ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV4837   suspect: LH   K     KOG2821  Transcription                                                  RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV4837 1657122  1658063 314  
         (314 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL230c [K] KOG2821 RNA polymerase II transcription elongation f...   161   1e-39

>YNL230c [K] KOG2821 RNA polymerase II transcription elongation factor
           Elongin/SIII subunit elongin A
          Length = 379

 Score =  161 bits (407), Expect = 1e-39
 Identities = 100/301 (33%), Positives = 172/301 (56%), Gaps = 23/301 (7%)

Query: 7   TLEEICVITLLRHHTLIEDISYIPYRLIKSVLSKLKVDQLTKLEQTNPLIIFEDDEIWCD 66
           +L+ +C I+L+R+H+ I+ +S +PY L+K +L K+K+ QL KLE++N L+IF+DDE+W +
Sbjct: 3   SLQTLCEISLMRNHSNIQSVSNVPYHLLKRILQKVKIPQLLKLEKSNVLLIFDDDELWLE 62

Query: 67  LIRRDVDPTFSYQYTNKKNEILQYFKRVITNYTGTSTYKNIDTETLKNFVRPIVTKNDR- 125
            +R+D       Q+ +K++ I +Y+   +        + N D   LK+ VR  V K+ R 
Sbjct: 63  FLRQDFPTNVHEQFVSKRDIICKYYFDFVKENDIELYHSNQD--LLKSCVRQSVVKDIRN 120

Query: 126 GLYRVPCRLVYEKMREEILEKDKRIAAKVRETTKRIQQEKNKIQITAMVEPV------SG 179
             YR+P R++Y K ++E+ +K +  A ++R   +++QQE+ K Q   +   V      + 
Sbjct: 121 NKYRIPYRMLYSKYQQEVEKKQEESAERLRLEMQKLQQEREKKQTIVVDHTVYFKKRNTK 180

Query: 180 VSSRLRNKFLESKSKVFVDSLRESQKRRQHFKKNIVNIEKRVVERLAFGGQAGVSPSSTR 239
            ++RL N   E  S++++ SL++ + R +HFK    NI KR  +R+AFGGQAG   SS +
Sbjct: 181 KTTRLHN---EPHSQLYMKSLKDHESRLKHFKDGGFNIAKRHAQRVAFGGQAGGQSSSPK 237

Query: 240 CNDVTDNVRPQPVSIPQKENQSASAEADKKTTMIAQHSLPQKRPIEDPP----KRKKSRL 295
              +  +++P+PV +     Q  +  A+KK   + Q   P K+   + P     RKK  L
Sbjct: 238 KGPL--SIKPEPVKV---NRQMDNVTAEKKD--VTQPITPVKKRRSESPSIFLNRKKPAL 290

Query: 296 F 296
           F
Sbjct: 291 F 291


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,811,809
Number of Sequences: 60738
Number of extensions: 755393
Number of successful extensions: 3214
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3211
Number of HSP's gapped (non-prelim): 1
length of query: 314
length of database: 30,389,216
effective HSP length: 106
effective length of query: 208
effective length of database: 23,950,988
effective search space: 4981805504
effective search space used: 4981805504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)