ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactMIT295 good C KOG4665 Energy production and conversion ATP synthase F0 subunit 6 and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactMIT295 26562 25795 -256
(256 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMi012 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 306 2e-83
SPMi006 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 161 7e-40
AtMi097 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 139 4e-33
AtMi031 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 138 9e-33
At2g07741 [C] KOG4665 ATP synthase F0 subunit 6 and related prot... 138 9e-33
HsMi001 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 64 2e-10
DmMi001 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins 62 8e-10
>YMi012 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 259
Score = 306 bits (783), Expect = 2e-83
Identities = 152/256 (59%), Positives = 180/256 (69%)
Query: 1 MLNLFITSPLDQFEIRVLMGFTSPLLDFSSLNFTTFSLYTIIVLFTVXXXXXXXXXXXKI 60
+LN +ITSPLDQFEIR L G S +D S LN TTFSLYTIIVL + KI
Sbjct: 4 LLNTYITSPLDQFEIRTLFGLQSSFIDLSCLNLTTFSLYTIIVLLVITSLYTLTNNNNKI 63
Query: 61 IGSKWFVSQEAIYDTILNMVKGQIGGKLWGYYFPLVYTFFFFIFVSNLISMIPYSFALSA 120
IGS+W +SQEAIYDTI+NM KGQIGGK WG YFP+++T F FIF++NLISMIPYSFALSA
Sbjct: 64 IGSRWLISQEAIYDTIMNMTKGQIGGKNWGLYFPMIFTLFMFIFIANLISMIPYSFALSA 123
Query: 121 HLIFIVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAISL 180
HL+FI+SLS VIWLG TI+GL KHG VFFS SYFARAISL
Sbjct: 124 HLVFIISLSIVIWLGNTILGLYKHGWVFFSLFVPAGTPLPLVPLLVIIETLSYFARAISL 183
Query: 181 GLRLSSNVLSGHXXXXXXXXXXFNLMSMSIITFVFGLIPGVGLLAIVVLEFAISVIQAYV 240
GLRL SN+L+GH FN M +++ T VFG +P +LAI++LEFAI +IQ YV
Sbjct: 184 GLRLGSNILAGHLLMVILAGLTFNFMLINLFTLVFGFVPLAMILAIMMLEFAIGIIQGYV 243
Query: 241 WSILTSSYLKDVLYLH 256
W+ILT+SYLKD +YLH
Sbjct: 244 WAILTASYLKDAVYLH 259
>SPMi006 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 257
Score = 161 bits (408), Expect = 7e-40
Identities = 95/258 (36%), Positives = 138/258 (52%), Gaps = 6/258 (2%)
Query: 4 LFITSPLDQFEIRVLMGFT--SPLLDFSSLNFTTFSLYTIIVLFTVXXXXXXXXXXXKII 61
+FITSPL+QFE+ GF + DFS+ F L +I + KI+
Sbjct: 1 MFITSPLEQFELNNYFGFYLFNYHFDFSNFGFY-LGLSALIAISLAIINLTPYGSGAKIV 59
Query: 62 GSKWFVSQEAIYDTILNMVKGQIGGKLW---GYYFPLVYTFFFFIFVSNLISMIPYSFAL 118
K+ ++ EAIY T+LN+V+ QI YFP +++ F I SNL+ +IPY +A
Sbjct: 60 PQKFGIAMEAIYFTMLNLVENQIHSSKTVSGQSYFPFIWSLFVLILFSNLLRLIPYGYAT 119
Query: 119 SAHLIFIVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAI 178
+A LIF + LS I +GATI+GL +H F SY AR +
Sbjct: 120 TAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGL 179
Query: 179 SLGLRLSSNVLSGHXXXXXXXXXXFNLMSMSIITFVFGLIPGVGLLAIVVLEFAISVIQA 238
SLG+RL +N+++GH F M +++ITF+ G +P L+AI +LEF I+ IQA
Sbjct: 180 SLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLVAISLLEFGIAFIQA 239
Query: 239 YVWSILTSSYLKDVLYLH 256
YV++ILT ++ D L LH
Sbjct: 240 YVFAILTCGFINDSLNLH 257
>AtMi097 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 349
Score = 139 bits (350), Expect = 4e-33
Identities = 87/255 (34%), Positives = 131/255 (51%), Gaps = 5/255 (1%)
Query: 6 ITSPLDQFEIRVLMGFTSPLLDFSSLNFTTFSLYTIIVLFTVXXXXXXXXXXXKIIGSKW 65
I SPLDQFEI L+ FS N + F L T+ F + ++ + W
Sbjct: 96 IPSPLDQFEIVPLIPMHIGNFYFSFTNPSLFMLLTLS-FFLLLIHFVTKKGGGNLVPNAW 154
Query: 66 FVSQEAIYDTILNMVKGQIGG---KLWGYYFPLVYTFFFFIFVSNLISMIPYSFALSAHL 122
E +YD +LN+VK QIGG + +FP + F F+ NL MIPYSF +++H
Sbjct: 155 QSLVELLYDFVLNLVKEQIGGLSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHF 214
Query: 123 IFIVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAISLGL 182
+ ++LS I++G TI+G +HGL FFS SY RA+SLG+
Sbjct: 215 LITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGI 274
Query: 183 RLSSNVLSGHXXXXXXXXXXFNLMSMS-IITFVFGLIPGVGLLAIVVLEFAISVIQAYVW 241
RL +N+++GH + ++ M+ I F+ L P +LA+ LE ++++QAYV+
Sbjct: 275 RLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVF 334
Query: 242 SILTSSYLKDVLYLH 256
+IL YL D + LH
Sbjct: 335 TILICIYLNDAINLH 349
>AtMi031 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 385
