ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0267 good OU KOG1239 Intracellular trafficking, secretion, and vesicular transport Inner membrane protein translocase involved in respiratory chain assembly
r_klactV0267 good OU KOG1239 Posttranslational modification, protein turnover, chaperones Inner membrane protein translocase involved in respiratory chain assembly
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0267 99586 98426 -387
(387 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER154w [OU] KOG1239 Inner membrane protein translocase involved... 370 e-102
Hs4826880 [OU] KOG1239 Inner membrane protein translocase involv... 147 3e-35
7294793 [OU] KOG1239 Inner membrane protein translocase involved... 130 4e-30
At2g46470 [OU] KOG1239 Inner membrane protein translocase involv... 119 1e-26
SPAC9G1.04 [OU] KOG1239 Inner membrane protein translocase invol... 111 2e-24
SPBC1346.02c [OU] KOG1239 Inner membrane protein translocase inv... 107 4e-23
CE07785 [OU] KOG1239 Inner membrane protein translocase involved... 100 4e-21
At5g62050 [OU] KOG1239 Inner membrane protein translocase involv... 96 9e-20
7294995 [OU] KOG1239 Inner membrane protein translocase involved... 67 6e-11
At1g65080 [OU] KOG1239 Inner membrane protein translocase involv... 56 8e-08
>YER154w [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 402
Score = 370 bits (951), Expect = e-102
Identities = 178/341 (52%), Positives = 247/341 (72%), Gaps = 13/341 (3%)
Query: 59 EIQTQLPSFDE----------NTIETVSQVGQVIGDASNQIGYLSSIGMAKSWLWPPDLI 108
EIQTQLPS DE +T + ++ Q +G+ S+ IGYL+SIG+A++W WP D+I
Sbjct: 54 EIQTQLPSIDELTSSAPSLSASTSDLIANTTQTVGELSSHIGYLNSIGLAQTWYWPSDII 113
Query: 109 QNVMEQIHFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKIKPEMDKVNADLMA 168
Q+V+E +H Y+GLPWW TI TT+L R L+FPLYVK SDT+ R S IKPE+D +N LM+
Sbjct: 114 QHVLEAVHVYSGLPWWGTIAATTILIRCLMFPLYVKSSDTVARNSHIKPELDALNNKLMS 173
Query: 169 CSDTTKAQQIAMKRRKLLSENGIKNRYLIVPVVQIPIAISFFTSIREMCLYPVDGLATQG 228
+D + Q +AM+R+KLLS +GIKNR+L P++QIPIA+ FF ++R M YPVDG A QG
Sbjct: 174 TTDLQQGQLVAMQRKKLLSSHGIKNRWLAAPMLQIPIALGFFNALRHMANYPVDGFANQG 233
Query: 229 IAWFQNLTLADPYLGLQCLTAAMFVALARKGGESGAQQFSPQMKKVFTYLPILTIPVTMN 288
+AWF +LT ADPYLGLQ +TAA+F++ R GGE+GAQQFS MK++FT LPI++IP TMN
Sbjct: 234 VAWFTDLTQADPYLGLQVITAAVFISFTRLGGETGAQQFSSPMKRLFTILPIISIPATMN 293
Query: 289 LSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIAEVVNHPAP---ENQGPQKGVFESFR 345
LS+ VVLY A NG S++QT++LRN+ R L I EV P + G+F+S +
Sbjct: 294 LSSAVVLYFAFNGAFSVLQTMILRNKWVRSKLKITEVAKPRTPIAGASPTENMGIFQSLK 353
Query: 346 ENIQKAKDQAEKRAMMKEQDDKMKDLAKKEKENQRIKIVRK 386
NIQKA+DQAE+R +M++ + K+++ K++++N +IKIV K
Sbjct: 354 HNIQKARDQAERRQLMQDNEKKLQESFKEKRQNSKIKIVHK 394
>Hs4826880 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 495
Score = 147 bits (370), Expect = 3e-35
