ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4703 suspect: LH R KOG4711 General function prediction only Predicted membrane protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4703 1606789 1609923 1045
(1045 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL231c [R] KOG4711 Predicted membrane protein 890 0.0
>YDL231c [R] KOG4711 Predicted membrane protein
Length = 1125
Score = 890 bits (2301), Expect = 0.0
Identities = 476/1080 (44%), Positives = 660/1080 (61%), Gaps = 69/1080 (6%)
Query: 29 STSHSRINLSQMKLNKLLEGKKWENLESFGLEELRNGFFDPVYTGYERLQPTDPTDVDHF 88
S S +LSQM+L L++ K WE +E FGLEELR+GFFD +T + + +D+D
Sbjct: 48 SPQQSVASLSQMRLENLVKDKHWEEVEDFGLEELRDGFFDAAFTKPDSKARSPNSDIDDD 107
Query: 89 D-ETRKPL---FPHID--------------PKGTRKYWKHIVKYWIAIFVANILCLIRPA 130
+ RK L F + P+ RK I K++IA F+A ++C+IRP+
Sbjct: 108 NGAARKKLQSGFTKLSEYVWTAIYRPIIHFPRDIRKNGVSIFKFFIAYFIAIVICVIRPS 167
Query: 131 GNWFGGEYRYFLPLAVLIHHPSRTVGVQLELSLQSILGAAIGMGYSSLIWFVSTATKPAA 190
G W G E+RYFLP+AVLIHHP R +GVQLE+++ SI+GA+ G+G+S+L W++STATKP A
Sbjct: 168 GRWIGHEFRYFLPIAVLIHHPVRNIGVQLEMTISSIIGASFGLGWSALAWYISTATKPTA 227
Query: 191 TNXXXXXXXXXXXXXXXTHWLRTTYQRLFYFSTSFGIAALFFCGSSLVFNKSDLDWKLYW 250
WLR+ Y+R FYF+TSF I+ +F L +K DL W+++W
Sbjct: 228 NYQGGILFQSLTMALLFAIWLRSVYRRFFYFTTSFSISIIFTHTVRLASSKFDLKWQIFW 287
Query: 251 DFGISYLFGILLALLVCCTVFPHTCHFTAKVTLISTLEEMKSFLCNVIDPKHCEDVTSLR 310
DFGISYLFG+LL+LLVC V PH+ + L+ K+FL ++D + + +
Sbjct: 288 DFGISYLFGLLLSLLVCVCVSPHSGNAELMEHYNKCLQTTKTFLMALVDTELIKSKEQIY 347
Query: 311 ETQNKMSEAVNIYLSEGLREFSNQTTFTVFDDECLKELRNVITFTASPLRVLPTNNGLLT 370
Q KM + +NI LS+G R+F NQ T + FD + LK LRN +T + LRVLP +
Sbjct: 348 LAQVKMVKTLNIDLSQGFRDFVNQLTISRFDLQSLKSLRNSLTAMETSLRVLPIAPKIFN 407
Query: 371 KAELEQFFKDGTNTEVPSSQ-AKSANSPMIFSGM----QTPQASSGI-PNLGIDFNTAIY 424
EL++ +++ S+ +K A++ SG+ TP A I P L IY
Sbjct: 408 DDELKKMYEELEKYRSDSATLSKEASASPQSSGIPTRENTPSAFKPIGPGL---LKNEIY 464
Query: 425 NNILRSFFAKPIYQLIREMLLVIESIQSYIELYSNFSVNKSEVEQSMXXXXXXXXXXXXX 484
N L++ F+K I+ LI EM+ V+E++ ++ Y + + K+ +++ +
Sbjct: 465 INALKASFSKSIFNLILEMIFVLENLSRVLKKYESPN-QKNNLDECVKILSHSHSKLKRK 523
Query: 485 IYRLDVAYKDFTKTNFFCKDLLQDPNSTDAFLFLRYVRQSAKSMIAVAERTIDLAKNLKW 544
IY+LDV Y+DF ++FF ++LL D S D FLFLRY+R SA+ ++ V L +N+ W
Sbjct: 524 IYKLDVCYRDFVNSSFFSQELLNDEESVDIFLFLRYLRNSARQLVTVIHDCQVLGENIHW 583
Query: 545 RICLPNYPLQRSLTRLPRQCALDQGANAVLHYFETKRDVDKAFENIYNSYTSRHKYN--- 601
