ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0163 good C KOG3049 Energy production and conversion Succinate dehydrogenase, Fe-S protein subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0163 58087 57326 -254
(254 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLL041c [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 444 e-125
Hs13639114 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 382 e-106
Hs9257242 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 382 e-106
SPAC140.01 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 381 e-106
7302306 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 376 e-104
CE01579 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 350 1e-96
7293531 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 349 2e-96
At5g40650 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 325 4e-89
At3g27380 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit 325 4e-89
>YLL041c [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 266
Score = 444 bits (1141), Expect = e-125
Identities = 207/254 (81%), Positives = 226/254 (88%), Gaps = 3/254 (1%)
Query: 2 FNAIIKRGLATEAKAVA---PRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDAL 58
F + K+G+AT A A PRLKTFK+YRW+PD P+ KP LQ YQVDLN CGPMVLDAL
Sbjct: 11 FCLVTKKGMATATTAAATHTPRLKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDAL 70
Query: 59 IKIKNEQDATLTFRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIV 118
+KIK+EQD+TLTFRRSCREGICGSCAMNIGGRNTLAC+C+IDQNE+KQ KIYPLPHM+IV
Sbjct: 71 LKIKDEQDSTLTFRRSCREGICGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIV 130
Query: 119 RDLVPDLTHFYKQYKSIQPYLQRSEVPADGKENLQSIADRKKLDGLYECILCACCSTSCP 178
+DLVPDLT+FY+QYKSIQPYLQRS P DG E LQSI DRKKLDGLYECILCACCSTSCP
Sbjct: 131 KDLVPDLTNFYQQYKSIQPYLQRSSFPKDGTEVLQSIEDRKKLDGLYECILCACCSTSCP 190
Query: 179 SYWWNQEQYLGPAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGL 238
SYWWNQEQYLGPAVLMQAYRWL+DSRD+A RK ML NSMSLYRCHTIMNCTRTCPKGL
Sbjct: 191 SYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNNSMSLYRCHTIMNCTRTCPKGL 250
Query: 239 NPGRAIAEIKKALA 252
NPG AIAEIKK+LA
Sbjct: 251 NPGLAIAEIKKSLA 264
>Hs13639114 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 280
Score = 382 bits (982), Expect = e-106
Identities = 176/243 (72%), Positives = 205/243 (83%), Gaps = 1/243 (0%)
Query: 11 ATEAKAVAPRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLT 70
A A A APR+K F IYRW PD+ +KP +Q Y+VDLN+CGPMVLDALIKIKNE D+TLT
Sbjct: 29 AQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLT 88
Query: 71 FRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYK 130
FRRSCREGICGSCAMNI G NTLAC RID N NK +KIYPLPHMY+++DLVPDL++FY
Sbjct: 89 FRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYA 148
Query: 131 QYKSIQPYLQRSEVPADGKEN-LQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYLG 189
QYKSI+PYL++ + +GK+ LQSI +R+KLDGLYECILCACCSTSCPSYWWN ++YLG
Sbjct: 149 QYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG 208
Query: 190 PAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIKK 249
PAVLMQAYRW++DSRD+ R LQ+ SLYRCHTIMNCTRTCPKGLNPG+AIAEIKK
Sbjct: 209 PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKK 268
Query: 250 ALA 252
+A
Sbjct: 269 MMA 271
>Hs9257242 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 280
Score = 382 bits (981), Expect = e-106
Identities = 176/243 (72%), Positives = 205/243 (83%), Gaps = 1/243 (0%)
Query: 11 ATEAKAVAPRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLT 70
A A A APR+K F IYRW PD+ +KP +Q Y+VDLN+CGPMVLDALIKIKNE D+TLT
Sbjct: 29 AQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLT 88
Query: 71 FRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYK 130
FRRSCREGICGSCAMNI G NTLAC RID N NK +KIYPLPHMY+++DLVPDL++FY
