ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV4883 good Y KOG2439 Nuclear structure Nuclear architecture related protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV4883 1675407 1676813 469
(469 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL240c [Y] KOG2439 Nuclear architecture related protein 434 e-121
SPCC1450.10c [Y] KOG2439 Nuclear architecture related protein 224 2e-58
CE24460_2 [Y] KOG2439 Nuclear architecture related protein 198 2e-50
Hs11968051 [Y] KOG2439 Nuclear architecture related protein 184 2e-46
Hs6912524 [Y] KOG2439 Nuclear architecture related protein 123 5e-28
Hs14165461 [Y] KOG2439 Nuclear architecture related protein 103 6e-22
ECU05g0970 [Y] KOG2439 Nuclear architecture related protein 103 6e-22
7289425 [Y] KOG2439 Nuclear architecture related protein 83 8e-16
At4g16440_2 [Y] KOG2439 Nuclear architecture related protein 69 1e-11
>YNL240c [Y] KOG2439 Nuclear architecture related protein
Length = 491
Score = 434 bits (1116), Expect = e-121
Identities = 235/492 (47%), Positives = 316/492 (63%), Gaps = 24/492 (4%)
Query: 1 MSALLRDADLNDFISPGLACVKPAQPQKVEK---KPSFEVEVGIESSEPEKVSISLQDCL 57
MSALL ++DLNDFISP LACVKP Q +K + E EV E + EKVSI+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 58 ACAGCITSSEEILLSKQSHKVFLEKWSELEELDERSLAVSISPQCRLSLADYYSMCLADL 117
AC+GCITSSEEILLS QSH VFL+ W +L + ++ L VS+SPQCRLSLA YY + L
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 118 DRCFQNFMKTKFNAKYVVGTQFGRSISISR------INATLKDRVPENEGPLLCSVCPGF 171
D C NF + F KY+VGT+ GR ISIS+ + K+ + PLL +VCPGF
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRKPLLSAVCPGF 180
Query: 172 VLYAEKTKPELIPHMLDVKSPQQITGNLLKQ-------ADPTCYHLSIMPCFDKKLEASR 224
++Y EKTKP+L+P +L+VKSPQQITG+L++ A + YHLS+MPCFDKKLEASR
Sbjct: 181 LIYTEKTKPQLVPMLLNVKSPQQITGSLIRATFESLAIARESFYHLSLMPCFDKKLEASR 240
Query: 225 -EECEKEVDCVITPKEFVAMLGDLSIDFKSYMTEYDS-SKELCPSGWDYKLHWLSNEGSS 282
E + +DCVITP+E V ML +L++DFKS++TE S L P GWD ++HW SN G +
Sbjct: 241 PESLDDGIDCVITPREIVTMLQELNLDFKSFLTEDTSLYGRLSPPGWDPRVHWASNLGGT 300
Query: 283 SGGYAYQYLLSLQSSNPESDIITIEGKNSDVTEYRLVSKSKGVIASSSEVYGFRNIQNLV 342
GGYAYQY+ ++Q +P S +I +EG+NSD+ EYRL+ + +IA++SE+ GFRNIQNLV
Sbjct: 301 CGGYAYQYVTAVQRLHPGSQMIVLEGRNSDIVEYRLLHDDR-IIAAASELSGFRNIQNLV 359
Query: 343 RKL-SQSASXXXXXXXXXXXXQSVLKSGETSEKTTKVLTADPAKTDFVEVMACPSGCING 401
