ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactMIT328 suspect: HSP C KOG4769 Energy production and conversion Cytochrome c oxidase, subunit I
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactMIT328 29838 28435 -468
(468 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMi004 [C] KOG4769 Cytochrome c oxidase subunit I 86 2e-16
AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I 69 2e-11
SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I 64 4e-10
HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I 59 1e-08
DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I 55 2e-07
CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I 52 2e-06
>YMi004 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 534
Score = 85.5 bits (210), Expect = 2e-16
Identities = 42/45 (93%), Positives = 44/45 (97%)
Query: 27 ATIYGGSIRLAVPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
ATI+GGSIRLA PMLYAIAFLFLFT+GGLTGVALANASLDVAFHD
Sbjct: 325 ATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALANASLDVAFHD 369
>AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 527
Score = 68.6 bits (166), Expect = 2e-11
Identities = 29/45 (64%), Positives = 38/45 (84%)
Query: 27 ATIYGGSIRLAVPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
AT++GGSI+ PML+A+ F+FLFTIGGLTG+ LAN+ LD+A HD
Sbjct: 327 ATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHD 371
>SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 537
Score = 64.3 bits (155), Expect = 4e-10
Identities = 32/46 (69%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 27 ATIYGGSIRLA-VPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
AT+ GG+I+ + VPMLYAI FL LFTIGGLTGV L+N+ LD+AFHD
Sbjct: 331 ATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHD 376
>HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 513
Score = 59.3 bits (142), Expect = 1e-08
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 27 ATIYGGSIRLAVPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
AT++G +++ + +L+A+ F+FLFT+GGLTG+ LAN+SLD+ HD
Sbjct: 325 ATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHD 369
>DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 511
Score = 55.5 bits (132), Expect = 2e-07
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 27 ATIYGGSIRLAVPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
AT++G + + +L+A+ F+FLFT+GGLTGV LAN+S+D+ HD
Sbjct: 323 ATLHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHD 367
>CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 525
Score = 51.6 bits (122), Expect = 2e-06
Identities = 22/45 (48%), Positives = 33/45 (72%)
Query: 27 ATIYGGSIRLAVPMLYAIAFLFLFTIGGLTGVALANASLDVAFHD 71
AT++G + +L+ + F+FLFT+GGLTGV L+N+SLD+ HD
Sbjct: 332 ATLFGMKMVFNPLLLWVLGFIFLFTLGGLTGVVLSNSSLDIILHD 376
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.326 0.141 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,206,490
Number of Sequences: 60738
Number of extensions: 608501
Number of successful extensions: 1464
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 6
length of query: 468
length of database: 30,389,216
effective HSP length: 110
effective length of query: 358
effective length of database: 23,708,036
effective search space: 8487476888
effective search space used: 8487476888
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)