RI LP+YPL R+LTRLP+QC LD+GA VLHYFE KRDVD+ FE +YN+YTSRHKYN
Sbjct: 584 RIALPSYPLSRALTRLPKQCVLDEGAGNVLHYFEAKRDVDEIFERVYNTYTSRHKYNKGE 643
Query: 602 -----------DVKGKKLEAYT---RAIDHNDFNFHTTTNPIRYKIWQLTTKITGVENKS 647
D K + + +T RAIDHNDFNFHTT NP R+K+W+L+ ++G E K
Sbjct: 644 EEALRLDSQGGDEKSQNRKNHTISIRAIDHNDFNFHTTQNPWRFKLWKLSRILSGDECKW 703
Query: 648 ALKVAFMLTFLLLPSWLKQSYTWYQYYHCWWGATIFFILTNSRNVATWKGILRRFMYGFF 707
LK+ F + FL LP+WL +SY WYQ +HCWW F++L + R W ++RR + G
Sbjct: 704 TLKITFCMIFLCLPTWLPESYHWYQEFHCWWAPLTFYLLAHRRYSGNWALVMRRLICGIV 763
Query: 708 GIVWAFCACVSRR-NNPFVIATFGGILFAPLAVDFFVNKNTKSSLTASTCFIIITLGIYG 766
GI W + A SR +P+V+ TF G++ P +++F V +NTKSS TA CF II L Y
Sbjct: 764 GIFWGWAANQSRHFGSPYVVCTFAGLIVVPFSINFLVYRNTKSSFTALMCFTIIALEPYS 823
Query: 767 KADK-LPMGTSDIWKNTWTTGVSLLIGVLLSIPTTWVLWSFKTRRELRLAMSSLLSHISQ 825
K ++ + T+ IWK+TW TG++L+IG+L+SIP W++W F+ R ELR +MSSLL+H+ Q
Sbjct: 824 KPNRHYNLTTAGIWKSTWVTGLALIIGILVSIPINWIVWPFRARTELRDSMSSLLAHLGQ 883
Query: 826 SYQSVTDRYLYRDIDDDPTDLSLRLSNIREVRLYQSIYAAASLLDRAKQEPNYISNFKPH 885
SYQ+V DRYLYRD DD PTDL+ S+IREVRL QS+ A LL +A+ EP ISNF P
Sbjct: 884 SYQTVADRYLYRDADDAPTDLTFAFSHIREVRLTQSLEAIRELLKKARHEPIIISNFNPE 943
Query: 886 LYEELINRCRLLLEKVIEARISGQYFQVWENDADEDITHAXXXXXXXXXXXXIFVFYILS 945
Y LIN C+ LL K+IEARISG +F++W+ D D + T A IFVFYILS
Sbjct: 944 KYASLINSCQFLLSKIIEARISGAFFEIWDQDFDIETTRALLSLRRDSVSSVIFVFYILS 1003
Query: 946 NCFRSKNKIPKYLPNPILSRKKLYDFINKFENM--------------------RQLRQRN 985
NCFRSKNKIP+YLPNPI+SRKKLY FI KF M +++ Q+
Sbjct: 1004 NCFRSKNKIPRYLPNPIMSRKKLYHFIKKFSEMKDQSHSNLNSGGNSMEKNLFKKIYQQK 1063
Query: 986 APVLPRKPLLKSDIDISKDI--EKTHWTEVHGMAFARAYTDFTLHLDRVIKLAREILGEE 1043
A ++ L + S +I EK HWTEVHG+AFARA+TD + L +V A++ILGEE
Sbjct: 1064 ASSSGQQQLPLPSVANSSEIDSEKMHWTEVHGIAFARAFTDISEALFQVESCAKDILGEE 1123
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,621,931
Number of Sequences: 60738
Number of extensions: 2534085
Number of successful extensions: 6093
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6080
Number of HSP's gapped (non-prelim): 1
length of query: 1045
length of database: 30,389,216
effective HSP length: 117
effective length of query: 928
effective length of database: 23,282,870
effective search space: 21606503360
effective search space used: 21606503360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)