ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0508 suspect: LH U KOG4186 Intracellular trafficking, secretion, and vesicular transport Peroxisomal biogenesis protein (peroxin)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0508 178218 177517 -234
(234 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL147c [U] KOG4186 Peroxisomal biogenesis protein (peroxin) 265 4e-71
SPBC582.09 [U] KOG4186 Peroxisomal biogenesis protein (peroxin) 60 3e-09
>YOL147c [U] KOG4186 Peroxisomal biogenesis protein (peroxin)
Length = 236
Score = 265 bits (677), Expect = 4e-71
Identities = 127/234 (54%), Positives = 174/234 (74%), Gaps = 2/234 (0%)
Query: 1 MVLDTVIYHPTLTKFISLLNKTAGREKILRLLQYLVRFLAVQYRSGLNRQLQSEFTSVRK 60
MV DT++YHP++T+F+ L+ +AGREK+LRLLQYL RFLAVQ S L RQLQ++FT+VRK
Sbjct: 1 MVCDTLVYHPSVTRFVKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRK 60
Query: 61 ILRFFKPLNHIQDAAKLYDNKIAPDQWVRWLSIIKNVGYVGYLTLDQINLLRILKLIPAT 120
LRF KPLNH+Q AAK YDNK+A D VR +++KN+ + YL+LDQ+NLLRILK+IP T
Sbjct: 61 FLRFLKPLNHLQAAAKFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQVNLLRILKVIPVT 120
Query: 121 PITAKKVPRYTNWFWFVALIAGLITDVRKLYTSQRKIEASLSSKGNAPTEKASSEK--LT 178
+T KK+PR++NW W L++GL D+RK+ TS +I A + +K + ++ K L
Sbjct: 121 VLTGKKIPRWSNWCWLFGLLSGLAMDLRKIQTSHAQIAAFVKAKSQSQGDEHEDHKKVLG 180
Query: 179 AYYNERFAAFRRLIWDSIDTFIVLNNLQFLRNDESSVALAGVATSVFGLQDVWK 232
Y +R+ A RRL WD+ D+FIVLNNL +L ++E VAL+GV TS+ G+QD+WK
Sbjct: 181 KAYQDRYTALRRLFWDAADSFIVLNNLGYLSSNEEYVALSGVVTSILGMQDMWK 234
>SPBC582.09 [U] KOG4186 Peroxisomal biogenesis protein (peroxin)
Length = 238
Score = 59.7 bits (143), Expect = 3e-09
Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 19/238 (7%)
Query: 6 VIYHPTLTKFISLLNKTAGREKILRLLQYLVRFLAVQYRSGLN--------RQLQSEFTS 57
+ +P + +LN R+K R LQ++ + L+ G + ++L+S +
Sbjct: 4 IFENPQYVHVLRMLNSMPARDKTFRALQFVAKLLSWHLFYGGSSLSTVNKWKKLESNISF 63
Query: 58 VRKILRFFKPLNHI----QDAAKLYDNKIAPDQWVRWLSIIKNVGYVGYLTLDQINLLRI 113
RK+ K L++I D+ KL + + +S K+V + GY T + I
Sbjct: 64 SRKLFSIGKVLDYICKVYFDSLKLQNPLSGNKSALPTISFTKDVAFAGYATAELIGWFNK 123
Query: 114 LKLIPATPITAKKVPRYTNWFWFVALIAGLITDVRKLYTSQRKIEASLSSKGNAPTEKAS 173
+L+P + +K++ VAL++ + +L + +KI+++ +
Sbjct: 124 TELMPCS--HSKQISTIGKQCLAVALLSSCLAGCYELQQNSKKIKSATQE-----ASEKD 176
Query: 174 SEKLTAYYNERFAAFRRLIWDSIDTFIVLNNLQFLRNDESSVALAGVATSVFGLQDVW 231
S L ER + +++D I L L L+ ++ VA AG+ TS+ + W
Sbjct: 177 STSLQTLQKERKEILFFALQNALDATIPLAELDILKVNDGFVAAAGITTSLMSVYKTW 234
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,442,595
Number of Sequences: 60738
Number of extensions: 460074
Number of successful extensions: 1564
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 2
length of query: 234
length of database: 30,389,216
effective HSP length: 103
effective length of query: 131
effective length of database: 24,133,202
effective search space: 3161449462
effective search space used: 3161449462
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)