ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0138.1 suspect: Pn PT KOG2301 Inorganic ion transport and metabolism Voltage-gated Ca2+ channels, alpha1 subunits
r_klactV0138.1 suspect: Pn PT KOG2301 Signal transduction mechanisms Voltage-gated Ca2+ channels, alpha1 subunits
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0138.1 48156 48524 123
(123 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs4506807 [PT] KOG2301 Voltage-gated Ca2+ channels alpha1 subunits 30 0.70
SPBC36B7.08c [L] KOG1508 DNA replication factor/protein phosphat... 27 5.9
YHR188c [MO] KOG2407 GPI transamidase complex GPI16/PIG-T compon... 26 7.7
CE28374 [R] KOG0379 Kelch repeat-containing proteins 26 7.7
CE26001 [EO] KOG1046 Puromycin-sensitive aminopeptidase and rela... 26 7.7
>Hs4506807 [PT] KOG2301 Voltage-gated Ca2+ channels alpha1 subunits
Length = 1836
Score = 29.6 bits (65), Expect = 0.70
Identities = 12/34 (35%), Positives = 17/34 (49%), Gaps = 3/34 (8%)
Query: 14 NSVWNAHLLTQSWQEDDQFNWVNIVSDQNQLSLL 47
N WN+H SW +D F+W +SD+ L
Sbjct: 321 NDTWNSHA---SWATNDTFDWDAYISDEGNFYFL 351
>SPBC36B7.08c [L] KOG1508 DNA replication factor/protein phosphatase inhibitor
SET/SPR-2
Length = 244
Score = 26.6 bits (57), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 35 VNIVSDQNQLSLLVFNQRDNVVQTVLNNVWL 65
+ I+ QN+L +F QR ++++T+ NN W+
Sbjct: 22 IEILKKQNELFQPLFEQRRDILKTI-NNFWV 51
>YHR188c [MO] KOG2407 GPI transamidase complex GPI16/PIG-T component
involved in glycosylphosphatidylinositol anchor
biosynthesis
Length = 610
Score = 26.2 bits (56), Expect = 7.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 3 NQSTQSCLTLDNSVWNAHLLTQSWQEDDQFNWVNIVSDQNQ 43
N+ T+ C +D S W A L N ++ +DQN+
Sbjct: 330 NRPTRICAEVDRSTWTAFLSVDDTIFSTHDNCFDLSNDQNE 370
>CE28374 [R] KOG0379 Kelch repeat-containing proteins
Length = 580
Score = 26.2 bits (56), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 5 STQSCLTLDNSVWNAHLLTQSWQEDDQ 31
+T + L N+VW L T SW++ DQ
Sbjct: 264 TTPTTAELHNNVWIFDLDTSSWEKSDQ 290
>CE26001 [EO] KOG1046 Puromycin-sensitive aminopeptidase and related
aminopeptidases
Length = 1815
Score = 26.2 bits (56), Expect = 7.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 2 VNQSTQSCLTLDNSVWNAHLLTQSWQEDDQFNW 34
V + QSC++ D ++WN L TQ+ D FNW
Sbjct: 1488 VQANQQSCMS-DETLWNVPLFTQTPGALD-FNW 1518
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.131 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,707,225
Number of Sequences: 60738
Number of extensions: 160340
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 5
length of query: 123
length of database: 30,389,216
effective HSP length: 99
effective length of query: 24
effective length of database: 24,376,154
effective search space: 585027696
effective search space used: 585027696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)