Score = 138 bits (347), Expect = 9e-33
Identities = 86/253 (33%), Positives = 130/253 (50%), Gaps = 5/253 (1%)
Query: 8 SPLDQFEIRVLMGFTSPLLDFSSLNFTTFSLYTIIVLFTVXXXXXXXXXXXKIIGSKWFV 67
SPLDQFEI L+ FS N + F L T+ F + ++ + W
Sbjct: 134 SPLDQFEIVPLIPMHIGNFYFSFTNPSLFMLLTLS-FFLLLIHFVTKKGGGNLVPNAWQS 192
Query: 68 SQEAIYDTILNMVKGQIGG---KLWGYYFPLVYTFFFFIFVSNLISMIPYSFALSAHLIF 124
E +YD +LN+VK QIGG + +FP + F F+ NL MIPYSF +++H +
Sbjct: 193 LVELLYDFVLNLVKEQIGGLSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLI 252
Query: 125 IVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAISLGLRL 184
++LS I++G TI+G +HGL FFS SY RA+SLG+RL
Sbjct: 253 TLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRL 312
Query: 185 SSNVLSGHXXXXXXXXXXFNLMSMS-IITFVFGLIPGVGLLAIVVLEFAISVIQAYVWSI 243
+N+++GH + ++ M+ I F+ L P +LA+ LE ++++QAYV++I
Sbjct: 313 FANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTI 372
Query: 244 LTSSYLKDVLYLH 256
L YL D + LH
Sbjct: 373 LICIYLNDAINLH 385
>At2g07741 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 385
Score = 138 bits (347), Expect = 9e-33
Identities = 86/253 (33%), Positives = 130/253 (50%), Gaps = 5/253 (1%)
Query: 8 SPLDQFEIRVLMGFTSPLLDFSSLNFTTFSLYTIIVLFTVXXXXXXXXXXXKIIGSKWFV 67
SPLDQFEI L+ FS N + F L T+ F + ++ + W
Sbjct: 134 SPLDQFEIVPLIPMHIGNFYFSFTNPSLFMLLTLS-FFLLLIHFVTKKGGGNLVPNAWQS 192
Query: 68 SQEAIYDTILNMVKGQIGG---KLWGYYFPLVYTFFFFIFVSNLISMIPYSFALSAHLIF 124
E +YD +LN+VK QIGG + +FP + F F+ NL MIPYSF +++H +
Sbjct: 193 LVELLYDFVLNLVKEQIGGLSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLI 252
Query: 125 IVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAISLGLRL 184
++LS I++G TI+G +HGL FFS SY RA+SLG+RL
Sbjct: 253 TLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRL 312
Query: 185 SSNVLSGHXXXXXXXXXXFNLMSMS-IITFVFGLIPGVGLLAIVVLEFAISVIQAYVWSI 243
+N+++GH + ++ M+ I F+ L P +LA+ LE ++++QAYV++I
Sbjct: 313 FANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTI 372
Query: 244 LTSSYLKDVLYLH 256
L YL D + LH
Sbjct: 373 LICIYLNDAINLH 385
>HsMi001 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 226
Score = 63.9 bits (154), Expect = 2e-10
Identities = 41/166 (24%), Positives = 77/166 (45%), Gaps = 6/166 (3%)
Query: 86 GKLWGYYFPLVYTFFFFIFVSNLISMIPYSFALSAHLIFIVSLSSVIWLGATIIGLTKHG 145
G+ W ++ + FI +NL+ ++P+SF + L ++++ +W GA I+G
Sbjct: 65 GRTWSL---MLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKI 121
Query: 146 LVFFSXXXXXXXXXXXXXXXXXXXXXSYFARAISLGLRLSSNVLSGHXXXXXXXXXXFNL 205
+ S + ++L +RL++N+ +GH
Sbjct: 122 KNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSAT--- 178
Query: 206 MSMSIITFVFGLIPGVGLLAIVVLEFAISVIQAYVWSILTSSYLKD 251
++MS I LI L+ + +LE A+++IQAYV+++L S YL D
Sbjct: 179 LAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHD 224
>DmMi001 [C] KOG4665 ATP synthase F0 subunit 6 and related proteins
Length = 224
Score = 62.0 bits (149), Expect = 8e-10
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 98 TFFFFIFVSNLISMIPYSFALSAHLIFIVSLSSVIWLGATIIGLTKHGLVFFSXXXXXXX 157
+ F I +N + + PY F ++HL +SL+ +WL + G H F+
Sbjct: 75 SLFSLILFNNFMGLFPYIFTSTSHLTLTLSLALPLWLCFMLYGWINHTQHMFAHLVPQGT 134
Query: 158 XXXXXXXXXXXXXXSYFARAISLGLRLSSNVLSGHXXXXXXXXXXFNLMSMSIITFVFGL 217
S R +L +RL++N+++GH + MS ++TF+
Sbjct: 135 PAILMPFMVCIETISNIIRPGTLAVRLTANMIAGHLLLTLLGNTG-SSMSYMLMTFLL-- 191
Query: 218 IPGVGLLAIVVLEFAISVIQAYVWSILTSSYLKDV 252
+ +A++VLE A+++IQ+YV+++L++ Y +V
Sbjct: 192 ---MAQIALLVLESAVAMIQSYVFAVLSTLYSSEV 223
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.333 0.146 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,844,268
Number of Sequences: 60738
Number of extensions: 339188
Number of successful extensions: 1040
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 7
length of query: 256
length of database: 30,389,216
effective HSP length: 104
effective length of query: 152
effective length of database: 24,072,464
effective search space: 3659014528
effective search space used: 3659014528
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)