ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0404 good R KOG4727 General function prediction only U1-like Zn-finger protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0404 140505 141062 186
(186 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL098c [R] KOG4727 U1-like Zn-finger protein 174 5e-44
Hs21389511 [R] KOG4727 U1-like Zn-finger protein 59 3e-09
7292469 [R] KOG4727 U1-like Zn-finger protein 59 5e-09
CE00458_2 [R] KOG4727 U1-like Zn-finger protein 57 1e-08
>YDL098c [R] KOG4727 U1-like Zn-finger protein
Length = 194
Score = 174 bits (442), Expect = 5e-44
Identities = 88/195 (45%), Positives = 135/195 (69%), Gaps = 13/195 (6%)
Query: 2 SFGRRTWNREEYAAKAATSPGGQSHLSSLDQEQLKALKDRYTDYNALLEYNLRDINKKTL 61
+FGRRTW+REEYA +A + +S ++L +L+ALK +YT+Y+ L++ +L+D+NK+ L
Sbjct: 3 NFGRRTWDREEYAEQARSGYDDRSLKATLTPIELQALKSKYTNYDHLIKGSLKDLNKRKL 62
Query: 62 SAN---LSQQKKGKQFGFYCDICDLTFKDTLQFINHLNHKSHVVRFENIFNEPLIKDTRD 118
+AN LS K+GK+FGFYCDIC+LTFKDTLQ+I+HLNHK H ++FEN+F+EPLI D RD
Sbjct: 63 TANTESLSSFKRGKKFGFYCDICNLTFKDTLQYIDHLNHKVHAIKFENLFDEPLIIDIRD 122
Query: 119 NDLVPLNEVRSQFHKSVSAFIGDTELRSNKRKAAKR-------VKCEKSDAEIKYQPQSE 171
ND VP E +H + F+ E+RS + ++ ++ K +K + + +S+
Sbjct: 123 NDDVPQEEFELCYHNLIKDFV---EVRSMETQSKRKRLLDTDVEKAKKVATKPSIESESK 179
Query: 172 IGRLMGFTEFGSSKK 186
+ ++MGF+ F +SKK
Sbjct: 180 VSQMMGFSNFATSKK 194
>Hs21389511 [R] KOG4727 U1-like Zn-finger protein
Length = 199
Score = 59.3 bits (142), Expect = 3e-09
Identities = 46/192 (23%), Positives = 87/192 (44%), Gaps = 17/192 (8%)
Query: 5 RRTWNREEY---AAKAATSPGGQSHLSSLDQEQLKALKDRYTDYNALLEYNLRDINKKTL 61
RR W+++EY A K T + + + + L+ R DY LE L +
Sbjct: 13 RRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHR--DYKVDLESKLG--KTIVI 68
Query: 62 SANLSQQKKGKQFGFYCDICDLTFKDTLQFINHLNHKSH------VVRFENIFNEPLIKD 115
+ Q + G G+YC++CD KD++ F++H+N K H +R E + + K
Sbjct: 69 TKTTPQSEMG---GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKR 125
Query: 116 TRDNDLVPLNEVRS-QFHKSVSAFIGDTELRSNKRKAAKRVKCEKSDAEIKYQPQSEIGR 174
N + + F + + + E +K ++ K +++ ++ ++ E+
Sbjct: 126 FEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAA 185
Query: 175 LMGFTEFGSSKK 186
+MGF+ FGS+KK
Sbjct: 186 VMGFSGFGSTKK 197
>7292469 [R] KOG4727 U1-like Zn-finger protein
Length = 194
Score = 58.5 bits (140), Expect = 5e-09
Identities = 57/200 (28%), Positives = 86/200 (42%), Gaps = 34/200 (17%)
Query: 5 RRTWNREEYAAKAATSPGGQSHLSSLDQEQLKALKDRYTDYNALLEYNLRD---INKKTL 61
RR W++ EY AA Q + Q + LK R DY L+ L INK T
Sbjct: 9 RRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRR--DYKVDLDSKLGKSVVINKNTP 66
Query: 62 SANLSQQKKGKQFGFYCDICDLTFKDTLQFINHLNHKSH--------------VVRFENI 107
++ G+YC++CD KD++ F++H+N K H V + +
Sbjct: 67 TSQSG--------GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTVDQVKER 118
Query: 108 FNEPLIK-DTRDNDLVPLNEVRSQFHKSVSAFIGDTELRSNKRKAAKRVKCEKSDAEIKY 166
F + K + + D E+ + ++ E R KRK KR K E +D E
Sbjct: 119 FQQNKKKMEEKQKDY----ELERRLREAKEEEDRYKEHRKEKRKERKR-KAEDTDFESGG 173
Query: 167 QPQSEIGRLMGFTEFGSSKK 186
P ++ +MGF+ FG SKK
Sbjct: 174 MP-DDMAAIMGFSGFGGSKK 192
>CE00458_2 [R] KOG4727 U1-like Zn-finger protein
Length = 211
Score = 57.4 bits (137), Expect = 1e-08
Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 39/211 (18%)
Query: 5 RRTWNREEYAAKAATSPGGQSHLSSL-------DQEQLKALKDRYTDYNALLEYNLRD-- 55
RRTW+ +EY+ A + + D+ ++K + +Y L+ +
Sbjct: 11 RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGKSV 70
Query: 56 -INKKTLSANLSQQKKGKQFGFYCDICDLTFKDTLQFINHLNHKSH-------------- 100
I K T SA GFYCD+CD KD++ F++H+N K+H
Sbjct: 71 VITKATPSAETG--------GFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKST 122
Query: 101 VVRFENIFNEPLIKDTRDND-----LVPLNEVRSQFHKSVSAFIGDTELRSNKRKAAKRV 155
V F L+KD ++ + + L E + ++ F D + + KRK R
Sbjct: 123 VADVRERFK--LMKDKKEREKKEAQVEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRK 180
Query: 156 KCEKSDAEIKYQPQSEIGRLMGFTEFGSSKK 186
E+ D E EI +MGF+ F +SK+
Sbjct: 181 DEEEDDDEDDSGLDPEIRAMMGFSGFSTSKR 211
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,980,725
Number of Sequences: 60738
Number of extensions: 439360
Number of successful extensions: 1819
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1812
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 30,389,216
effective HSP length: 100
effective length of query: 86
effective length of database: 24,315,416
effective search space: 2091125776
effective search space used: 2091125776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)