Identities = 100/320 (31%), Positives = 156/320 (48%), Gaps = 13/320 (4%)
Query: 59 EIQTQLPSFDENTIETVSQVGQVIGDASNQIGYLSSIGMAKSWLW---PPDLIQNVMEQI 115
E+Q Q P T + G+ ++ + + A+ L P LIQN++E +
Sbjct: 133 EVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFM 192
Query: 116 HFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKIKPEMDKVNA---DLMACSDT 172
H GLPWW I TV AR L+FPL V R PE+ K ++ + D
Sbjct: 193 HVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDH 252
Query: 173 TKAQQIAMKRRKLLSENGIK-NRYLIVPVVQIPIAISFFTSIREMCLYPVDGLATQGIAW 231
+ + + + ++GIK + LI+PV Q PI ISFF ++REM PV L T G+ W
Sbjct: 253 IEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWW 312
Query: 232 FQNLTLADPYLGLQCLTAAMFVALARKGGESGAQQFSPQ-MKKVFTYLPILTIPVTMNLS 290
FQ+LT++DP L A A+ G E+G Q Q M+ V +P++T+P+TM+
Sbjct: 313 FQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFP 372
Query: 291 AGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIAEVVNHPAPENQGPQKGVFESFRENIQK 350
V +Y + + S++Q LR R L I + V H + P++G ESF+ K
Sbjct: 373 TAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDL-DKLPPREGFLESFK----K 427
Query: 351 AKDQAEKRAMMKEQDDKMKD 370
AE ++E++ +M++
Sbjct: 428 GWKNAEMTRQLREREQRMRN 447
>7294793 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 426
Score = 130 bits (326), Expect = 4e-30
Identities = 88/315 (27%), Positives = 147/315 (45%), Gaps = 29/315 (9%)
Query: 79 GQVIGDASNQIGYLSSIGMAKSWLWPPDLIQNVMEQIHFYAGLPWWATICVTTVLARVLL 138
G + D N G S + P ++QN +E +H +PWW TI + T+ R ++
Sbjct: 93 GLNVMDVMNAAGEPSFASIGLGGWSPVGMVQNCLEFLHCTWDIPWWGTIAIGTLAVRTII 152
Query: 139 FPLYVKYSDTLGRTSKIKPEMDKVNADLMACSDTTKAQQIAMKRRKLL------SENGIK 192
FPL + + + P+M + + + A + A ++++ N +K
Sbjct: 153 FPLVILAQRNSAKMNNNMPQMQMLQLKMTEARQSGNAIESARYAQEMMLFMREKGVNPLK 212
Query: 193 NRYLIVPVVQIPIAISFFTSIREMCLYPVDGLATQGIAWFQNLTLADPYLGLQCLTAAMF 252
N ++VP+ Q P+ ISFF +R+M PV+ + G+ WF +LT+ADP+ L +T+A
Sbjct: 213 N--MVVPLAQAPLFISFFMGLRQMANAPVESMRDGGLFWFTDLTMADPFYLLPLITSATL 270
Query: 253 VALARKGGESGAQQFSPQ--MKKVFTYLPILTIPVTMNLSAGVVLYLAVNGVCSMIQTLL 310
G +S + MK V LPI+ P TMN A ++ Y A + S+ Q +
Sbjct: 271 YLTIEIGTDSARLSAANMNTMKYVLRALPIVIFPFTMNFPAAILTYWACSNFISLGQVAV 330
Query: 311 LRNQTARKFLNIAEVVNHPAPENQGPQKGVFESFRENIQKAKDQAEKRAMMKEQDDKMKD 370
LR + R++ I +++ H AP P+KG MKE D MK
Sbjct: 331 LRIPSVREYFKIEKMLTH-APSALPPKKGFVGG-----------------MKESWDNMK- 371
Query: 371 LAKKEKENQRIKIVR 385
++K+ +E QR+ +R
Sbjct: 372 ISKEIEERQRLDEIR 386
>At2g46470 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 431
Score = 119 bits (297), Expect = 1e-26
Identities = 87/325 (26%), Positives = 156/325 (47%), Gaps = 13/325 (4%)
Query: 69 ENTIETVSQVGQVIGDASNQIGYLSSIGMAKSWLWPPDLIQNVMEQIHFYAGLPWWATIC 128
+ IE V+ Q + A N++ +I A S +P +Q++++ +H + GL WWA+I
Sbjct: 106 DEIIEAVTTTSQAVVPAINEV----AIAAADS-AFPVAALQHLIDAVHSFTGLNWWASIA 160
