ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0424.1    suspect: LH  T     KOG3575   Signal transduction mechanisms                                 FOG: Hormone receptors

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0424.1 146049  146219 57   
         (57 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE17021 [T] KOG3575 FOG: Hormone receptors                             28   2.4  
Hs4506295 [T] KOG0792 Protein tyrosine phosphatase PTPMEG contai...    26   9.0  

>CE17021 [T] KOG3575 FOG: Hormone receptors
          Length = 440

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 2   KCSRGGSNSRPSDYETDALPTELL 25
           KCS  G NSR   Y+ DA  T LL
Sbjct: 92  KCSEAGMNSRNIQYDRDANKTSLL 115


>Hs4506295 [T] KOG0792 Protein tyrosine phosphatase PTPMEG contains FERM
           domain
          Length = 926

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 7/55 (12%)

Query: 8   SNSRPSDYETDALPTELLKQISW-------KTEFLKSFMHLGFDVPLSRRELTSN 55
           S   P D +  ALP +  K+ SW         + L+S ++  FD+P S  + T N
Sbjct: 453 SQETPGDGKPPALPPKQSKKNSWNQIHYSHSQQDLESHINETFDIPSSPEKPTPN 507


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,671,671
Number of Sequences: 60738
Number of extensions: 109739
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 30,389,216
effective HSP length: 33
effective length of query: 24
effective length of database: 28,384,862
effective search space: 681236688
effective search space used: 681236688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)