps = 44/404 (10%)
Query: 140 LEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQ 199
L+E LL + I FE + +Q+ + P TT DV +++ G+GKT+ L + Q
Sbjct: 3 LKEELL-----RGIYGFGFEKPSAIQKSAVAPC-TTGKDVTIQSQAGSGKTVISLIDILQ 56
Query: 200 HLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSL 259
+ ++ +++ P R +A + ++K L + N ++ + T +G ++
Sbjct: 57 GIDCEDAH----LQVILLAPQRGMAQRAHEQLKSLGR-NLNVNA----TCLGFDTTAEND 107
Query: 260 KDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL 319
K H +++GTP D L + + + + VLDEAD +L GF+ ++ + R +
Sbjct: 108 KISH-----VLMGTP---KDFLSNIPSDTSR-IKMFVLDEADEMLSKGFKDQIYEVFRSM 158
Query: 320 NEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVI 379
+ ++ +L SATM V ++ M + + K D + I Q +
Sbjct: 159 -------PQDVQVVLLSATMPSEVLDVTNRFMRDPIRILV----KKDELTLEGIRQFYIN 207
Query: 380 TKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGK 439
+ L +++ + +A++F T + V +E L ++ I + FHG
Sbjct: 208 VQKDEWKFNCLCDLLKTS----RETQALIFCNTRRRVTQLTEQL---MSIPIKVSCFHGN 260
Query: 440 IDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTAR 499
++ +R +V F N + V TD+ ARGM+ + V ++ NY+ R GR
Sbjct: 261 MEHNEREDMVKDFNSRNTRVLVTTDLMARGMNIRK-SLIINYDVSGNMENYMLRNGRQGN 319
Query: 500 AGESGAATIFLFREELKFVDELRRDTNVVIKNQ-EDYLNQDKEN 542
G G F ++ + ++ + I+ E +L EN
Sbjct: 320 FGSKGLPISFFTENDISDLKKIENHYSTRIEEMPESFLEYLDEN 363
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 79.3 bits (194), Expect = 2e-14
Identities = 83/370 (22%), Positives = 168/370 (44%), Gaps = 60/370 (16%)
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAI 225
QR + P + V ++TG+GKTL+++ P HL+ + + + +++ PTR+L
Sbjct: 83 QRFVIPYILAGEGVDVISETGSGKTLSYVLPHI-HLLESGDK-----RLLVIVPTRELVS 136
Query: 226 QIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP-NIIVGTPGRINDILDRV 284
Q+ +K + R + + G +++ + L P ++ + TPGR+ ++L+
Sbjct: 137 QVGQVFRKFSE-----GLLRIVEITGEVSIES--QRLQVSRPFDVAISTPGRLRELLE-- 187
Query: 285 GAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKL----------NEFNTQGEEHIRTLL 334
K ++ V+DEAD L+Q +++++ I ++ F G R L+
Sbjct: 188 -LKSIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPEVASFFSATPFEWSG--GTRILV 244
Query: 335 FSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSI 394
+ ++ +V+E F V+K E + + LV E +A +
Sbjct: 245 GNVSVGRDVEE------------FFMYVEK--KEKMQVLGEILV----SCEGWLAKNMGV 286
Query: 395 ESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRI-DIIKFHGKIDQKKRTKLVDRFK 453
+ L+ K K I+F +++ E+L KR ++ H + ++R +++
Sbjct: 287 DRNGLEVK--KIIVFCNSIR--------TCENLHKRFRQLLVLHSRRTMQERKAVIEAL- 335
Query: 454 KTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFRE 513
+ + + TD+G RG+ V+ V +P ++ Y+HR GRT R G A + RE
Sbjct: 336 EGERAVLIATDLGGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGRQ-RKGMALSMICRE 394
Query: 514 ELKFVDELRR 523
+ + + +L+R
Sbjct: 395 DREILPKLKR 404
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 74.3 bits (181), Expect = 6e-13
Identities = 88/359 (24%), Positives = 146/359 (40%), Gaps = 49/359 (13%)
Query: 215 VIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTP 274
VI+ PTR+L Q ++ S K R +TL G N+++ L+ L T +I+VGTP
Sbjct: 309 VILEPTRELVQQTFQNIQTFASVLDSPK-IRCVTLAAGENMNQILRTLET-GCDIVVGTP 366
Query: 275 GRINDILDRVGAKYFKDVDFKVLDEADTLL---------------------QIGFQTELS 313
R+ D++ G K++ F V+DE D L Q G + ++
Sbjct: 367 SRVFDLI-HTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQVI 425
Query: 314 LISRKLNEFNTQ--GEEHIRTLLF---------SATMDHNVQELAATI-------MNKKD 355
S L+ F + H+ + SA + H V + A+ M+++