Query: 129 VTTVLARVLLFPLYVKYSDTLGRTSKIKPEMDKVNADLMACSDTTKAQQIAMKRRKLL-S 187
+TTVL R + P+ + + + ++P+++++ ++ + +A +R +LL
Sbjct: 161 LTTVLIRGVTIPILLNQLKATYKLNVLRPQLEELRQEMSTKAQDPEAMAEGQRRMQLLFK 220
Query: 188 ENGIKN-RYLIVPVVQIPIAISFFTSIREMCLYPVDGLATQGIAWFQNLTLADPYLGLQC 246
E+G+ L ++Q PI ISFF +IR M V T G WF +LT D L
Sbjct: 221 EHGVTPFTPLKGLIIQGPIFISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTYILPL 279
Query: 247 LTAAMFVALARKGGESGAQ--QFSPQMKKVFTYLPILTIPVTMNLSAGVVLYLAVNGVCS 304
LTA F+ + + G + + MKK + L+IPV + + + Y + + +
Sbjct: 280 LTAVTFLIMVESNMQEGLEGNPVAGTMKKFSRIIAFLSIPVLIGIEKALFCYWLTSNLFT 339
Query: 305 MIQTLLLRNQTARKFLNIAEVVNHPAPENQGPQKGVFESFRENIQKAKDQAEKRAMMKEQ 364
++ L LR RK LN+ +VVN + P + SF E ++ EK M E
Sbjct: 340 LVYGLTLRRPDVRKLLNLPDVVN-SSTRQPSPSSPLPFSFAEPKDQSVVAQEKPPMSSES 398
Query: 365 DDKMKD--LAKKEKENQRIKIVRKK 387
+ D +++ NQRI+ + ++
Sbjct: 399 SSSVPDRRISRSSVLNQRIRTLERQ 423
>SPAC9G1.04 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 374
Score = 111 bits (278), Expect = 2e-24
Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 28/316 (8%)
Query: 96 GMAKSWLWPPDLIQNVMEQIHFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKI 155
G SW WP LIQN I+ YAG PWW +I +TT+ R+ L P+ + + S I
Sbjct: 60 GFNPSW-WPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVI 118
Query: 156 KPEMDK-VNADLMACSDTTKAQQIAMKRRKL------LSENGIKNRYLIVPVVQIPIAIS 208
+PEM K + A A D Q+A+ + + L N I+P+ Q + S
Sbjct: 119 QPEMKKELEAIKTAKLDN---DQLALNQHSIALRGIYLKHNVNPFAIFILPLTQSAVFFS 175
Query: 209 FFTSIREMCLYPVDGLATQGIAWFQNLTLADPYLGLQCLTAA-MFVALARKGGESGAQQF 267
FF +IR+M VDG T G+AWF++L++ DPY L + A MF + + +
Sbjct: 176 FFYAIRKMSRLSVDGFTTGGLAWFKDLSIPDPYCILPIINAGLMFSGMQMNRANTASTIG 235
Query: 268 SPQMKKVFTYLPILTIP-VTMNLSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIA--- 323
+ + F +L L P +T L A + +Y + + +++Q +L+N R L A
Sbjct: 236 NSTNWRTFFFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAPLP 295
Query: 324 ----------EVVNHPAPENQGPQKGVFESFRENIQKAKDQAEKRAMMKEQDDKMKDLA- 372
++ +P + KGV + F+ ++ + +RA+ ++ +
Sbjct: 296 SIIEKQPSGFTLITNPIKSLKEFYKGVRDGFKTQYEQLQKDVSRRAVATTSASTIRPNSH 355
Query: 373 -KKEKENQRIKIVRKK 387
KK KE R K KK
Sbjct: 356 YKKLKELNRSKKNSKK 371
>SPBC1346.02c [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 409
Score = 107 bits (266), Expect = 4e-23
Identities = 76/276 (27%), Positives = 130/276 (46%), Gaps = 17/276 (6%)
Query: 92 LSSIGMAKSWLWPPDLIQNVMEQIHFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGR 151
LSS +A P +++QN + +H ++GLPWWA+I V R+ +FP+ +K T +
Sbjct: 84 LSSSVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAK 143
Query: 152 TSKIKPEMDKVNADLMACSDTTKAQ-------QIAMKRRKLLSENGIKNRYLI-VPVVQI 203
+ I P++ A+ M+ KA+ Q + + L N + L+ PV Q
Sbjct: 144 LAIINPKV----AEHMSVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQG 199
Query: 204 PIAISFFTSIREMCLYPVDGLATQGIAWFQNLTLADPYLGLQCLTAAMFVALARKGGESG 263
