ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0204.1    suspect: LH  DR    KOG2739   Cell cycle control, cell division, chromosome partitioning     Leucine-rich acidic nuclear protein
r_klactV0204.1    suspect: LH  DR    KOG2739   General function prediction only                               Leucine-rich acidic nuclear protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0204.1 75743  75874 44   
         (44 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs18584067 [DR] KOG2739 Leucine-rich acidic nuclear protein            28   3.2  
SPBC887.20c [E] KOG0623 Glutamine amidotransferase/cyclase             26   9.2  

>Hs18584067 [DR] KOG2739 Leucine-rich acidic nuclear protein
          Length = 223

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 4   WRDTFFVLNLRLDVIDGVGRFDFQSDGLTSQGFD 37
           +R+  F L L+L  +DG  R D ++  L ++G+D
Sbjct: 139 YRENVFKLLLQLTYLDGYDRDDKEAPNLDAEGYD 172


>SPBC887.20c [E] KOG0623 Glutamine amidotransferase/cyclase
          Length = 512

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 17 VIDGVGRFDFQSDGLTSQGFDENL 40
          +  GVG F F  D L  QGF E L
Sbjct: 14 IFPGVGNFGFVCDSLAKQGFLEPL 37


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.327    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,676,786
Number of Sequences: 60738
Number of extensions: 66177
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 2
length of query: 44
length of database: 30,389,216
effective HSP length: 20
effective length of query: 24
effective length of database: 29,174,456
effective search space: 700186944
effective search space used: 700186944
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)