Sbjct: 426 ACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQV 485
Query: 356 CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKF 415
L D V D + D+ + + + ++++I + + K AI+F T +
Sbjct: 486 HLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDK----AIVFCRTKQQ 541
Query: 416 VDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSV 475
D L ++ + HG ++R ++ FKK VC+DV ARG+ V
Sbjct: 542 CDHMEHFLQQN---NLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGV 598
Query: 476 EHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKNQED 534
V + +P Y+HRIGR RA G + + E K R V N +D
Sbjct: 599 PFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEEKAWYHKCRSRGVNCTNTKD 657
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 74.3 bits (181), Expect = 6e-13
Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 317 RKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDS---I 373
R++ + T+ +++I +AT+ N ++ A I+ +F D V + + H + +
Sbjct: 343 RRVRKIYTRSKQYI---FIAATLPVNGKKTAGGILKH---MFQDAVWVSGNFLHRNSPRL 396
Query: 374 DQKLVITKSFAESMV-ALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID 432
QK V + +S V ALI+++++ + ++F TV+ V+ ++ L ++ I
Sbjct: 397 KQKWV--EVTVDSQVDALIEAVKNNN-NTNTERTMVFANTVEAVEAVADILEKA---SIQ 450
Query: 433 IIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIH 492
++H +R ++ F++T G+FVCTD ARG+ P+V HV Q +S +++H
Sbjct: 451 CYRYHKNHKLDERANILADFRETG-GVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLH 509
Query: 493 RIGRTARAGESGAATIFLFREELKFVDELR 522
RIGRTARAG+ G T V+ +R
Sbjct: 510 RIGRTARAGQYGTVTSLYTEANRDLVEAIR 539
Score = 50.4 bits (119), Expect = 9e-06
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 145 LDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST 204
L NV A+ F+ + Q I IL+ + DV+ A+TG+GKT +LAP+ L +T
Sbjct: 87 LSDNVSIALRDSGFDRPSLTQAVCIPSILSGK-DVIVAAETGSGKTHGYLAPIIDQLTNT 145
Query: 205 KLQN----------PLAVKAVIVTPTRDLAIQIASEVKKL--QQCNPSLKSYRSLTLIGG 252
L + PL ++I+ P L Q+ V L + NP L R + G
Sbjct: 146 ALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLL---RVEAVCGS 202
Query: 253 TNLDKSLKDLHTLNPNIIVGTPGR-INDILDRVGAK--YFKDVDFKVLDEADTLLQIGFQ 309
L P+IIV TP +N+I + + + + V + V DEAD LL FQ
Sbjct: 203 QGWPDRL-------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQ 255
Query: 310 TEL 312
++
Sbjct: 256 NQI 258
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 72.8 bits (177), Expect = 2e-12
Identities = 99/417 (23%), Positives = 171/417 (40%), Gaps = 95/417 (22%)
Query: 162 TPVQQRTIKPILTTENDVVAK-----AKTGTGKTLAFLAPLFQHLISTKLQNP------- 209
+P+Q IK I D + A+TG+GKT+A+L PL +L +L+ P
Sbjct: 138 SPIQTVAIKRISKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETLR 197
Query: 210 --LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNP 267
+ ++++I+ PT +L Q+ V K + L S++ +L +++K+
Sbjct: 198 KNVLIRSIILVPTHELVDQVYETVSKTKTL-LGLNSFKWDKATSYRDLLENIKN----RI 252
Query: 268 NIIVGTPGRINDILD----RVGAKYFKDVDFKVLDEADTLLQIGFQTEL-SLISRKLN-- 320
+I+V TPG++ ++ K V F VLDEADTLL + E S I R N
Sbjct: 253 DILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNIN 312
Query: 321 -----------EFNTQGEEHIRTLL----------------------FSATMDHNVQELA 347
EFN + T++ S ++ LA
Sbjct: 313 HLIFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKIKALA 372
Query: 348 ATIMN----------KKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESE 397
T+ +K C+ KN E + ++ K F + + L +
Sbjct: 373 QTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVN------LLNKKFGHNAIGL---TGED 423