Sbjct: 89 FRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYA 148
Query: 131 QYKSIQPYLQRSEVPADGKEN-LQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYLG 189
QYKSI+PYL++ + +GK+ LQSI +R+KLDGLYECILCACCSTSCPSYWWN ++YLG
Sbjct: 149 QYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG 208
Query: 190 PAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIKK 249
PAVLMQAYRW++DSRD+ R LQ+ SLYRCHTIMNCTRTCPKGLNPG+AIAEIKK
Sbjct: 209 PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKK 268
Query: 250 ALA 252
+A
Sbjct: 269 MMA 271
>SPAC140.01 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 252
Score = 381 bits (979), Expect = e-106
Identities = 175/232 (75%), Positives = 201/232 (86%), Gaps = 2/232 (0%)
Query: 21 LKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLTFRRSCREGIC 80
LKTF+IYRW+P++P KP+LQ+Y VDL +CGPMVLDALIKIKNEQD TLTFRRSCREGIC
Sbjct: 21 LKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTLTFRRSCREGIC 80
Query: 81 GSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYKQYKSIQPYLQ 140
GSCAMNI G NTLAC+C I + +NK TKIYPLPH +IV+DLVPDLT+FYKQYKSI+P+LQ
Sbjct: 81 GSCAMNINGSNTLACICNI-KKDNKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQ 139
Query: 141 RSEVPADGKENLQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWL 200
+P D KE QS ADR KLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRW+
Sbjct: 140 NDNIPKD-KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWI 198
Query: 201 VDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIKKALA 252
+DSRD+A R ++QNSMS+YRCHTIMNC RTCPKGLNPG AIA++K +A
Sbjct: 199 IDSRDQATAKRLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKALMA 250
>7302306 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 297
Score = 376 bits (965), Expect = e-104
Identities = 172/245 (70%), Positives = 202/245 (82%), Gaps = 3/245 (1%)
Query: 11 ATEAKAVAPRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLT 70
A +A P++K F+IYRW+PD EKP +Q Y+VDL +CGPMVLDALIKIKNE D TLT
Sbjct: 36 AQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLT 95
Query: 71 FRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYK 130
FRRSCREGICGSCAMNIGG NTLAC+ +ID N +K K+YPLPHMY+VRDLVPD+ +FY+
Sbjct: 96 FRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYE 155
Query: 131 QYKSIQPYLQRSEVPADGK---ENLQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQY 187
QY++IQP+LQR + K + LQS+ DR KLDGLYECILCACCSTSCPSYWWN E+Y
Sbjct: 156 QYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKY 215
Query: 188 LGPAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEI 247
LGPAVLMQAYRW++DSRDE + R L++ S+YRCHTIMNCTRTCPKGLNPGRAIAEI
Sbjct: 216 LGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEI 275
Query: 248 KKALA 252
KK L+
Sbjct: 276 KKLLS 280
>CE01579 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 298
Score = 350 bits (898), Expect = 1e-96
Identities = 157/243 (64%), Positives = 198/243 (80%), Gaps = 1/243 (0%)
Query: 10 LATEAKAVAPRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATL 69
+A + K R+KTF+IYR++P+ P KP +Q++ VDL+QCG M+LDALIKIKNE D TL
Sbjct: 42 VAAKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTL 101
Query: 70 TFRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFY 129
TFRRSCREGICGSCAMNIGG+NTLAC+C+ID + +K TKIYPLPHM++V+DLVPD+ FY
Sbjct: 102 TFRRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFY 161
Query: 130 KQYKSIQPYLQRSEVPADGKENL-QSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYL 188
QY SIQP++Q+ G++ + QS+A+R +LDGLYECILCACCSTSCPSYWWN ++YL
Sbjct: 162 AQYASIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYL 221
Query: 189 GPAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIK 248
GPAVLMQAYRW++DSRD+ A R + +S S ++CHTIMNCT+TCPK LNP +AI EIK
