ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4804 good K KOG2424 Transcription Protein involved in transcription start site selection
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4804 1645897 1645277 -207
(207 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL222w [K] KOG2424 Protein involved in transcription start site... 302 2e-82
SPAC3G9.04 [K] KOG2424 Protein involved in transcription start s... 187 9e-48
At1g73820 [K] KOG2424 Protein involved in transcription start si... 149 2e-36
Hs7661832 [K] KOG2424 Protein involved in transcription start si... 145 4e-35
7293626 [K] KOG2424 Protein involved in transcription start site... 140 1e-33
Hs18603809 [K] KOG2424 Protein involved in transcription start s... 127 8e-30
Hs20557629 [K] KOG2424 Protein involved in transcription start s... 127 1e-29
CE28665 [K] KOG2424 Protein involved in transcription start site... 127 1e-29
Hs20557627 [K] KOG2424 Protein involved in transcription start s... 127 1e-29
Hs22061787 [K] KOG2424 Protein involved in transcription start s... 126 2e-29
Hs22061781 [K] KOG2424 Protein involved in transcription start s... 126 2e-29
Hs17447926 [K] KOG2424 Protein involved in transcription start s... 126 2e-29
Hs22061775 [K] KOG2424 Protein involved in transcription start s... 124 9e-29
Hs22061790 [K] KOG2424 Protein involved in transcription start s... 123 2e-28
ECU06g0840 [K] KOG2424 Protein involved in transcription start s... 120 1e-27
>YNL222w [K] KOG2424 Protein involved in transcription start site selection
Length = 206
Score = 302 bits (773), Expect = 2e-82
Identities = 143/204 (70%), Positives = 163/204 (79%)
Query: 4 SMRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGT 63
S RNS LKFCTVCASNNNRSMESH+VL+EAGY+VSSYGTGSAVRLPGLSIDKPNVYSFGT
Sbjct: 3 SHRNSNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGT 62
Query: 64 PYDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSV 123
PY+DIYNDL+SQS DRYK NG+L+MLDRNR+LKKAPEKW + KVFDFVFTCEERCFD+V
Sbjct: 63 PYNDIYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAV 122
Query: 124 CEDLMNRGGQLNLXXXXXXXXXXXXXXXXXXGGRAILRLADMLRDKVFECEKNGTQFEDF 183
CEDLMNRGG+LN G +AIL LADML DK+ +CEK+ FED
Sbjct: 123 CEDLMNRGGKLNKIVHVINVDIKDDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDC 182
Query: 184 IMDVFTEWQEKYPKLPLTYSAAYY 207
IMD+ TEWQ + +LP Y+ +YY
Sbjct: 183 IMDILTEWQSSHSQLPSLYAPSYY 206
>SPAC3G9.04 [K] KOG2424 Protein involved in transcription start site selection
Length = 197
Score = 187 bits (475), Expect = 9e-48
Identities = 89/200 (44%), Positives = 124/200 (61%), Gaps = 7/200 (3%)
Query: 8 SGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDD 67
+ L+ +CASN NRSME+H VL+ AGY V S+GTGSAVRLPG SIDKPN+Y FG PYD+
Sbjct: 5 TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64
Query: 68 IYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVCEDL 127
IY +L +Q Y NG+L+MLDRNR++K+AP +W D +++ V TCEERC+D++CEDL
Sbjct: 65 IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124
Query: 128 MNRGGQLNLXXXXXXXXXXXXXXXXXXGGRAILRLADMLRDKVFECEKNGTQFEDFIMDV 187
RG LN GG+AIL L + L + + E+ +
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEA-------QDKLEELFPSI 177
Query: 188 FTEWQEKYPKLPLTYSAAYY 207
++Q +PKLP+ Y+ ++
Sbjct: 178 MADFQSNHPKLPVLYTIHFF 197
>At1g73820 [K] KOG2424 Protein involved in transcription start site selection
Length = 193
Score = 149 bits (377), Expect = 2e-36
Identities = 85/199 (42%), Positives = 115/199 (57%), Gaps = 11/199 (5%)
Query: 11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYN 70
++ VC+SN NRSME+H +L+ G DV+SYGTGS V+LPG S+ +PNVY FGTPY +++
Sbjct: 4 RYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQMFD 63
Query: 71 DLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHD--GRKVFDFVFTCEERCFDSVCEDLM 128
+L + + YK+NG+L+M+ RN +K AP++W D G VFD V T EE+ FDSV EDL
Sbjct: 64 ELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLN 123
Query: 129 NRGGQLNLXXXXXXXXXXXXXXXXXXGGRAILRLADMLRDKVFECEKNGTQFEDFIMDVF 188
NR L GGR L L E E N T +ED I D+
Sbjct: 124 NREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQ-------EIEGNET-WEDTIDDIV 175
Query: 189 TEWQEKYPKLPLTYSAAYY 207
+ EK + L YS ++Y
Sbjct: 176 AGF-EKQHRRKLVYSISFY 193
>Hs7661832 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 145 bits (366), Expect = 4e-35
Identities = 64/126 (50%), Positives = 92/126 (72%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC+SN NRSME+H +L + G+ V S+GTG+ V+LPG + DKPNVY F T
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
YD +YNDL+ + ++ Y QNG+L MLDRN+++K PE++ + + +FD + TCEER +D V
Sbjct: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
Query: 125 EDLMNR 130
EDL +R
Sbjct: 121 EDLNSR 126
>7293626 [K] KOG2424 Protein involved in transcription start site selection
Length = 195
Score = 140 bits (353), Expect = 1e-33
Identities = 64/116 (55%), Positives = 85/116 (73%)
Query: 8 SGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDD 67
S L VC+SN NRSME+H L + G++V SYGTG V+LPG++ DKPNVY FGT Y+D
Sbjct: 5 SKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYED 64
Query: 68 IYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSV 123
IY DL S+ ++ Y QNG+L MLDRNR++KK PE++ D ++ FD + T EER +D V
Sbjct: 65 IYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLV 120
>Hs18603809 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 127 bits (320), Expect = 8e-30