+ ISFF +++ M PV+G G W +L+ DP + + G E+G
Sbjct: 200 ILFISFFYALKTMAGVPVEGFTDGGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETG 259
Query: 264 AQQ--FSPQMKKVFTYLPILTIPVTMNLSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLN 321
+ + SP MKK F +L + + TMN + +Y + V S+ Q LR+ T R L
Sbjct: 260 SNKVAMSPSMKKFFRFLCLASPLFTMNFPMAIFMYWFPSNVFSVFQGAFLRSSTIRHKLG 319
Query: 322 IAEVVN-HPAPENQGPQKGVFESFRENIQKAKDQAE 356
+ EV + P P Q + +SF + + +++ +
Sbjct: 320 LPEVPSAMPVPNAQ--NESFVKSFTDIVHGVQEKGK 353
>CE07785 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 352
Score = 100 bits (249), Expect = 4e-21
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 9/238 (3%)
Query: 101 WLW--PPDLIQNVMEQIHFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKIKPE 158
W W P + +E IH + +PWW TI TV R LL + V + + S + E
Sbjct: 82 WTWWKPSSYFRWALESIHVHLDIPWWVTIVAATVTLRALLIGVPVMSQKLVAKQSMYRKE 141
Query: 159 MDKVNADLMAC---SDTTKAQQIAMKRRKLLSENGIK-NRYLIVPVVQIPIAISFFTSIR 214
M++ + ++ QQI +++R L I+ R +V + + F +I+
Sbjct: 142 MNEFRDRIDEARKENNQLLQQQILLEQRDFLRSKDIRLGRQFMVMAANGAVFATQFFAIK 201
Query: 215 EMCLYPVDGLATQGIAWFQNLTLADPYLGLQCLTAAMFVALARKGGESG--AQQFSPQMK 272
+M + GL+T G WF +LT DPY L ++AA + + G E G A Q P M+
Sbjct: 202 KMVVVNYPGLSTGGTLWFTDLTATDPYYALPFISAATMALVTKVGIEMGTSADQMPPIMR 261
Query: 273 KVFTY-LPILTIPVTMNLSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIAEVVNHP 329
TY LP++ V+ + G+ +Y + S+I + RK I VV P
Sbjct: 262 AFMTYGLPVVIFGVSSQFATGLCVYWTASNAVSLIYAAAFKVDAIRKIFGIPPVVPLP 319
>At5g62050 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 429
Score = 95.9 bits (237), Expect = 9e-20
Identities = 70/308 (22%), Positives = 134/308 (42%), Gaps = 20/308 (6%)
Query: 65 PSFDENTIETVSQVGQVIGDASNQ------IGYLSSIGMAKS-WLWPPDLIQNVMEQIHF 117
P I +S + +VI D++ Q +S + +A + +P +Q ++ +H
Sbjct: 87 PGVGSEKIGVMSDIAEVITDSTLQDVPAQAAAAVSEVTLAAADSFFPIAALQQCIDMVHT 146
Query: 118 YAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKIKPEMDKVNADLM-ACSDTTKAQ 176
+ G WWA+I V T+L R PL +K + + ++P ++ + ++ D+
Sbjct: 147 FTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLALMRPRLESIREEMQNKGMDSVTMA 206
Query: 177 QIAMKRRKLLSENGIKNRYLIVPV----VQIPIAISFFTSIREMCLYPVDGLATQGIAWF 232
+ K + L E G+ P+ +Q P+ I FF +IR M V T G WF
Sbjct: 207 EGQKKMKNLFKEYGVTP---FTPMKGMFIQGPLFICFFLAIRNMA-EKVPSFQTGGALWF 262
Query: 233 QNLTLADPYLGLQCLTAAMFVALARKGGESGAQ--QFSPQMKKVFTYLPILTIPVTMNLS 290
+LT D L +T F+ + G + + +K V +LT+P+TM+
Sbjct: 263 TDLTTPDSLYILPVITGLTFLITVECNAQEGMEGNPMAGTVKTVCRVFALLTVPMTMSFP 322
Query: 291 AGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIAEVVNHPAPENQGPQKGVFESFRENIQK 350
+ Y + + S++ L+++ +K L I ++ P P Q P +F + ++
Sbjct: 323 QAIFCYWITSNLFSLMYGLVIKRPQVKKMLRIPDL--PPPPPGQQPSFDLFSALKKMKAM 380
Query: 351 AKDQAEKR 358
+D + +
Sbjct: 381 TQDHTQNQ 388
