ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactMIT413 good C KOG4664 Energy production and conversion Cytochrome oxidase subunit III and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactMIT413 38527 39345 273
(273 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMi027 [C] KOG4664 Cytochrome oxidase subunit III and related pr... 466 e-131
HsMi005 [C] KOG4664 Cytochrome oxidase subunit III and related p... 250 1e-66
AtMi060 [C] KOG4664 Cytochrome oxidase subunit III and related p... 249 2e-66
DmMi005 [C] KOG4664 Cytochrome oxidase subunit III and related p... 237 2e-62
At2g07687 [C] KOG4664 Cytochrome oxidase subunit III and related... 234 1e-61
CEMi004 [C] KOG4664 Cytochrome oxidase subunit III and related p... 188 8e-48
Hs22056976 [C] KOG4664 Cytochrome oxidase subunit III and relate... 62 7e-10
Hs22051424_2 [C] KOG4664 Cytochrome oxidase subunit III and rela... 57 2e-08
Hs22042472 [C] KOG4664 Cytochrome oxidase subunit III and relate... 53 4e-07
Hs18551186_2 [C] KOG4664 Cytochrome oxidase subunit III and rela... 51 2e-06
>YMi027 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 269
Score = 466 bits (1200), Expect = e-131
Identities = 211/269 (78%), Positives = 237/269 (87%)
Query: 5 MTHLERSRHQQFPFHLVAPSPWPIVVXXXXXXXXXXXXXTMHGYIGHMYLIYLSILTVTL 64
MTHLERSRHQQ PFH+V PSPWPIVV TMHGYIG+M ++YL++ +
Sbjct: 1 MTHLERSRHQQHPFHMVMPSPWPIVVSFALLSLALSTALTMHGYIGNMNMVYLALFVLLT 60
Query: 65 SATLWFRDIIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAYFHSAMSPNIEL 124
S+ LWFRDI+AEATYLGDHT+AVRKGINLGFL+FV+SE+LIFA LFWAYFHSAMSP++ L
Sbjct: 61 SSILWFRDIVAEATYLGDHTMAVRKGINLGFLMFVLSEVLIFAGLFWAYFHSAMSPDVTL 120
Query: 125 GGVWPPVGIQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALSGLLITFWLIVI 184
G WPPVGI+AVQPTELPLLNTIILLSSGAT+TYSHH L+ GNR ALSGLLITFWLIVI
Sbjct: 121 GACWPPVGIEAVQPTELPLLNTIILLSSGATVTYSHHALIAGNRNKALSGLLITFWLIVI 180
Query: 185 FVTCQYIEYTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTATHH 244
FVTCQYIEYTNA FTI+DGVYGSVFYAGTGLHFLHMVMLAAMLG+NYWR+RNYHLTA HH
Sbjct: 181 FVTCQYIEYTNAAFTISDGVYGSVFYAGTGLHFLHMVMLAAMLGVNYWRMRNYHLTAGHH 240
Query: 245 VGYETTVLYCHILDIIWLFLYIVFYWWGV 273
VGYETT++Y H+LD+IWLFLY+VFYWWGV
Sbjct: 241 VGYETTIIYTHVLDVIWLFLYVVFYWWGV 269
>HsMi005 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 260
Score = 250 bits (639), Expect = 1e-66
Identities = 112/260 (43%), Positives = 159/260 (61%), Gaps = 2/260 (0%)
Query: 13 HQQFPFHLVAPSPWPIVVXXXXXXXXXXXXXTMHGYIGHMYLIYLSILTVTLSATLWFRD 72
HQ +H+V PSPWP+ H + M L+ L +LT TL+ W+RD
Sbjct: 3 HQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFH--SMTLLMLGLLTNTLTMYQWWRD 60
Query: 73 IIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAYFHSAMSPNIELGGVWPPVG 132
+ E+TY G HT V+KG+ G +LF+ SE+ FA FWA++HS+++P +LGG WPP G
Sbjct: 61 VTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
Query: 133 IQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALSGLLITFWLIVIFVTCQYIE 192
I + P E+PLLNT +LL+SG +IT++HH L+ NR + LLIT L + F Q E
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
Query: 193 YTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTATHHVGYETTVL 252
Y + FTI+DG+YGS F+ TG H LH+++ + L I + R +H T+ HH G+E
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240
Query: 253 YCHILDIIWLFLYIVFYWWG 272