RKL S S S ++ K+ TADP +D++EV ACP C+NG
Sbjct: 360 RKLTSGSGSERKRNITALRKRRTGPKANSREMAAATAATADPYHSDYIEVNACPGACMNG 419
Query: 402 GGLLNEEKNANRRKQLAQDLSLAY----TKVHSVNIPDIVHAYDDKSNDFKYNLRVIEPS 457
GGLLN E+N+ +RKQL Q L+ + V + + + + +Y ++ +
Sbjct: 420 GGLLNGEQNSLKRKQLVQTLNKRHGEELAMVDPLTLGPKLEEAAARPLSLEYVFAPVKQA 479
Query: 458 TSSDVVAVGNTW 469
D+V+VG+TW
Sbjct: 480 VEKDLVSVGSTW 491
>SPCC1450.10c [Y] KOG2439 Nuclear architecture related protein
Length = 538
Score = 224 bits (571), Expect = 2e-58
Identities = 162/471 (34%), Positives = 230/471 (48%), Gaps = 88/471 (18%)
Query: 9 DLNDFISPGLACVKPAQPQKVEKKPSFEVEVGI---------ESSEPEKVSISLQDCLAC 59
DLNDF+SPG C+KPAQ +K E K ++ E+SE SISL DCLAC
Sbjct: 8 DLNDFLSPGAVCIKPAQVKKQESKNDIRIDGDAYYEVTKDTGETSELGIASISLNDCLAC 67
Query: 60 AGCITSSEEILLSKQSHKVFLEKWSELEELDERSLAVSISPQCRLSLADYYSMCLADLDR 119
+GCITS+E +L++ QS++ L+ + + L VS+SPQ R +LA YY + L ++
Sbjct: 68 SGCITSAETVLVNLQSYQEVLKHLESRKS--QEILYVSLSPQVRANLAAYYGLSLQEIQA 125
Query: 120 CFQNFMKTKFNAKYVVGTQFGRSISISRI-----NATLKDRVPENEG------------- 161
+ K ++ T R I + + N+ L+ R +N+
Sbjct: 126 VLEMVFIGKLGFHAILDTNASREIVLQQCAQEFCNSWLQSRAHKNQNQVTNSVVNEHPLI 185
Query: 162 --------------------------PLLCSVCPGFVLYAEKTKPELIPHMLDVKSPQQI 195
P+L S CPG++ Y EKT LIP++ V+SPQQ
Sbjct: 186 PHSTSQISGVHSNTSSNSGINENAVLPILSSSCPGWICYVEKTHSNLIPNLSRVRSPQQA 245
Query: 196 TGNLLK--------QADPTCYHLSIMPCFDKKLEASREECE----KEVDCVITPKEFVAM 243
G +LK +HLS+MPCFDKKLEASR+E ++VD V+TPKE V M
Sbjct: 246 CGRILKDWAVQQFSMQRNDVWHLSLMPCFDKKLEASRDEFSENGVRDVDSVLTPKELVEM 305
Query: 244 LGDLSID---FKSYMTEYDSSKELCPSGWDYKLHWLSNEGSSSGGYAYQYLLS-----LQ 295
L ID + S + P W ++ + GSSSGGY Y+LS L
Sbjct: 306 FKFLRIDPIELTKNPIPFQQSTDAIPF-WYPRITYEEQIGSSSGGY-MGYVLSYAAKMLF 363
Query: 296 SSNPESDIITIEGKNSDVTEYRL-VSKSKGVIASSSEVYGFRNIQNLVRKLSQSASXXXX 354
+ +++ KN D+TEY L ++ + S + YGFRNIQNLVR++ ++S
Sbjct: 364 GIDDVGPYVSMNNKNGDLTEYTLRHPETNEQLISMATCYGFRNIQNLVRRVHGNSS---- 419
Query: 355 XXXXXXXXQSVLKSGETSEKTTKVLTADPAKTDFVEVMACPSGCINGGGLL 405
+ +LK S T +P++ D+VEVMACP GCINGGG L
Sbjct: 420 ----VRKGRVLLKKRVRSNAQNP--TEEPSRYDYVEVMACPGGCINGGGQL 464
>CE24460_2 [Y] KOG2439 Nuclear architecture related protein
Length = 454
Score = 198 bits (503), Expect = 2e-50
Identities = 146/442 (33%), Positives = 225/442 (50%), Gaps = 71/442 (16%)
Query: 2 SALLRDADLNDFISPGLACVKPAQPQKVEKKPSFEVEVGIESSEPE-----------KVS 50