Sbjct: 222 GPAVLMQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIK 281
Query: 249 KAL 251
L
Sbjct: 282 SLL 284
>7293531 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 398
Score = 349 bits (895), Expect = 2e-96
Identities = 164/243 (67%), Positives = 192/243 (78%), Gaps = 5/243 (2%)
Query: 11 ATEAKAVAPRLKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLT 70
A KA PRLKTF+IYRW +P ++P+ Q Y+VDL QCG MVLDALIKIKNE D TLT
Sbjct: 138 APPVKAKKPRLKTFEIYRW---KPGDQPQTQTYEVDLEQCGAMVLDALIKIKNEMDPTLT 194
Query: 71 FRRSCREGICGSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYK 130
FRRSCREGICGSCAMNI G NTLAC+ IDQNE+K +IYPLPH+Y+VRDLVPD++ FY
Sbjct: 195 FRRSCREGICGSCAMNINGTNTLACVSSIDQNESKCCRIYPLPHLYVVRDLVPDMSQFYD 254
Query: 131 QYKSIQPYLQRSEV--PADGKENLQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYL 188
QY+SIQP+LQR ++ A + LQS+ DR LDGLYECILCACC TSCPSYWWN +YL
Sbjct: 255 QYRSIQPWLQRKDLKREAGTAQYLQSVDDRLVLDGLYECILCACCQTSCPSYWWNSNKYL 314
Query: 189 GPAVLMQAYRWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIK 248
GPAVLMQAYRW++DSRDEA R L++ LYRCH+IMNCT TCPK LNP RAI ++K
Sbjct: 315 GPAVLMQAYRWVIDSRDEATEQRLDFLKDPWKLYRCHSIMNCTNTCPKHLNPARAIIQLK 374
Query: 249 KAL 251
+ L
Sbjct: 375 QLL 377
>At5g40650 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 280
Score = 325 bits (833), Expect = 4e-89
Identities = 153/231 (66%), Positives = 181/231 (78%), Gaps = 5/231 (2%)
Query: 21 LKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLTFRRSCREGIC 80
LKTF+IYRW+PD P KP LQ+Y++DL CGPMVLDALIKIKNE D +LTFRRSCREGIC
Sbjct: 48 LKTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 106
Query: 81 GSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYKQYKSIQPYLQ 140
GSCAMNI G N LACL +I+ +K+T I PLPHM++++DLV D+T+FY QYKSI+P+L+
Sbjct: 107 GSCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 165
Query: 141 RSEVPAD--GKENLQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYR 198
R PA GKE LQS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A R
Sbjct: 166 RKN-PASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR 224
Query: 199 WLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIKK 249
W+ DSRDE R + + + LYRCHTI+NC R CPKGLNPG+ I IK+
Sbjct: 225 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQ 275
>At3g27380 [C] KOG3049 Succinate dehydrogenase Fe-S protein subunit
Length = 279
Score = 325 bits (833), Expect = 4e-89
Identities = 155/232 (66%), Positives = 181/232 (77%), Gaps = 7/232 (3%)
Query: 21 LKTFKIYRWSPDRPAEKPRLQEYQVDLNQCGPMVLDALIKIKNEQDATLTFRRSCREGIC 80
LKTF+IYRW+PD P KP LQ YQ+DL CGPMVLDALIKIKNE D +LTFRRSCREGIC
Sbjct: 49 LKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 107
Query: 81 GSCAMNIGGRNTLACLCRIDQNENKQTKIYPLPHMYIVRDLVPDLTHFYKQYKSIQPYLQ 140
GSCAMNI G N LACL +I Q+E +T I PLPHM++++DLV D+T+FY QYKSI+P+L+
Sbjct: 108 GSCAMNIDGCNGLACLTKI-QDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 166
Query: 141 R---SEVPADGKENLQSIADRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAY 197
R + VPA KE LQS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A
Sbjct: 167 RKTPASVPA--KEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 224
Query: 198 RWLVDSRDEAAGIRKQMLQNSMSLYRCHTIMNCTRTCPKGLNPGRAIAEIKK 249
RW+ DSRDE R + + + LYRCHTI+NC R CPKGLNPG+ I IK+
Sbjct: 225 RWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQ 276
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,339,345
Number of Sequences: 60738
Number of extensions: 636553
Number of successful extensions: 1549
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 30,389,216
effective HSP length: 104
effective length of query: 150
effective length of database: 24,072,464
effective search space: 3610869600
effective search space used: 3610869600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)