Y H +D++WLFLY+ YWWG
Sbjct: 241 YWHFVDVVWLFLYVSIYWWG 260
>AtMi060 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 265
Score = 249 bits (637), Expect = 2e-66
Identities = 112/265 (42%), Positives = 164/265 (61%), Gaps = 3/265 (1%)
Query: 8 LERSRHQQFPFHLVAPSPWPIVVXXXXXXXXXXXXXTMHGYIGHMYLIYLSILTVTLSAT 67
+E RH +HLV PSPWPI MH + G L+ L ++ + +
Sbjct: 2 IESQRHS---YHLVDPSPWPISGSLGALATTVGGVMYMHSFQGGARLLSLGLIFILYTMF 58
Query: 68 LWFRDIIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAYFHSAMSPNIELGGV 127
+W+RD++ E+T G HT V+ G+ GF+LF+VSE++ F A FWA+FHS+++P +E+GG+
Sbjct: 59 VWWRDVLRESTLEGHHTKVVQLGLRYGFILFIVSEVMFFFAFFWAFFHSSLAPAVEIGGI 118
Query: 128 WPPVGIQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALSGLLITFWLIVIFVT 187
WPP GI+ + P E+P LNT+ILLSSGA +T++HH ++ G K A+ L+ T L ++F
Sbjct: 119 WPPKGIEVLDPWEIPFLNTLILLSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTG 178
Query: 188 CQYIEYTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTATHHVGY 247
Q +EY A FTI+D +YGS F+ TG H H+++ L I R HLT HHVG+
Sbjct: 179 FQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGF 238
Query: 248 ETTVLYCHILDIIWLFLYIVFYWWG 272
E Y H +D++WLFL++ YWWG
Sbjct: 239 EAAAWYWHFVDVVWLFLFVSIYWWG 263
>DmMi005 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 262
Score = 237 bits (604), Expect = 2e-62
Identities = 111/262 (42%), Positives = 148/262 (56%), Gaps = 2/262 (0%)
Query: 11 SRHQQFPFHLVAPSPWPIVVXXXXXXXXXXXXXTMHGYIGHMYLIYLSILTVTLSATLWF 70
S H PFHLV SPWP+ H Y + L L + L+ W+
Sbjct: 2 STHSNHPFHLVDYSPWPLTGAIGAMTTVSGMVKWFHQY--DISLFVLGNIITILTVYQWW 59
Query: 71 RDIIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAYFHSAMSPNIELGGVWPP 130
RD+ E TY G HT AV G+ G +LF++SE+L F + FWA+FHS++SP IELG WPP
Sbjct: 60 RDVSREGTYQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAFFHSSLSPAIELGASWPP 119
Query: 131 VGIQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALSGLLITFWLIVIFVTCQY 190
+GI + P ++PLLNT ILL+SG T+T++HH L+ N GL T L + F Q
Sbjct: 120 MGIISFNPFQIPLLNTAILLASGVTVTWAHHSLMENNHSQTTQGLFFTVLLGIYFTILQA 179
Query: 191 IEYTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTATHHVGYETT 250
EY A FTI D +YGS F+ TG H +H+++ L + R N H + HH G+E
Sbjct: 180 YEYIEAPFTIADSIYGSTFFMATGFHGIHVLIGTTFLLVCLLRHLNNHFSKNHHFGFEAA 239
Query: 251 VLYCHILDIIWLFLYIVFYWWG 272
Y H +D++WLFLYI YWWG
Sbjct: 240 AWYWHFVDVVWLFLYITIYWWG 261
>At2g07687 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 265
Score = 234 bits (597), Expect = 1e-61
Identities = 109/265 (41%), Positives = 158/265 (59%), Gaps = 3/265 (1%)
Query: 8 LERSRHQQFPFHLVAPSPWPIVVXXXXXXXXXXXXXTMHGYIGHMYLIYLSILTVTLSAT 67
+E RH +HLV PSPWPI MH + G L+ L ++ + +
Sbjct: 2 IESQRHS---YHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMF 58
Query: 68 LWFRDIIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAYFHSAMSPNIELGGV 127
+W+RD++ E+T G HT V+ G G +LF+VSE++ F A FWA HS+++P +E+GG+
Sbjct: 59 VWWRDVLRESTLEGHHTKVVQLGPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGI 118
Query: 128 WPPVGIQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALSGLLITFWLIVIFVT 187
WPP GI+ + P E+P LNT IL SSGA +T++HH ++ G K A+ L+ T L ++F
Sbjct: 119 WPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTG 178
Query: 188 CQYIEYTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTATHHVGY 247
