ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0500    suspect: LH   KA    KOG2868  RNA processing and modification                                Decapping enzyme complex component DCP1
r_klactV0500    suspect: LH   KA    KOG2868  Transcription                                                  Decapping enzyme complex component DCP1

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0500  174481  175044 188  
         (188 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOL149w [KA] KOG2868 Decapping enzyme complex component DCP1          235   2e-62

>YOL149w [KA] KOG2868 Decapping enzyme complex component DCP1
          Length = 231

 Score =  235 bits (600), Expect = 2e-62
 Identities = 132/223 (59%), Positives = 148/223 (66%), Gaps = 40/223 (17%)

Query: 2   STETLEIYRKALNFNVIARYDPKIKQLLFHTPHATVYKWG--DDNWNKLEYQGVLAIYLR 59
           S   LE YRKALNFNVI RYDPKIKQLLFHTPHA++YKW    D WNKLEYQGVLAIYLR
Sbjct: 11  SATQLEFYRKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLR 70

Query: 60  DVGDKEAILPEVSSYDDTITGQQSEANTPHV----------------------------- 90
           DV     +LP VS  +  I   Q+ +N   V                             
Sbjct: 71  DVSQNTNLLP-VSPQEVDIFDSQNGSNNIQVNNGSDNSNRNSSGNGNSYKSNDSLTYNCG 129

Query: 91  --LTGHDIYNYGLIIMNRINPDNFSLAIAPNSVLNKRKLFAPNREEE----LEPMKVEVR 144
             L+G DIYNYGLII+NRINPDNFS+ I PNSV+NKRK+F  N EE+    LE M VEV+
Sbjct: 130 KTLSGKDIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVF--NAEEDTLNPLECMGVEVK 187

Query: 145 DDLVMIKTLKKEVYGIWVHTPEDRQNIYELIKYLLENEPTDSF 187
           D+LV+IK LK EVYGIW+HT  DRQNIYELIKYLLENEP DSF
Sbjct: 188 DELVIIKNLKHEVYGIWIHTVSDRQNIYELIKYLLENEPKDSF 230


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,996,289
Number of Sequences: 60738
Number of extensions: 515458
Number of successful extensions: 1346
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 2
length of query: 188
length of database: 30,389,216
effective HSP length: 100
effective length of query: 88
effective length of database: 24,315,416
effective search space: 2139756608
effective search space used: 2139756608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)