S ++R ++++DFI+P L C+ P + + VEKK E +V I + +P+ V
Sbjct: 4 SGVVRLSNVSDFIAPNLDCIIPLETRTVEKKKE-ESQVNIRTKKPKDKESSKTEEKKSVK 62
Query: 51 ISLQDCLACAGCITSSEEILLSKQSHKVFLEKWSELEELDERSLAVSISPQCRLSLADYY 110
ISL DCLAC+GCITS+E +L+ +QS F + ++ + + V++SPQ S+A
Sbjct: 63 ISLADCLACSGCITSAETVLVEEQS---FGRVYEGIQ--NSKLSVVTVSPQAITSIAVKI 117
Query: 111 SMCLADLDRCFQNFMKTKFNAKYVVGTQFGRSISISRINATLKDRVPENEGPLLCSVCPG 170
++ + +F + + KYV+ + F R + S I L P PLL S CPG
Sbjct: 118 GKSTNEVAKIIASFFR-RLGVKYVIDSSFARKFAHSLIYEEL-STTPSTSRPLLSSACPG 175
Query: 171 FVLYAEKTKPE-LIPHMLDVKSPQQITGNLLK------QADPTC--YHLSIMPCFDKKLE 221
FV YAEK+ E LIP + ++SPQ I+G ++K + C +H ++MPCFDKKLE
Sbjct: 176 FVCYAEKSHGELLIPKISKIRSPQAISGAIIKGFLAKREGLSPCDVFHAAVMPCFDKKLE 235
Query: 222 ASREECE------KEVDCVITPKEFVAMLGDLSIDFKSYMTEYDSSKELCPSGWDYKLHW 275
ASRE+ + +E DCVI+ E + + L D ++ E S +E S K
Sbjct: 236 ASREQFKVDGTDVRETDCVISTAELLEEIIKLEND-EAGDVENRSEEEQWLSALS-KGSV 293
Query: 276 LSNEGSSSGGYAYQYLLSLQSSNPESDIITIEGKNSDVTEYRLVSKSKGVIASSSEVYGF 335
+ ++G +SGGYA + + N I+ N ++ + S++ ++ ++VYGF
Sbjct: 294 IGDDGGASGGYADRIVRDFVLEN-GGGIVKTSKLNKNMFSTTVESEAGEILLRVAKVYGF 352
Query: 336 RNIQNLVRKLSQSASXXXXXXXXXXXXQSVLKSGETSEKTTKVLTADPAKTDFVEVMACP 395
RN+QNLVRK+ KT K KTD+VE+MACP
Sbjct: 353 RNVQNLVRKM----------------------------KTKK------EKTDYVEIMACP 378
Query: 396 SGCINGGGLLNEEKNANRRKQL 417
GC NGGG + E R ++L
Sbjct: 379 GGCANGGGQIRYETMDEREEKL 400
>Hs11968051 [Y] KOG2439 Nuclear architecture related protein
Length = 476
Score = 184 bits (468), Expect = 2e-46
Identities = 147/466 (31%), Positives = 211/466 (44%), Gaps = 79/466 (16%)
Query: 2 SALLRDADLNDFISPGLACVKPAQPQK----------VEKKPS-FEVEVGIESSEPEKVS 50
S L+ DL+DFI P C+KP + +K +E S F++ + EK
Sbjct: 6 SGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAK 65
Query: 51 ISLQDCLACAGCITSSEEILLSKQSH---KVFLEKWSELEELDERSLAVSISPQCRLSLA 107
+SL DCLAC+GCITS+E +L+++QSH K L+ +R + VS+SPQ R SLA
Sbjct: 66 VSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLA 125
Query: 108 DYYSMCLADLDRCFQNFMKTKFNAKYVVGTQFGRSISISRINATLKDRVPENEG-----P 162
+ + D R +F K K +V T F R S+ R P
Sbjct: 126 ARFQLNPTDTARKLTSFFK-KIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALP 184
Query: 163 LLCSVCPGFVLYAEKTKPE-LIPHMLDVKSPQQITGNLLKQ--------ADPTCYHLSIM 213
LL S CPG++ YAEKT ++PH+ +SPQQ+ G+L+K YH+++M
Sbjct: 185 LLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVM 244