Q +EY A FTI+D +YGS F+ TG H H+++ L I R HLT HHVG+
Sbjct: 179 FQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGF 238
Query: 248 ETTVLYCHILDIIWLFLYIVFYWWG 272
E Y H +D++WLFL++ YWWG
Sbjct: 239 EAAAWYWHFVDVVWLFLFVSIYWWG 263
>CEMi004 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 255
Score = 188 bits (477), Expect = 8e-48
Identities = 88/218 (40%), Positives = 127/218 (57%), Gaps = 3/218 (1%)
Query: 54 LIYLSILTVTLSATLWFRDIIAEATYLGDHTIAVRKGINLGFLLFVVSEILIFAALFWAY 113
L ++ +V + W +DI E G H V G G +LFV SE + F +FW +
Sbjct: 39 LFIFTLFSVLFISFAWGKDIAMEGLS-GYHNFFVMDGFKFGVILFVFSEFMFFFCIFWTF 97
Query: 114 FHSAMSPNIELGGVWPPVGIQAVQPTELPLLNTIILLSSGATITYSHHGLVGGNRKNALS 173
F +A+ P ELG W P G+ V P +PLLNTIILLSSG T+T++HH L+ + K+ +
Sbjct: 98 FDAALVPVHELGETWSPFGMHLVNPFGVPLLNTIILLSSGVTVTWAHHSLL--SNKSCTN 155
Query: 174 GLLITFWLIVIFVTCQYIEYTNATFTITDGVYGSVFYAGTGLHFLHMVMLAAMLGINYWR 233
+++T L F Q +EY A+F+I DGV+GS+FY TG H +H++ L N+ R
Sbjct: 156 SMILTCLLAAYFTGIQLMEYMEASFSIADGVFGSIFYLSTGFHGIHVLCGGLFLAFNFLR 215
Query: 234 LRNYHLTATHHVGYETTVLYCHILDIIWLFLYIVFYWW 271
L H HH+G E +LY H +D++WLFL++ YWW
Sbjct: 216 LLKNHFNYNHHLGLEFAILYWHFVDVVWLFLFVFVYWW 253
>Hs22056976 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 118
Score = 62.4 bits (150), Expect = 7e-10
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 163 LVGGNRKNALSGLLITFWLIVIFVTCQYIEYTNATFTITDGVYGSVFYAGTGLHFLHMVM 222
L+ G+RK L L IT L + + EY A F I+ G+YGS F+ TG L++++
Sbjct: 30 LIEGSRKQILQALAITITLGIYATLLRVSEYFEAPFPISHGLYGSTFFTATGFPGLYVII 89
Query: 223 LAAMLGINYWRLRNYHLTATHHVGYETT 250
+ +L I +H T+ HH G+E T
Sbjct: 90 ESTLLTIRLLCQLKFHFTSNHHFGFEAT 117
>Hs22051424_2 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 77
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/67 (41%), Positives = 38/67 (55%), Gaps = 1/67 (1%)
Query: 183 VIFVTCQYIEYTNATFTITD-GVYGSVFYAGTGLHFLHMVMLAAMLGINYWRLRNYHLTA 241
V F Q EY FTI+D G+YGS F+ TG H LH+++ + L I R +H T+
Sbjct: 7 VYFTLLQASEYFETPFTISDDGIYGSTFFVATGFHGLHVIIGSTFLTICLIRQLTFHFTS 66
Query: 242 THHVGYE 248
HH G+E
Sbjct: 67 KHHFGFE 73
>Hs22042472 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 144
Score = 53.1 bits (126), Expect = 4e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 114 FHSAMSPNIELGGVWPPVGIQAVQPTELPLLNTIILLSSGATITYSHHGLV 164
F + +P ELGG WPP I E+P LNT +LL+SG +IT++H L+
Sbjct: 48 FGNCPAPTPELGGCWPPTSISPPSLLEVPFLNTSVLLASGVSITWAHQSLI 98
>Hs18551186_2 [C] KOG4664 Cytochrome oxidase subunit III and related proteins
Length = 37
Score = 50.8 bits (120), Expect = 2e-06
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 91 INLGFLLFVVSEILIFAALFWAYFHSAMSPNIELGG 126
+ G +LF++SE+L+FA FWA++HS+++P ELGG
Sbjct: 1 VRYGTILFIISEVLLFAGFFWAFYHSSLAPTPELGG 36
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.331 0.144 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,048,148
Number of Sequences: 60738
Number of extensions: 569400
Number of successful extensions: 1453
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 11
length of query: 273
length of database: 30,389,216
effective HSP length: 105
effective length of query: 168
effective length of database: 24,011,726
effective search space: 4033969968
effective search space used: 4033969968
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)