Query: 398 LLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNH 457
++++ K + FL + + SE +++S + + KF + ++ + K TN
Sbjct: 424 TFEERSEKIMPFLSPPRPL---SEVVAQSTSPPTSLKKF----EIPDSNIVIGKLKNTNS 476
Query: 458 G----------IFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESG 504
+ V TD+ ARG++F V +V VP + + IHR+GRTAR + G
Sbjct: 477 NGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGG 533
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 72.8 bits (177), Expect = 2e-12
Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 46/312 (14%)
Query: 136 IDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAF-L 194
+DS + +LL++ +H I A E + +QQR I P + V+ +A++GTGK F +
Sbjct: 76 VDSFDDMNLLESLLH-GIYAYGSEKPSAIQQRAILPCIRGYV-VIVQAQSGTGKMATFSI 133
Query: 195 APLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTN 254
+ L Q + K L K VI A C+ T IGGTN
Sbjct: 134 SILHQIELDVKATQALIQKVVIALGDHMDA-----------SCH---------TCIGGTN 173
Query: 255 LDKSLKDLHTLNPNIIVGTPGRINDILD--RVGAKYFKDVDFKVLDEADTLLQIGFQTEL 312
+ ++ L P+IIVGTPG + D+L+ + KY K VLD+ D +L GF+ ++
Sbjct: 174 VHAEVQKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIK---MFVLDKTDEMLSHGFKDQI 230
Query: 313 SLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDS 372
I ++LN NTQ +L SATM +V E+ M + + + K + +
Sbjct: 231 YGIFQELNS-NTQ------VVLPSATMPSDVLEVTKKFMREHIWILV----KKEELTLEG 279
Query: 373 IDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRID 432
I Q + + + L E+ + +A++FL T + D+ ++ + +
Sbjct: 280 ICQFYINMEREEWKLDTLGDLYETLTIA----QAVIFLNTRRKADWLTKKMH---AQDFT 332
Query: 433 IIKFHGKIDQKK 444
+ HG +DQK+
Sbjct: 333 VSAMHGDMDQKE 344
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 72.8 bits (177), Expect = 2e-12
Identities = 102/436 (23%), Positives = 182/436 (41%), Gaps = 52/436 (11%)
Query: 123 TTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAK 182
+TL P FH T +L +A++ E+ + ++ ++ TT + +
Sbjct: 24 STLKPSFFHSTSTRRALKSSPSSRIINLQAVA----ETSSEIESNSVTE--TTVPLTLRQ 77
Query: 183 AKTGTGKTLAFLAPLFQHLISTKLQNPL--AVKAVIVTPTRDLAIQIASEVKKLQ-QCNP 239
G+GKTL +L +F L NP +V+AVIV PTR+L +Q+ + L +
Sbjct: 78 ICQGSGKTLTYLLLIFS------LINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEI 131
Query: 240 SLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDE 299
+K + L+ G L + L P I+V T + +L++ + V V+DE
Sbjct: 132 DVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFR-IDSVRVLVVDE 190
Query: 300 ADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMD---HNVQELAATIMNKKD- 355
D L Q + + + L F++ + +T+ SA++ H V + K+D
Sbjct: 191 VDFLFYSSKQ--VGSVRKLLTSFSSCDKR--QTVFASASIPQHKHFVHDCIQQKWTKRDV 246
Query: 356 -------------CLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKK 402
CL V + H + L + +S A + +SE K
Sbjct: 247 VHVHVSAIMPMPLCLLHRFVMCEKTNKHQVL---LALLESDAPESAIIFVGEQSE----K 299
Query: 403 NFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVC 462
+ KA T ++F + SL +I+ G ++ R + ++ + V
Sbjct: 300 SKKAGNDPSTTLLMEFLKTSYKGSL----EILLLEGDMNFNSRAASLTEIRQGGGFLLVS 355
Query: 463 TDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIF--LFREELKFVDE 520
TD+ ARG+ P H++ +P ++ +Y+HR GR R S I L E +FV
Sbjct: 356 TDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFV-- 413
Query: 521 LRRDTNVVIKNQEDYL 536
L+R N ++ + E+ +
Sbjct: 414 LQRYENELMFSCEEMM 429
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 72.4 bits (176), Expect = 2e-12
Identities = 66/223 (29%), Positives = 106/223 (46%), Gaps = 20/223 (8%)
Query: 129 SFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTG 188
