ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactMIT310 good C KOG4769 Energy production and conversion Cytochrome c oxidase, subunit I
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactMIT310 27948 27493 -152
(152 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMi004 [C] KOG4769 Cytochrome c oxidase subunit I 285 1e-77
SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I 170 8e-43
AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I 135 2e-32
DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I 109 1e-24
HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I 104 5e-23
CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I 98 5e-21
>YMi004 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 534
Score = 285 bits (730), Expect = 1e-77
Identities = 137/152 (90%), Positives = 141/152 (92%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
MGAIFSLFAGYYYWSPQILGL YNEKLAQIQFWLIF+GANVIF PMHFLG+NGMPRRIPD
Sbjct: 383 MGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLIFIGANVIFFPMHFLGINGMPRRIPD 442
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YPDAFAGWNYVASIGS IA SLFLFIYILYDQLVNGL NKVNNKSVIYNK PDFVESN
Sbjct: 443 YPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYNKAPDFVESNT 502
Query: 121 IFATNKIKSSSIEFLLTSPPAVHTFNTPAVQS 152
IF N +KSSSIEFLLTSPPAVH+FNTPAVQS
Sbjct: 503 IFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS 534
>SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 537
Score = 170 bits (430), Expect = 8e-43
Identities = 81/153 (52%), Positives = 107/153 (68%), Gaps = 7/153 (4%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
MGA+F L G YYWSP++ GL YNE LA IQFW++F+G N++F P HFLG+NGMPRRIPD
Sbjct: 390 MGALFGL-CGAYYWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPD 448
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YP+AF GWN+V+SIGS+I++ SLFLF+Y++YDQ + K N + P + + N
Sbjct: 449 YPEAFVGWNFVSSIGSVISILSLFLFMYVMYDQFTSNRVVKTNPYLI-----PSYFDDNV 503
Query: 121 IFATNKI-KSSSIEFLLTSPPAVHTFNTPAVQS 152
IF K+ + SIE+LL SP H FNT +S
Sbjct: 504 IFVNEKLGVAQSIEWLLHSPVHEHAFNTLPTKS 536
>AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 527
Score = 135 bits (341), Expect = 2e-32
Identities = 71/152 (46%), Positives = 96/152 (62%), Gaps = 17/152 (11%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
MGA+F+LFAG+YYW +I G Y E L QI FW+ F G N+ F PMHFLG++GMPRRIPD
Sbjct: 385 MGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPD 444
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YPDA+AGWN ++S GS I+V + F ++ L +G NNK P +E N
Sbjct: 445 YPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSG-----NNKRCA--PSPWALELN- 496
Query: 121 IFATNKIKSSSIEFLLTSPPAVHTF-NTPAVQ 151
S+++E+++ SPPA HTF PA++
Sbjct: 497 --------STTLEWMVQSPPAFHTFGELPAIK 520
>DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 511
Score = 109 bits (273), Expect = 1e-24
Identities = 55/146 (37%), Positives = 85/146 (57%), Gaps = 22/146 (15%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
MGA+F++ AG+ +W P GL N K + F ++F+G N+ F P HFLG+ GMPRR D
Sbjct: 381 MGAVFAIMAGFIHWYPLFTGLTLNNKWLKSHFIIMFIGVNLTFFPQHFLGLAGMPRRYSD 440
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YPDA+ WN V++IGS I++ + F +I+++ L V+ + VIY ++ N
Sbjct: 441 YPDAYTTWNIVSTIGSTISLLGILFFFFIIWESL-------VSQRQVIYP-----IQLN- 487
Query: 121 IFATNKIKSSSIEFLLTSPPAVHTFN 146
SSIE+ +PPA H+++
Sbjct: 488 ---------SSIEWYQNTPPAEHSYS 504
>HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 513
Score = 104 bits (259), Expect = 5e-23
Identities = 49/148 (33%), Positives = 83/148 (55%), Gaps = 22/148 (14%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
MGA+F++ G+ +W P G ++ A+I F ++F+G N+ F P HFLG++GMPRR D
Sbjct: 383 MGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSD 442
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YPDA+ WN ++S+GS I++ ++ L I+++++ + + V+ + P
Sbjct: 443 YPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAF-------ASKRKVLMVEEP------- 488
Query: 121 IFATNKIKSSSIEFLLTSPPAVHTFNTP 148
S ++E+L PP HTF P
Sbjct: 489 --------SMNLEWLYGCPPPYHTFEEP 508
>CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 525
Score = 97.8 bits (242), Expect = 5e-21
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 1 MGAIFSLFAGYYYWSPQILGLYYNEKLAQIQFWLIFVGANVIFLPMHFLGVNGMPRRIPD 60
+GA+F +F G W I G ++ + F L+F+G N+ F P+HF G++G PR+ D
Sbjct: 390 LGAVFGIFTGVTLWWSFITGYVLDKLMMSAVFILLFIGVNLTFFPLHFAGLHGFPRKYLD 449
Query: 61 YPDAFAGWNYVASIGSIIAVFSLFLFIYILYDQLVNGLENKVNNKSVIYNKGPDFVESNQ 120
YPD ++ WN +AS GSII+ LFLFIY+L + ++ N P++ SN
Sbjct: 450 YPDVYSVWNIIASYGSIISTAGLFLFIYVLLESF---FSYRLVISDYYSNSSPEYCMSNY 506
Query: 121 IFATNKIKSSSIEFLLTS 138
+F + S I F TS
Sbjct: 507 VFGHS--YQSEIYFSTTS 522
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.142 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,170,913
Number of Sequences: 60738
Number of extensions: 360620
Number of successful extensions: 1056
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 9
length of query: 152
length of database: 30,389,216
effective HSP length: 97
effective length of query: 55
effective length of database: 24,497,630
effective search space: 1347369650
effective search space used: 1347369650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)