ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0401 suspect: LH L KOG2134 Replication, recombination and repair Polynucleotide kinase 3' phosphatase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0401 140275 139571 -235
(235 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR156c [L] KOG2134 Polynucleotide kinase 3' phosphatase 159 2e-39
SPAC23C11.04c [L] KOG2134 Polynucleotide kinase 3' phosphatase 75 6e-14
>YMR156c [L] KOG2134 Polynucleotide kinase 3' phosphatase
Length = 238
Score = 159 bits (403), Expect = 2e-39
Identities = 101/249 (40%), Positives = 133/249 (52%), Gaps = 33/249 (13%)
Query: 5 THKLTILPHIIKWVPKDPAPVR------KVISFDLDHTVIKPVKGR--FSRTSDDWIFMK 56
+HKLTILP +IK+ PK P + V +FDLDHT+IKP FSR++ DW F+
Sbjct: 2 SHKLTILPFLIKFTPKFPQSIDHDEHGLNVYAFDLDHTIIKPKSPNISFSRSASDWQFIN 61
Query: 57 YG-KTEVLAKLSAQMKETPDFHIVFFSNQGGVVSEPRTSKSCVKHVDKICKVLKYIS--E 113
+ K L L + P IV FSNQGGV++ PRTSKSC K+ +KI LK I E
Sbjct: 62 FNSKKSTLDYLCNIIDNDPTAVIVIFSNQGGVITVPRTSKSCTKYTNKILLFLKAIKNDE 121
Query: 114 NDSQLCDRIWIYCATKKPASLFGGSKAASTAHANKVVKNIISGQKKRINGTMVTPEMFDN 173
L R+W+Y A K+P + + A + N P +F+
Sbjct: 122 RGETLSHRLWLYAAPKRPKTFAANHSKITFASLGESYNN--------------DPNIFEK 167
Query: 174 VRKPNRGLFDEFLKDSD------EQSDSIEL--LFYCGDAAGRPNDFSDSDKEFAKILGV 225
VRKP G+ + F +D + EQ I+L ++YCGDAAGR DFSDSD +FA+ L V
Sbjct: 168 VRKPMTGMVEFFKRDLESAYRVSEQISPIKLNWIYYCGDAAGRKKDFSDSDIKFAENLHV 227
Query: 226 PFKVPEEYF 234
FK PEE F
Sbjct: 228 EFKYPEEIF 236
>SPAC23C11.04c [L] KOG2134 Polynucleotide kinase 3' phosphatase
Length = 421
Score = 75.5 bits (184), Expect = 6e-14
Identities = 59/211 (27%), Positives = 93/211 (43%), Gaps = 58/211 (27%)
Query: 26 RKVISFDLDHTVIKPVKGR-FSRTSDDWIFMKYGKTEVLAKLSAQMKETPDFHIVFFSNQ 84
+K I+FDLD T+IK GR FS+ + DW + V+ KL A ++ ++ +V FSNQ
Sbjct: 68 KKFIAFDLDGTLIKTKSGRVFSKDAADWTWWH---PSVVPKLKALYQD--NYSLVIFSNQ 122
Query: 85 GGVVSEPRTSKSCVKHVDKICKVLKYISENDSQLCDRIWIYCATKKPASLFGGSKAASTA 144
G+ +P + + I + L I +Y A K
Sbjct: 123 NGIPRKPSAGHTFQMKIRAIFESLDL----------PIVLYAAILK-------------- 158
Query: 145 HANKVVKNIISGQKKRINGTMVTPEMFDNVRKPNRGLFDEFLKDSDEQSDSIELLFYCGD 204
D RKP G+++ FLKD + D + + Y GD
Sbjct: 159 ---------------------------DKFRKPLTGMWNSFLKDVNRSID-LSFIKYVGD 190
Query: 205 AAGRPNDFSDSDKEFAKILGVPFKVPEEYFI 235
AAGRP D + +D +FA+ +G+ F+ PE++F+
Sbjct: 191 AAGRPGDHNSTDLKFAENIGIKFETPEQFFL 221
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,166,799
Number of Sequences: 60738
Number of extensions: 639087
Number of successful extensions: 1520
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 30,389,216
effective HSP length: 103
effective length of query: 132
effective length of database: 24,133,202
effective search space: 3185582664
effective search space used: 3185582664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)