S H D LL+ LL +AI FE + VQ I P DV+ +AK+G G
Sbjct: 40 SIHSSGFRDFLLKPELL-----RAIVDCGFEHPSEVQHECI-PQAILGMDVLCQAKSGMG 93
Query: 189 KTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLT 248
KT F+ Q + Q V +++ TR+LA QI+ E ++ + PS+K
Sbjct: 94 KTAVFVLATLQQIEPVNGQ----VTVLVMCHTRELAFQISKEYERFSKYMPSVKVS---V 146
Query: 249 LIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGF 308
GG ++ K + L P+++VGTPGRI ++ R + K+V VLDE D +L+
Sbjct: 147 FFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV-RNRSFSLKNVKHFVLDECDKMLE--- 202
Query: 309 QTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIM 351
Q ++ R + E + ++FSAT+ +++ + M
Sbjct: 203 QLDM---RRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFM 242
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 72.0 bits (175), Expect = 3e-12
Identities = 84/357 (23%), Positives = 153/357 (42%), Gaps = 85/357 (23%)
Query: 150 HKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNP 209
++ + + +E TP+Q++TI P++ ++ +TG+GKTL +L P Q IS +
Sbjct: 19 YRLLRNILYEGPTPIQRKTI-PLILERRSLMGVGRTGSGKTLCYLIPAIQRAISGE---- 73
Query: 210 LAVKAVIVTPTRDLAIQIASEVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNI 269
K +++ PT++L IQ +K+L + ++++ K I
Sbjct: 74 ---KTLVIVPTKELVIQARRVLKRLAR-----------------GIEEAWK-------LI 106
Query: 270 IVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEH 329
+ TPG+I + D V+DE D +L+ + L + ++NE
Sbjct: 107 EICTPGKIEGM----------SADMLVVDEIDRILE---EPSLKSVFDRINE-----SLS 148
Query: 330 IRTLLFSATM-DHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMV 388
+ + FSAT+ DH +N K V + ++ ++++ S
Sbjct: 149 CQKVFFSATLPDHP--------LNMK-------VVEIETRINETVKHFFFYIPS------ 187
Query: 389 ALIQSIESELLQ--KKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRT 446
+S E+ LL+ K K I+F T V+ E L+++ + + +D + R
Sbjct: 188 ---ESKEAALLRILDKTRKTIVFAATKYAVELLLEILNKN---NFESRGIYSSMDDEARR 241
Query: 447 KLVDRFKKTNHGIFVCTDVGARGMHFPSVEHV--YQLCVPTSLPNYIHRIGRTARAG 501
F + I V TDV ARG+ P ++ V Y LC + ++HR+GR G
Sbjct: 242 ANFRDFNTSKFSILVVTDVAARGLDIPYLDTVVNYDLCDERT---FLHRVGRVRGMG 295
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 70.5 bits (171), Expect = 8e-12
Identities = 66/255 (25%), Positives = 106/255 (40%), Gaps = 74/255 (29%)
Query: 254 NLDKSLKDLHTLNPNIIVGTPGRINDILD--RVGAKYFKDVDFKVLDEADTLLQIGFQTE 311
N+ ++ L P+II+GTPGR++D+L+ + KY K VLDEAD +L F+ +
Sbjct: 47 NMCAKVQKLQMEAPHIIMGTPGRVSDMLNWRYLSPKYIK---MFVLDEADEMLSHRFKDQ 103
Query: 312 LSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHD 371
+ I + LN NTQ +L SAT+ +V E
Sbjct: 104 ICDIFQMLNS-NTQ------VVLLSATIPSDVLE-------------------------- 130
Query: 372 SIDQKLVITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRI 431
+TK F + ++ ++ E L K+F
Sbjct: 131 -------VTKKFMRDPIRIL--VKKEELTLKDFT-------------------------- 155
Query: 432 DIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYI 491
+ HG +DQK+R ++ ++ + + + TD+ RG+ + V PT+ NYI
Sbjct: 156 -VSAMHGDMDQKERDVVMREYRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNRENYI 214
Query: 492 HRIGRTARAGESGAA 506
HRIGR + G G A
Sbjct: 215 HRIGRGGQFGHKGVA 229
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 68.9 bits (167), Expect = 2e-11
Identities = 66/283 (23%), Positives = 128/283 (44%), Gaps = 40/283 (14%)
Query: 244 YRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF--KDVDFKVLDEAD 301
Y ++ +IGG + + L + I++ TPG + D+L+ +Y + VLDEAD
Sbjct: 361 YPTVAVIGGISREDWGFRL-LMGCEIVIATPGHLIDVLEN---RYLVLSCCTYVVLDEAD 416
