ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactMIT345 normal C KOG4769 Energy production and conversion Cytochrome c oxidase, subunit I
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactMIT345 31611 30265 -449
(449 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMi005_1 [C] KOG4769 Cytochrome c oxidase subunit I 194 2e-49
YMi004 [C] KOG4769 Cytochrome c oxidase subunit I 181 2e-45
AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I 160 4e-39
DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I 149 1e-35
HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I 147 3e-35
SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I 142 1e-33
CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I 130 5e-30
>YMi005_1 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 421
Score = 194 bits (494), Expect = 2e-49
Identities = 110/199 (55%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYSKKPVFGEVSMVYAMASIGLLGF 91
G D +L+ F FFGHPEVYILIIPGFGIISH+VSTYSKKPVFGE+SMVYAMASIGLLGF
Sbjct: 226 GGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGF 285
Query: 92 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLMNSFXXXXXXXXXXXXXXXXX 151
LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLMN F
Sbjct: 286 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLMNPFSKDKNKNKNKKLIRNYQ 345
Query: 152 XXXXXXXXXXXPRGQSPVIGNMTAGMNKIXXXXXXXXXXXXXXXXXKKLTIYGTNLYSNL 211
+ ++ NM G N K+L +YG NL S +
Sbjct: 346 KMNNNNMMKTYLNNNNMIMMNMYKG-NLYDIYPRSNRNYIQPNNINKELVVYGYNLESCV 404
Query: 212 MNKEYNNTMMIKYMIKIPN 230
Y N ++K+M+ IPN
Sbjct: 405 GMPTYTN--IVKHMVGIPN 421
>YMi004 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 534
Score = 181 bits (459), Expect = 2e-45
Identities = 89/99 (89%), Positives = 93/99 (93%), Gaps = 2/99 (2%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYSKKPVFGEVSMVYAMASIGLLGF 91
G D +L+ F FFGHPEVYILIIPGFGIISH+VSTYSKKPVFGE+SMVYAMASIGLLGF
Sbjct: 226 GGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGF 285
Query: 92 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 130
LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL
Sbjct: 286 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 324
>AtMi114 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 527
Score = 160 bits (405), Expect = 4e-39
Identities = 76/99 (76%), Positives = 88/99 (88%), Gaps = 2/99 (2%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYSKKPVFGEVSMVYAMASIGLLGF 91
G D +L++ F FFGHPEVYILI+PGFGIISHIVST+S KPVFG + MVYAM SIG+LGF
Sbjct: 228 GGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGF 287
Query: 92 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 130
LVW+HHM+ VGLD DTRAYFT+ATMIIA+PTGIKIFSW+
Sbjct: 288 LVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWI 326
>DmMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 511
Score = 149 bits (375), Expect = 1e-35
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 3/100 (3%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYS-KKPVFGEVSMVYAMASIGLLG 90
G D +L++ F FFGHPEVYILI+PGFG+ISHI+S S KK FG + M+YAM +IGLLG
Sbjct: 223 GGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESGKKETFGSLGMIYAMLAIGLLG 282
Query: 91 FLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 130
F+VW+HHM+ VG+D DTRAYFTSATMIIA+PTGIKIFSWL
Sbjct: 283 FIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWL 322
>HsMi003 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 513
Score = 147 bits (371), Expect = 3e-35
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 3/100 (3%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYS-KKPVFGEVSMVYAMASIGLLG 90
G D +L++ F FFGHPEVYILI+PGFG+ISHIV+ YS KK FG + MV+AM SIG LG
Sbjct: 225 GGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLG 284
Query: 91 FLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 130
F+VW+HHM+ VG+D DTRAYFTSATMIIAIPTG+K+FSWL
Sbjct: 285 FIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWL 324
>SPMi001 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 537
Score = 142 bits (358), Expect = 1e-33
Identities = 64/99 (64%), Positives = 83/99 (83%), Gaps = 2/99 (2%)
Query: 34 GKDNMLFR--FGFFGHPEVYILIIPGFGIISHIVSTYSKKPVFGEVSMVYAMASIGLLGF 91
G D +L++ F FFGHPEVYILI+P FG++SHI+ + + KP+FG+ M++AM SI LLG
Sbjct: 232 GGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPSLAHKPIFGKEGMLWAMLSIALLGL 291
Query: 92 LVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWL 130
+VWSHH++ VGLD DTRAYF++ATM+IAIPTGIKIFSWL
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWL 330
>CEMi002 [C] KOG4769 Cytochrome c oxidase subunit I
Length = 525
Score = 130 bits (326), Expect = 5e-30
Identities = 59/94 (62%), Positives = 75/94 (79%), Gaps = 1/94 (1%)
Query: 42 FGFFGHPEVYILIIPGFGIISH-IVSTYSKKPVFGEVSMVYAMASIGLLGFLVWSHHMYI 100
F FFGHPEVYILI+P FGI+S + KK VFG + MVYA+ SIGL+G +VW+HHMY
Sbjct: 242 FWFFGHPEVYILILPAFGIVSQSTLYLTGKKEVFGALGMVYAILSIGLIGCVVWAHHMYT 301
Query: 101 VGLDADTRAYFTSATMIIAIPTGIKIFSWLMNSF 134
VG+D D+RAYF++ATM+IA+PTG+K+FSWL F
Sbjct: 302 VGMDLDSRAYFSAATMVIAVPTGVKVFSWLATLF 335
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,020,234
Number of Sequences: 60738
Number of extensions: 892800
Number of successful extensions: 2339
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2328
Number of HSP's gapped (non-prelim): 8
length of query: 449
length of database: 30,389,216
effective HSP length: 110
effective length of query: 339
effective length of database: 23,708,036
effective search space: 8037024204
effective search space used: 8037024204
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)