Query: 214 PCFDKKLEASR------EECEKEVDCVITPKEFVAMLGDLSIDFKSYMTEYDSSKELCPS 267
PC+DKKLEASR E ++VDCV+T E +L + + E LC S
Sbjct: 245 PCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPD--LEPAPLDSLC-S 301
Query: 268 GWDYKLHWLSNEGSSSGGY---AYQYLLSLQSSNPESDIITIEGKNSDVTEYRLVSKSKG 324
G + S+ G SGGY +++ +++ +N D E L K
Sbjct: 302 GASAE-EPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTL-EKEGQ 359
Query: 325 VIASSSEVYGFRNIQNLVRKLSQSASXXXXXXXXXXXXQSVLKSGETSEKTTKVLTADPA 384
V+ + YGFRNIQNLV++L +
Sbjct: 360 VLLHFAMAYGFRNIQNLVQRLKRGR----------------------------------C 385
Query: 385 KTDFVEVMACPSGCINGGGLLNEEKNANRRKQLAQDLSLAYTKVHS 430
+VEVMACPSGC+NGGG L +R +L Q + Y V +
Sbjct: 386 PYHYVEVMACPSGCLNGGGQLQAPDRPSR--ELLQHVERLYGMVRA 429
>Hs6912524 [Y] KOG2439 Nuclear architecture related protein
Length = 456
Score = 123 bits (309), Expect = 5e-28
Identities = 110/382 (28%), Positives = 167/382 (42%), Gaps = 75/382 (19%)
Query: 51 ISLQDCLACAGCITSSEEILLSKQSHKVFLEKWSELEELD---ERSLAVSISPQCRLSLA 107
I L DCLAC C+T+ E + LS+Q+ K F + ++ D + L VS+ PQ A
Sbjct: 48 IFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFA 107
Query: 108 DYYSMCLADLDRCFQNFMKTKFNAKYVVGTQFGRSISISRINATLKDRV-----PENEGP 162
+++ + D R F+K+ YV T SI R E P
Sbjct: 108 AKFNLSVTDASRRLCGFLKS-LGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLP 166
Query: 163 LLCSVCPGFVLYAEKT--KPELIPHMLDVKSPQQITGNLLKQ--------ADPTCYHLSI 212
+L S CPG+V YAE+ +P + H+ KSPQQ+ G+L+K + +H+ +
Sbjct: 167 MLTSACPGWVRYAERVLGRP-ITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIV 225
Query: 213 MPCFDKKLEASREEC------EKEVDCVITPKEFVAML--GDLSIDFKSYMTEYDSSKEL 264
PC+DKKLEA +E + DCV+T E ++ GDLS+ + T + KE
Sbjct: 226 APCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKED 285
Query: 265 CPSGWDYKLHWLSNEGSSSGGYAYQYL--LSLQSSNPESDIITIEG-KNSDVTEYRLVSK 321
+ ++G+SS G+ + + N + + +T +N D E L K
Sbjct: 286 KVT---------RHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTL-EK 335
Query: 322 SKGVIASSSEVYGFRNIQNLVRKLSQSASXXXXXXXXXXXXQSVLKSGETSEKTTKVLTA 381
+ V+ + YGFRNIQN++ K LK G+
Sbjct: 336 NGEVVLRFAAAYGFRNIQNMILK---------------------LKKGK----------- 363
Query: 382 DPAKTDFVEVMACPSGCINGGG 403
FVEV+AC GC+NG G
Sbjct: 364 --FPFHFVEVLACAGGCLNGRG 383
>Hs14165461 [Y] KOG2439 Nuclear architecture related protein
Length = 502
Score = 103 bits (257), Expect = 6e-22