Identities = 60/129 (46%), Positives = 84/129 (64%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 1 MLSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y ++YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKEMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>Hs20557629 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 127 bits (319), Expect = 1e-29
Identities = 60/129 (46%), Positives = 84/129 (64%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 1 MLSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y ++YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKEMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>CE28665 [K] KOG2424 Protein involved in transcription start site selection
Length = 546
Score = 127 bits (319), Expect = 1e-29
Identities = 69/198 (34%), Positives = 107/198 (53%), Gaps = 9/198 (4%)
Query: 7 NSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFG-TPY 65
+S L+F C+SN NRSME+H +L++ G+++ SYG+G+ V++PG ++DKPN Y FG T Y
Sbjct: 42 SSKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTY 101
Query: 66 DDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVCE 125
+DIY DL ++ Y QNG+L M+DRNR++K P+++ + FD V EER FD V +
Sbjct: 102 EDIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVD 161
Query: 126 DLMNRGGQLNLXXXXXXXXXXXXXXXXXXGGRAILRLADMLRDKVFECEKNGTQFEDFIM 185
L G+ G + L + L + FE+ I
Sbjct: 162 FLNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADLCEKL--------ERSEDFEEDID 213
Query: 186 DVFTEWQEKYPKLPLTYS 203
+ T+ +E PK L ++
Sbjct: 214 QIITDLEENNPKRNLLHT 231
>Hs20557627 [K] KOG2424 Protein involved in transcription start site selection
Length = 304
Score = 127 bits (318), Expect = 1e-29
Identities = 60/129 (46%), Positives = 83/129 (63%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 111 MLSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 170
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y +YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 171 YKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVV 230
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 231 EDLCSREQQ 239
>Hs22061787 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 126 bits (317), Expect = 2e-29
Identities = 60/129 (46%), Positives = 83/129 (63%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 1 MLSSPLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y +YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>Hs22061781 [K] KOG2424 Protein involved in transcription start site selection
Length = 166
Score = 126 bits (317), Expect = 2e-29
Identities = 60/129 (46%), Positives = 83/129 (63%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 1 MLSSPLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y +YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>Hs17447926 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 126 bits (317), Expect = 2e-29
Identities = 60/129 (46%), Positives = 83/129 (63%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG + P VY F T
Sbjct: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y ++YNDL+ + + Y NG+L +L RN ++K PE++ + + FD +FTCEER +D+V
Sbjct: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>Hs22061775 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 124 bits (311), Expect = 9e-29
Identities = 59/129 (45%), Positives = 83/129 (63%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S+GT S VRLPG ++P VY F T
Sbjct: 1 MLSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y ++YNDL+ + + Y +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKEMYNDLLRKDRECYTRNGILHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>Hs22061790 [K] KOG2424 Protein involved in transcription start site selection
Length = 194
Score = 123 bits (308), Expect = 2e-28
Identities = 59/129 (45%), Positives = 82/129 (62%)
Query: 5 MRNSGLKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTP 64
M +S L+ VC SN NRSME+H +L G V S T S VRLPG ++P VY F T
Sbjct: 1 MLSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSPATESHVRLPGPRPNRPVVYDFATT 60
Query: 65 YDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVC 124
Y ++YNDL+ + +RY +NG+L +L RN ++K PE++ + FD +FTCEE +D+V
Sbjct: 61 YKEMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVV 120
Query: 125 EDLMNRGGQ 133
EDL +R Q
Sbjct: 121 EDLCSREQQ 129
>ECU06g0840 [K] KOG2424 Protein involved in transcription start site selection
Length = 193
Score = 120 bits (302), Expect = 1e-27
Identities = 53/116 (45%), Positives = 78/116 (66%)
Query: 10 LKFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIY 69
+K CA N NRSM++H +L + G V S+GT ++LPG ++DKPNVY+FG Y IY
Sbjct: 4 MKLAVTCAMNQNRSMQTHDLLAKKGIPVKSFGTNPVIKLPGETMDKPNVYNFGVTYQQIY 63
Query: 70 NDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGRKVFDFVFTCEERCFDSVCE 125
+DL ++ED Y+++G+L +L+RN +K+ PE + + FD V TCEER F S+ E
Sbjct: 64 DDLCMKNEDHYRESGILYLLERNMGVKERPENFFQRSEDFDLVITCEERVFTSIFE 119
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,813,840
Number of Sequences: 60738
Number of extensions: 525719
Number of successful extensions: 1285
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 15
length of query: 207
length of database: 30,389,216
effective HSP length: 101
effective length of query: 106
effective length of database: 24,254,678
effective search space: 2570995868
effective search space used: 2570995868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)