Query: 302 TLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDT 361
++ +GF+ ++ I + + + +E + +++ A + K
Sbjct: 417 RMIDVGFEPDVQKILEHMPQSEARHDE-----------SEDPEKMLANFESGK------- 458
Query: 362 VDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNFKAI-LFLPTVKFVDFFS 420
+ H+ ++Q ++++S E L+ E+L++ AI +F+ K D +
Sbjct: 459 -----RKPHERVEQVFLMSES--EKRKKLL-----EILKQGFDPAITIFVNQKKGCDVLA 506
Query: 421 ETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQ 480
++L + + HG Q++R + K + V TDV G+ V V
Sbjct: 507 KSLEKM---GYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVN 563
Query: 481 LCVPTSLPNYIHRIGRTARAGESGAATIFLFREELKFVDELRR 523
+ ++ +YIHRIGR +AG+SG A FL +E+ EL++
Sbjct: 564 YDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAVFYELKQ 606
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 63.9 bits (154), Expect = 8e-10
Identities = 82/362 (22%), Positives = 148/362 (40%), Gaps = 77/362 (21%)
Query: 166 QRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAI 225
Q+ + P + +V+ +A TG+GKTL++ PL + + ++ I+ P + L
Sbjct: 52 QKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVE------MARGRSLFGAILVPGKPLVR 105
Query: 226 QIASEVKKLQQCNPSLKSYRSLTLIG----------------GTNLDKSLKDLHT----- 264
Q+ V++++ + L ++G G + K++ D
Sbjct: 106 QVYRVVREIK--------HEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAE 157
Query: 265 ---LNPNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQ---IG-FQTELSLISR 317
+ +++GTP +L + ++V V+DEAD L+ +G F + LS+I
Sbjct: 158 SLRASARVLIGTP---RSVLGLMSMSEIRNVTHLVIDEADLLINPETVGVFASILSVIEM 214
Query: 318 KLNEFNTQGEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKL 377
E I FSATM+ V E+ T+ K I V K ID +
Sbjct: 215 ----------EDIHISCFSATMNEYVSEVIETV---KSITKIRVVSKR------LIDHEF 255
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
V S ++L+Q I + ++F+ K + S L +S R D
Sbjct: 256 VFGTSRKIKHLSLLQIIADGI----ESPTLIFVKDEKTGEALSMLLGKSAVYRED----- 306
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
Q+ +++D F+ TD +RG+ F ++ V +P++ ++HRIGR
Sbjct: 307 ----QEGSGEVLDGFRLKKIWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRI 362
Query: 498 AR 499
R
Sbjct: 363 NR 364
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 62.4 bits (150), Expect = 2e-09
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 378 VITKSFAESMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFH 437
++ FA++M A+I+++ K + +LF T +T+S R+ +
Sbjct: 168 ILDVGFADTMNAIIENLP------KKRQTLLFSAT--------QTISVKDLARLSLKNTE 213
Query: 438 GKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
Q +R ++ + F + + +DV ARG+ FP+V Q P YIHR GRT
Sbjct: 214 YVWQQMRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRT 273
Query: 498 ARAGESGAATIFLFREELKFVDEL 521
AR E G A + L E V +L
Sbjct: 274 ARYKEDGEALLILLASEKAIVQQL 297
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 60.1 bits (144), Expect = 1e-08
Identities = 74/392 (18%), Positives = 164/392 (40%), Gaps = 43/392 (10%)
Query: 116 KSKSFNVTTLNPESFHEQVTIDSLLEESLLDANVHKAISAMKFESLTPVQQRTIKPILTT 175
K + +T+ N + E V E S +A + + + ++ TP+Q +T
Sbjct: 13 KRHNITLTSWNMRNLPEPVLS---FERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEG 69
Query: 176 ENDVVAKAKTGTGKTLAFLAP--LFQHLISTKLQNPLAVKAVIVTPTRDLAIQIASEVKK 233
+N V+ K GTGKTL +L P + H +Q+ +I+ R+ A+ + EV
Sbjct: 70 KNIVMISGK-GTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREV-- 126
Query: 234 LQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYFKDVD 293
L NP R+ L+G + + +++V + GR+ ++D K+ +++