Identities = 111/428 (25%), Positives = 169/428 (38%), Gaps = 121/428 (28%)
Query: 51 ISLQDCLACAGCITSSEEILLSKQSHKVFLEKWSELEELD---ERSLAVSISPQCRLSLA 107
I L DCLAC C+T+ E + LS+Q+ K F + ++ D + L VS+ PQ A
Sbjct: 48 IFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFA 107
Query: 108 DYYSMCLADLDRCFQNFMKTKFNAKYVVGTQFGRSISISRINATLKDRV-----PENEGP 162
+++ + D R F+K+ YV T SI R E P
Sbjct: 108 AKFNLSVTDASRRLCGFLKS-LGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLP 166
Query: 163 LLCSVCPGFVLYAEKT--KPELIPHMLDVKSPQQITGNLLKQ--------ADPTCYHLSI 212
+L S CPG+V YAE+ +P + H+ KSPQQ+ G+L+K + +H+ +
Sbjct: 167 MLTSACPGWVRYAERVLGRP-ITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIV 225
Query: 213 MPCFDKKLEASREEC------EKEVDCVIT------------------------------ 236
PC+DKKLEA +E + DCV+T
Sbjct: 226 APCYDKKLEALQESLPPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQ 285
Query: 237 --PKEFVAML----------------GDLSIDFKSYMTEYDSSKELCPSGWDYKLHWLSN 278
++ +A L GDLS+ + T + KE + +
Sbjct: 286 RLQRDKIAPLDSSLGGGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVT---------RH 336
Query: 279 EGSSSGGYAYQYL--LSLQSSNPESDIITIEG-KNSDVTEYRLVSKSKGVIASSSEVYGF 335
+G+SS G+ + + N + + +T +N D E L K+ V+ + YGF
Sbjct: 337 DGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTL-EKNGEVVLRFAAAYGF 395
Query: 336 RNIQNLVRKLSQSASXXXXXXXXXXXXQSVLKSGETSEKTTKVLTADPAKTDFVEVMACP 395
RNIQN++ K LK G+ FVEV+AC
Sbjct: 396 RNIQNMILK---------------------LKKGK-------------FPFHFVEVLACA 421
Query: 396 SGCINGGG 403
GC+NG G
Sbjct: 422 GGCLNGRG 429
>ECU05g0970 [Y] KOG2439 Nuclear architecture related protein
Length = 365
Score = 103 bits (257), Expect = 6e-22
Identities = 79/242 (32%), Positives = 124/242 (50%), Gaps = 29/242 (11%)
Query: 49 VSISLQDCLACAGCITSSEEILLSKQSHKVFLEKWSELEELDERSLAVSISPQCRLSLAD 108
+++SL DCLAC+GC+++ E LS E S + +L ++ V +SPQ ++++ +
Sbjct: 29 LALSLSDCLACSGCVSADEAGALS--------EDLSFVLDLSPQTSFV-LSPQSKINIFN 79
Query: 109 YY---SMCLADLDRCFQNFMKTKFNAKYVVGTQFGRSISISRINATLKDRVPENEGPLLC 165
Y M + + +F+++KFN +V T + RS T ++ + N L+
Sbjct: 80 LYREDGMEYREFEAVLSSFLRSKFNIHRIVDTSYLRS---KIYEETYREYMATNH--LIV 134
Query: 166 SVCPGFVLYAEKTKPELIPHMLDVKSPQQITGNLLKQADPTCYHLSIMPCFDKKLEASRE 225
S CPG V Y E+T P LI ++ VKSPQQ+ +L+K + +S+MPC DKKLE R+
Sbjct: 135 SACPGVVTYIERTAPYLIGYLSRVKSPQQMAFSLVKGSRT----VSVMPCQDKKLENGRD 190