>7294995 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 351
Score = 66.6 bits (161), Expect = 6e-11
Identities = 65/274 (23%), Positives = 117/274 (41%), Gaps = 40/274 (14%)
Query: 82 IGDASNQIGYLSSIGMAKSWLWPPDLIQNVMEQIHFYAGLPWWATICVTTVLAR-VLLFP 140
+ +A +GY ++ + P +Q+V+ +IH Y+GLPWWA+I ++T L R V+ P
Sbjct: 49 LANAGGLVGYWQTLSNST----PVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSVVTLP 104
Query: 141 LYVKYSDTLGRTSKIKPEMDKVNADLMACSDTTKAQ-QIAMKRRKLLSENGIKNRY---- 195
L + R KI EM + +L + K + + + K+ +++ IK ++
Sbjct: 105 LTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQIVYRRSIKKQWQNLI 164
Query: 196 ----------LIVPVVQIPIAISFFTSIREMCLYPVDGLATQ-----------GIAWFQN 234
+IV QIP+ I ++R + D + Q G W N
Sbjct: 165 VRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLPDPTSIQAQIVTTEMTIGGFGWIPN 224
Query: 235 LTLAD------PYLGLQCLTAAMFVALARKGGESGAQQFSPQMKKVFTYLPILTIPVTMN 288
LT+ D LGL L A++R + Q + VF L ++ +PV
Sbjct: 225 LTVVDNSYILPVALGLINLAIIEVQAMSRTRPSTRLQNIA---NNVFRGLSVVMVPVACT 281
Query: 289 LSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLNI 322
+ + + +Y + + Q LL+ + R+ + I
Sbjct: 282 VPSALCVYWVASSSFGLAQNLLILSPEVRRSVGI 315
>At1g65080 [OU] KOG1239 Inner membrane protein translocase involved in
respiratory chain assembly
Length = 525
Score = 56.2 bits (134), Expect = 8e-08
Identities = 69/294 (23%), Positives = 119/294 (40%), Gaps = 32/294 (10%)
Query: 108 IQNVMEQIHFYAGLPWWATICVTTVLARVLLFPLYVKYSDTLGRTSKIKPEMDKVNADLM 167
+ + +E H + GLPWW I +TV R+ L PL + L S++ P++ +
Sbjct: 83 VVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTISELLPKLPMPIPETP 142
Query: 168 ACSDTTKAQQIAMKRRKLLSENGIKNRYLIVPV--VQIPIAISFFTSIREMCLYPVDGLA 225
+ +K + + G + P VQ+P SIR+M L G
Sbjct: 143 TLKGSIDQFSHFLKESRAI---GCPSFLWFFPYLSVQLPCFFLLMASIRKMSLDGHPGFD 199
Query: 226 TQGIAWFQNLT-LADPYLG--LQCLTAAM-FVALARKGGESGAQQFSP----QMKKVFTY 277
+ G+ WFQNL+ L G L A ++ + S +Q + M+ Y
Sbjct: 200 SGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGLTGLLMRYYKLY 259
Query: 278 LPILTIP---VTMNLSAGVVLYLAVNGVCSMIQTLLLRNQTARKFLNIAEVVNHPAPENQ 334
L IL++P V + G ++Y N ++ Q L L++ T L + +Q
Sbjct: 260 LEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL---------SQ 310
Query: 335 GPQKGVFESFR--ENIQKAKDQAEKRAMMKEQDDKMKDLAKKEKENQRIKIVRK 386
G G+ S E++ K D KEQ ++ L +E + ++++ K
Sbjct: 311 GATPGMGHSMEISESVIKYVDSDS-----KEQTLSLQTLTPEELLSLSVQVLSK 359
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,798,589
Number of Sequences: 60738
Number of extensions: 745242
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3373
Number of HSP's gapped (non-prelim): 11
length of query: 387
length of database: 30,389,216
effective HSP length: 108
effective length of query: 279
effective length of database: 23,829,512
effective search space: 6648433848
effective search space used: 6648433848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)