Sbjct: 127 LYYTNP--LELRTHCLLGNSQWQGHAE------CDLLVASAGRLLQMID--NKKHVVELE 176
Query: 294 ---FKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATMDHNVQELAATI 350
+ VLD D ++ +G + + + +L H + ++ S + N++ +A
Sbjct: 177 RCTYLVLDNIDRMIDVGLEGNICRLLCRL-------RPHAQLIVSSTSWSSNLKRMANKF 229
Query: 351 MNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESELLQKKNF-----K 405
+ + + + ++ N +I Q++ + ++ ++ + EL + K
Sbjct: 230 LGQYTAIRVGEIN-NIGVRLQNIRQRVEVVNGLSK-----VERLMKELTAIYDTSDIPGK 283
Query: 406 AILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDV 465
++++ K V E L + + + HG ++ ++ F + I V T +
Sbjct: 284 VVIYVKRQKVV----EELVDLIRNCVPCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQM 339
Query: 466 GARGMHFPSVEHVYQLCVPTSLPNYIHRIGRT 497
+ + P + +V P ++ Y+ R+ RT
Sbjct: 340 TSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT 371
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 59.7 bits (143), Expect = 1e-08
Identities = 38/101 (37%), Positives = 56/101 (54%), Gaps = 8/101 (7%)
Query: 268 NIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGE 327
NIIV T GR+ D + +K++ V+DEAD +L +GF+ EL I + L
Sbjct: 18 NIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLT------ 71
Query: 328 EHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
H +T+LFSAT V++L A I KK+ L++ D N +E
Sbjct: 72 -HRQTMLFSATQTQKVEDL-ARISLKKEPLYVGDDDDNANE 110
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 55.5 bits (132), Expect = 3e-07
Identities = 60/244 (24%), Positives = 110/244 (44%), Gaps = 19/244 (7%)
Query: 268 NIIVGTPGRINDILDR--VGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQ 325
+++V TPG + D+++R +G + K + VLDEAD +L +GF ++ LI + + +
Sbjct: 240 HLLVATPGGLVDLMERGKIGLDFCK---YLVLDEADRMLDMGFGPQIHLILEQ-DTMPLK 295
Query: 326 GEEHIRTLLFSATMDHNVQELAATIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAE 385
G HI ++FSAT + +Q LA +++ L + V ++I Q++V + +
Sbjct: 296 GIHHI--MMFSATFPNEIQMLARDFLDEYIFLAVGRV----GSTSETITQEVVWVEE-PD 348
Query: 386 SMVALIQSIESELLQKKNFKAILFLPTVKFVDFFSETLSESLTKRIDIIKFHGKIDQKKR 445
L+ + + K+ ++F+ T K D L + I + D++
Sbjct: 349 KRSFLLDLLNA---PGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDREGG 405
Query: 446 TKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGA 505
V + N + C + R HF E + +P+ + Y+ IG T G G
Sbjct: 406 PSSVLLGENPNSSGYSCGSMKTR--HF-KCETCFNFDLPSDIEEYVPCIGCTGCVGIQGL 462
Query: 506 ATIF 509
AT F
Sbjct: 463 ATSF 466
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 51.2 bits (121), Expect = 5e-06
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 275 GRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLL 334
GR+ D + +K++ V+DEAD +L +GF+ EL I + L H +T+L
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-------LTHRQTML 84
Query: 335 FSATMDHNVQELAATIMNKKDCLFIDTVDKNDSE 368
FSAT V++L A I KK+ L++ D N +E
Sbjct: 85 FSATQTQKVEDL-ARISLKKEPLYVGDDDDNANE 117
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,060,032
Number of Sequences: 60738
Number of extensions: 1410205
Number of successful extensions: 4989
Number of sequences better than 1.0e-05: 233
Number of HSP's better than 0.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 3919
Number of HSP's gapped (non-prelim): 297
length of query: 685
length of database: 30,389,216
effective HSP length: 113
effective length of query: 572
effective length of database: 23,525,822
effective search space: 13456770184
effective search space used: 13456770184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)