Query: 226 ECEKEVDCVITPKEFVAMLGDLSIDFKSYMTEYDSSKELCPSGWDYKLHWLSNEGSSSGG 285
+ D ++T + F L L + S K LC W N G+SSGG
Sbjct: 191 GV--KFDFILTTRGFCKALDSLGFRRPARA----SGKSLCSMEEAETTQW--NIGTSSGG 242
Query: 286 YA 287
YA
Sbjct: 243 YA 244
>7289425 [Y] KOG2439 Nuclear architecture related protein
Length = 241
Score = 83.2 bits (204), Expect = 8e-16
Identities = 79/274 (28%), Positives = 121/274 (43%), Gaps = 62/274 (22%)
Query: 193 QQITGNLLKQADPTCYHLSIMPCFDKKLEASREEC------EKEVDCVITPKEFVAMLGD 246
+QI + + YH+++MPC+DKKLEASRE+ ++VDCVIT E +L +
Sbjct: 6 KQILADKMNVPASRIYHVTVMPCYDKKLEASREDFFSKANNSRDVDCVITSVEVEQLLSE 65
Query: 247 LSIDFKSYMTEYDSSKELCPSGWDYK------LHWLSNEGSSSGGYA---YQYLLS-LQS 296
Y +L W + + W ++E + SGGYA ++Y + +
Sbjct: 66 AQQPLSQY--------DLLDLDWPWSNVRPEFMVW-AHEKTLSGGYAEHIFKYAAKHIFN 116
Query: 297 SNPESDIITIEGKNSDVTEYRLVSKSKGVIASSSEVYGFRNIQNLVRKLSQSASXXXXXX 356
+ ++++ + KN D E L K V+ + GFRNIQNLV+KL
Sbjct: 117 EDLKTELEFKQLKNRDFREIILKQNGKTVL-KFAIANGFRNIQNLVQKL----------- 164
Query: 357 XXXXXXQSVLKSGETSEKTTKVLTADPAKTDFVEVMACPSGCINGGGLLNEEKNANRRKQ 416
K KV + FVEVMACPSGCINGG + + R +
Sbjct: 165 -----------------KREKV-----SNYHFVEVMACPSGCINGGAQIRPTTGQHVR-E 201
Query: 417 LAQDLSLAYTKVHSVNIPDIV--HAYDDKSNDFK 448
L + L Y + + + H Y+D + F+
Sbjct: 202 LTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ 235
>At4g16440_2 [Y] KOG2439 Nuclear architecture related protein
Length = 304
Score = 69.3 bits (168), Expect = 1e-11
Identities = 41/85 (48%), Positives = 51/85 (59%), Gaps = 1/85 (1%)
Query: 2 SALLRDADLNDFISPGLACVKPAQPQKVEKKPSFEVEVGIESSEP-EKVSISLQDCLACA 60
S LR DLNDFI+P ACV + K K S +V I + E V ISL+DCLAC+
Sbjct: 6 SPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQQLEPVKISLKDCLACS 65
Query: 61 GCITSSEEILLSKQSHKVFLEKWSE 85
GCITS+E ++L KQS FL S+
Sbjct: 66 GCITSAETVMLEKQSLDEFLSALSK 90
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,943,557
Number of Sequences: 60738
Number of extensions: 1184788
Number of successful extensions: 2511
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2461
Number of HSP's gapped (non-prelim): 16
length of query: 469
length of database: 30,389,216
effective HSP length: 110
effective length of query: 359
effective length of database: 23,708,036
effective search space: 8511184924
effective search space used: 8511184924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)